Wall clock time and date at job start Sat Apr 11 2020 01:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46895 * 110.99673 * 2 1 4 4 C 1.50699 * 109.47340 * 66.04945 * 3 2 1 5 5 C 1.38282 * 119.92316 * 269.72388 * 4 3 2 6 6 C 1.38109 * 120.07406 * 179.72491 * 5 4 3 7 7 C 1.38906 * 119.92137 * 0.54795 * 6 5 4 8 8 N 1.39676 * 120.07117 * 179.75064 * 7 6 5 9 9 C 1.46506 * 120.00013 * 179.97438 * 8 7 6 10 10 C 1.46501 * 120.00293 * 359.97394 * 8 7 6 11 11 C 1.50700 * 109.47002 * 90.00066 * 10 8 7 12 12 H 1.08000 * 119.99862 * 0.02562 * 11 10 8 13 13 C 1.37876 * 119.99870 * 180.02562 * 11 10 8 14 14 N 1.31513 * 120.00037 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00188 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.46909 * 90.00133 * 15 13 11 17 17 H 1.48500 * 109.47289 * 210.00218 * 15 13 11 18 18 H 1.48502 * 109.47052 * 330.00278 * 15 13 11 19 19 C 1.38902 * 119.85499 * 359.72588 * 7 6 5 20 20 C 1.38110 * 119.92341 * 0.02562 * 19 7 6 21 21 C 1.46894 * 110.99803 * 236.04523 * 2 1 3 22 22 C 1.50703 * 109.47420 * 293.95542 * 21 2 1 23 23 C 1.38225 * 119.61869 * 94.99788 * 22 21 2 24 24 C 1.38635 * 119.15939 * 179.97438 * 23 22 21 25 25 C 1.38675 * 118.41956 * 0.02562 * 24 23 22 26 26 C 1.38186 * 119.16332 * 0.27967 * 25 24 23 27 27 N 1.31860 * 119.61591 * 274.98144 * 22 21 2 28 28 H 1.09005 * 109.47126 * 183.95389 * 1 2 3 29 29 H 1.08998 * 109.47333 * 303.95233 * 1 2 3 30 30 H 1.08994 * 109.47118 * 63.95609 * 1 2 3 31 31 H 1.09002 * 109.46838 * 186.04897 * 3 2 1 32 32 H 1.08997 * 109.47358 * 306.04209 * 3 2 1 33 33 H 1.08008 * 119.96302 * 359.97438 * 5 4 3 34 34 H 1.08004 * 120.03553 * 180.27287 * 6 5 4 35 35 H 1.09001 * 109.47132 * 89.99662 * 9 8 7 36 36 H 1.08993 * 109.47096 * 209.99725 * 9 8 7 37 37 H 1.08997 * 109.46634 * 330.00207 * 9 8 7 38 38 H 1.09002 * 109.47418 * 210.00327 * 10 8 7 39 39 H 1.09002 * 109.47088 * 330.00340 * 10 8 7 40 40 H 0.96998 * 120.00221 * 179.97438 * 14 13 11 41 41 H 1.07999 * 120.03962 * 179.97438 * 19 7 6 42 42 H 1.07995 * 119.96041 * 179.97438 * 20 19 7 43 43 H 1.09000 * 109.47041 * 173.95746 * 21 2 1 44 44 H 1.09007 * 109.47476 * 53.95444 * 21 2 1 45 45 H 1.07997 * 120.42054 * 0.02562 * 23 22 21 46 46 H 1.07998 * 120.78847 * 180.02562 * 24 23 22 47 47 H 1.08002 * 120.41399 * 179.97438 * 25 24 23 48 48 H 1.07999 * 119.61418 * 179.70216 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 6 0.4530 2.7536 1.4045 6 6 0.1187 3.3693 2.5947 7 6 0.9787 3.2878 3.6825 8 7 0.6462 3.9136 4.8861 9 6 1.5541 3.8261 6.0325 10 6 -0.6105 4.6576 5.0022 11 6 -1.7011 3.7309 5.4742 12 1 -1.4801 2.6918 5.6688 13 6 -2.9810 4.2096 5.6578 14 7 -3.9326 3.4010 6.0702 15 14 -3.3631 6.0070 5.3220 16 1 -3.7724 6.1695 3.9037 17 1 -4.4668 6.4527 6.2099 18 1 -2.1538 6.8277 5.5853 19 6 2.1699 2.5820 3.5708 20 6 2.4956 1.9644 2.3792 21 6 1.9954 -0.7660 -1.1375 22 6 1.6369 -2.2204 -0.9729 23 6 0.5016 -2.7177 -1.5849 24 6 0.1811 -4.0573 -1.4275 25 6 1.0179 -4.8500 -0.6565 26 6 2.1324 -4.2811 -0.0700 27 7 2.4100 -3.0040 -0.2469 28 1 -0.3633 -1.0253 0.0709 29 1 -0.3634 0.5739 0.8524 30 1 -0.3633 0.4512 -0.9233 31 1 3.0797 1.3444 -0.1083 32 1 1.5611 1.9273 -0.8309 33 1 -0.2130 2.8207 0.5568 34 1 -0.8083 3.9173 2.6782 35 1 2.2565 4.6592 6.0042 36 1 0.9777 3.8682 6.9566 37 1 2.1038 2.8859 5.9896 38 1 -0.4875 5.4691 5.7194 39 1 -0.8798 5.0699 4.0297 40 1 -4.8330 3.7378 6.1997 41 1 2.8409 2.5170 4.4145 42 1 3.4217 1.4158 2.2916 43 1 3.0797 -0.6612 -1.1756 44 1 1.5611 -0.3873 -2.0628 45 1 -0.1272 -2.0711 -2.1788 46 1 -0.6994 -4.4736 -1.8942 47 1 0.7986 -5.8976 -0.5121 48 1 2.7864 -4.8906 0.5359 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273428947.