Wall clock time and date at job start Sat Apr 11 2020 01:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46895 * 110.99673 * 2 1 4 4 C 1.50699 * 109.47340 * 66.04945 * 3 2 1 5 5 C 1.38282 * 119.92316 * 269.72388 * 4 3 2 6 6 C 1.38109 * 120.07406 * 179.72491 * 5 4 3 7 7 C 1.38906 * 119.92137 * 0.54795 * 6 5 4 8 8 N 1.39676 * 120.07117 * 179.75064 * 7 6 5 9 9 C 1.46506 * 120.00013 * 179.97438 * 8 7 6 10 10 C 1.46501 * 120.00293 * 359.97394 * 8 7 6 11 11 C 1.50700 * 109.47002 * 90.00066 * 10 8 7 12 12 H 1.08000 * 119.99862 * 0.02562 * 11 10 8 13 13 C 1.37876 * 119.99870 * 180.02562 * 11 10 8 14 14 N 1.31513 * 120.00037 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00188 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.46909 * 90.00133 * 15 13 11 17 17 H 1.48500 * 109.47289 * 210.00218 * 15 13 11 18 18 H 1.48502 * 109.47052 * 330.00278 * 15 13 11 19 19 C 1.38902 * 119.85499 * 359.72588 * 7 6 5 20 20 C 1.38110 * 119.92341 * 0.02562 * 19 7 6 21 21 C 1.46894 * 110.99803 * 236.04523 * 2 1 3 22 22 C 1.50703 * 109.47420 * 293.95542 * 21 2 1 23 23 C 1.38225 * 119.61869 * 94.99788 * 22 21 2 24 24 C 1.38635 * 119.15939 * 179.97438 * 23 22 21 25 25 C 1.38675 * 118.41956 * 0.02562 * 24 23 22 26 26 C 1.38186 * 119.16332 * 0.27967 * 25 24 23 27 27 N 1.31860 * 119.61591 * 274.98144 * 22 21 2 28 28 H 1.09005 * 109.47126 * 183.95389 * 1 2 3 29 29 H 1.08998 * 109.47333 * 303.95233 * 1 2 3 30 30 H 1.08994 * 109.47118 * 63.95609 * 1 2 3 31 31 H 1.09002 * 109.46838 * 186.04897 * 3 2 1 32 32 H 1.08997 * 109.47358 * 306.04209 * 3 2 1 33 33 H 1.08008 * 119.96302 * 359.97438 * 5 4 3 34 34 H 1.08004 * 120.03553 * 180.27287 * 6 5 4 35 35 H 1.09001 * 109.47132 * 89.99662 * 9 8 7 36 36 H 1.08993 * 109.47096 * 209.99725 * 9 8 7 37 37 H 1.08997 * 109.46634 * 330.00207 * 9 8 7 38 38 H 1.09002 * 109.47418 * 210.00327 * 10 8 7 39 39 H 1.09002 * 109.47088 * 330.00340 * 10 8 7 40 40 H 0.96998 * 120.00221 * 179.97438 * 14 13 11 41 41 H 1.07999 * 120.03962 * 179.97438 * 19 7 6 42 42 H 1.07995 * 119.96041 * 179.97438 * 20 19 7 43 43 H 1.09000 * 109.47041 * 173.95746 * 21 2 1 44 44 H 1.09007 * 109.47476 * 53.95444 * 21 2 1 45 45 H 1.07997 * 120.42054 * 0.02562 * 23 22 21 46 46 H 1.07998 * 120.78847 * 180.02562 * 24 23 22 47 47 H 1.08002 * 120.41399 * 179.97438 * 25 24 23 48 48 H 1.07999 * 119.61418 * 179.70216 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 6 0.4530 2.7536 1.4045 6 6 0.1187 3.3693 2.5947 7 6 0.9787 3.2878 3.6825 8 7 0.6462 3.9136 4.8861 9 6 1.5541 3.8261 6.0325 10 6 -0.6105 4.6576 5.0022 11 6 -1.7011 3.7309 5.4742 12 1 -1.4801 2.6918 5.6688 13 6 -2.9810 4.2096 5.6578 14 7 -3.9326 3.4010 6.0702 15 14 -3.3631 6.0070 5.3220 16 1 -3.7724 6.1695 3.9037 17 1 -4.4668 6.4527 6.2099 18 1 -2.1538 6.8277 5.5853 19 6 2.1699 2.5820 3.5708 20 6 2.4956 1.9644 2.3792 21 6 1.9954 -0.7660 -1.1375 22 6 1.6369 -2.2204 -0.9729 23 6 0.5016 -2.7177 -1.5849 24 6 0.1811 -4.0573 -1.4275 25 6 1.0179 -4.8500 -0.6565 26 6 2.1324 -4.2811 -0.0700 27 7 2.4100 -3.0040 -0.2469 28 1 -0.3633 -1.0253 0.0709 29 1 -0.3634 0.5739 0.8524 30 1 -0.3633 0.4512 -0.9233 31 1 3.0797 1.3444 -0.1083 32 1 1.5611 1.9273 -0.8309 33 1 -0.2130 2.8207 0.5568 34 1 -0.8083 3.9173 2.6782 35 1 2.2565 4.6592 6.0042 36 1 0.9777 3.8682 6.9566 37 1 2.1038 2.8859 5.9896 38 1 -0.4875 5.4691 5.7194 39 1 -0.8798 5.0699 4.0297 40 1 -4.8330 3.7378 6.1997 41 1 2.8409 2.5170 4.4145 42 1 3.4217 1.4158 2.2916 43 1 3.0797 -0.6612 -1.1756 44 1 1.5611 -0.3873 -2.0628 45 1 -0.1272 -2.0711 -2.1788 46 1 -0.6994 -4.4736 -1.8942 47 1 0.7986 -5.8976 -0.5121 48 1 2.7864 -4.8906 0.5359 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273428947.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:31:53 Heat of formation + Delta-G solvation = 64.921367 kcal Electronic energy + Delta-G solvation = -26512.097005 eV Core-core repulsion = 22952.515149 eV Total energy + Delta-G solvation = -3559.581856 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.16710 -40.51808 -38.54125 -36.87275 -34.73316 -33.41821 -32.93937 -31.98850 -31.28050 -30.05348 -28.50649 -27.84729 -26.19496 -24.62039 -24.29782 -23.17431 -22.89761 -21.99522 -20.94841 -19.08492 -18.17327 -17.69538 -17.25563 -16.92390 -16.67211 -16.60867 -16.24461 -15.88161 -15.77880 -15.19589 -15.07164 -14.78990 -14.57827 -14.35936 -14.28173 -14.23169 -14.02742 -13.69279 -13.36202 -13.23494 -13.14619 -12.88071 -12.75252 -12.59411 -12.51967 -12.43074 -12.34398 -12.05242 -11.89638 -11.74660 -11.43682 -10.82970 -10.75328 -10.42439 -10.29130 -9.