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:31:55 Heat of formation + Delta-G solvation = 84.411201 kcal Electronic energy + Delta-G solvation = -26511.251862 eV Core-core repulsion = 22952.515149 eV Total energy + Delta-G solvation = -3558.736714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.42180 -39.18523 -37.40911 -35.47920 -32.76840 -32.61013 -32.03074 -30.54475 -30.00791 -28.32922 -27.55175 -26.70360 -24.71964 -23.67110 -23.18943 -21.98017 -21.40975 -21.03824 -19.52159 -17.06465 -16.93374 -16.64758 -16.47044 -15.82244 -15.79014 -15.38361 -14.81573 -14.71561 -14.28644 -14.02860 -13.72610 -13.57364 -13.44373 -13.19417 -13.03916 -12.95037 -12.86543 -12.42924 -12.06746 -11.95818 -11.73625 -11.60682 -11.57796 -11.46547 -11.36946 -10.97539 -10.71743 -10.59759 -10.24729 -10.03650 -10.03453 -9.58857 -9.54547 -9.23159 -8.87189 -8.65840 -8.30355 -8.22036 -6.39093 -6.14316 -4.14244 0.89810 1.11276 2.08947 2.20290 3.21069 3.29053 3.29829 3.53866 4.05339 4.09307 4.17650 4.32096 4.53821 4.63825 4.65952 4.84487 4.93778 5.11652 5.15966 5.18420 5.27398 5.33345 5.46528 5.49312 5.56717 5.60638 5.63319 5.66950 5.79343 5.81199 5.92847 5.97177 5.97779 6.03536 6.15625 6.25542 6.33267 6.39574 6.49936 6.57644 6.75305 6.76339 6.98041 7.04108 7.08177 7.13497 7.30472 7.53165 7.55868 7.88878 8.06210 8.35831 8.52164 8.93821 9.45541 10.98729 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.002609 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.617669 B =10730.917121 C =11433.405528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.526 5.526 3 C 0.112 3.888 4 C -0.164 4.164 5 C -0.066 4.066 6 C -0.189 4.189 7 C 0.241 3.759 8 N -0.612 5.612 9 C 0.099 3.901 10 C 0.221 3.779 11 C -0.534 4.534 12 H 0.076 0.924 13 C 0.072 3.928 14 N -0.895 5.895 15 Si 0.872 3.128 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.265 1.265 19 C -0.218 4.218 20 C -0.049 4.049 21 C 0.102 3.898 22 C 0.143 3.857 23 C -0.168 4.168 24 C -0.076 4.076 25 C -0.179 4.179 26 C 0.100 3.900 27 N -0.465 5.465 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.023 0.977 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.108 0.892 34 H 0.127 0.873 35 H 0.036 0.964 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.265 0.735 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.131 0.869 46 H 0.132 0.868 47 H 0.133 0.867 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.863 -9.980 -15.804 22.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.250 5.250 3 C -0.014 4.014 4 C -0.167 4.167 5 C -0.086 4.086 6 C -0.211 4.211 7 C 0.135 3.865 8 N -0.318 5.318 9 C -0.045 4.045 10 C 0.100 3.900 11 C -0.572 4.572 12 H 0.094 0.906 13 C -0.130 4.130 14 N -0.533 5.533 15 Si 0.699 3.301 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.190 1.190 19 C -0.241 4.241 20 C -0.069 4.069 21 C -0.026 4.026 22 C 0.004 3.996 23 C -0.188 4.188 24 C -0.102 4.102 25 C -0.199 4.199 26 C -0.057 4.057 27 N -0.175 5.175 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.041 0.959 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.126 0.874 34 H 0.145 0.855 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.109 0.891 44 H 0.066 0.934 45 H 0.149 0.851 46 H 0.150 0.850 47 H 0.151 0.849 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 12.512 -9.729 -14.720 21.630 hybrid contribution -1.694 0.692 -1.056 2.113 sum 10.818 -9.037 -15.776 21.156 Atomic orbital electron populations 1.22528 0.87180 1.02079 1.01177 1.61955 1.08191 1.13812 1.41058 1.20844 0.99467 0.86514 0.94594 1.19109 0.97237 1.04614 0.95746 1.20653 0.95237 0.96060 0.96623 1.20771 1.01197 1.06555 0.92583 1.17911 0.92274 0.90083 0.86243 1.46708 1.21552 1.54894 1.08604 1.21492 0.93321 1.00005 0.89712 1.19649 0.81677 0.91968 0.96756 1.21490 0.92437 0.97951 1.45372 0.90552 1.24901 0.96096 0.97444 0.94593 1.69902 1.01962 1.35270 1.46160 0.86918 0.78600 0.85827 0.78789 1.19929 1.20965 1.19015 1.20569 0.98407 1.06301 0.98861 1.20511 0.98172 0.96326 0.91848 1.20963 1.01453 0.87823 0.92370 1.21102 0.90776 0.95714 0.91962 1.22005 0.98364 0.96367 1.02115 1.21562 0.98708 0.93629 0.96343 1.22146 0.96767 1.01354 0.99625 1.22791 0.95227 0.91207 0.96476 1.67500 1.31179 1.04985 1.13798 0.91984 0.89882 0.95893 0.90590 0.94691 0.87400 0.85511 0.94553 0.91310 0.92344 0.95475 0.95537 0.92527 0.86780 0.87102 0.89061 0.93418 0.85108 0.84964 0.84949 0.82813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 8.86 60.07 0.53 0.77 16 2 N -0.53 -6.82 4.74 -245.83 -1.17 -7.99 16 3 C 0.11 1.41 5.11 -4.98 -0.03 1.39 16 4 C -0.16 -2.54 4.88 -104.59 -0.51 -3.05 16 5 C -0.07 -1.11 7.90 -39.61 -0.31 -1.43 16 6 C -0.19 -3.74 9.21 -39.38 -0.36 -4.10 16 7 C 0.24 4.85 6.55 -83.79 -0.55 4.30 16 8 N -0.61 -12.90 2.99 -181.00 -0.54 -13.44 16 9 C 0.10 1.72 10.19 59.85 0.61 2.33 16 10 C 0.22 5.21 3.98 -5.19 -0.02 5.19 16 11 C -0.53 -14.89 9.94 -34.44 -0.34 -15.23 16 12 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 13 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 14 N -0.89 -27.04 13.96 55.43 0.77 -26.26 16 15 Si 0.87 20.72 27.47 -169.99 -4.67 16.05 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 19 C -0.22 -3.84 9.21 -39.38 -0.36 -4.20 16 20 C -0.05 -0.79 9.69 -39.61 -0.38 -1.17 16 21 C 0.10 1.10 5.29 -4.98 -0.03 1.08 16 22 C 0.14 1.65 5.64 -82.58 -0.47 1.18 16 23 C -0.17 -1.62 8.36 -39.44 -0.33 -1.95 16 24 C -0.08 -0.65 10.18 -39.27 -0.40 -1.05 16 25 C -0.18 -1.51 10.11 -39.44 -0.40 -1.91 16 26 C 0.10 1.01 11.18 -17.55 -0.20 0.81 16 27 N -0.47 -5.87 10.27 -9.47 -0.10 -5.97 16 28 H 0.06 0.80 6.40 -51.93 -0.33 0.47 16 29 H 0.08 1.27 5.91 -51.93 -0.31 0.96 16 30 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.86 7.87 -51.93 -0.41 0.45 16 32 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 33 H 0.11 1.60 8.00 -52.48 -0.42 1.18 16 34 H 0.13 2.70 6.14 -52.48 -0.32 2.38 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 37 H 0.06 0.92 6.20 -51.93 -0.32 0.60 16 38 H 0.03 0.64 7.13 -51.93 -0.37 0.26 16 39 H 0.03 0.62 5.62 -51.93 -0.29 0.33 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.11 1.82 6.14 -52.49 -0.32 1.50 16 42 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 43 H 0.09 0.95 7.93 -51.93 -0.41 0.54 16 44 H 0.05 0.43 8.02 -51.93 -0.42 0.01 16 45 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 46 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 47 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 48 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 386.39 15.07 5.82 5.82 Total: -1.00 -32.26 386.39 -10.83 -43.09 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -7.31 Total: 3.79 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -3.64 Total: -15.09 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -1.03 Total: -53.66 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.26 -10.83 -43.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273428947.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.498 kcal (2) G-P(sol) polarization free energy of solvation -32.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds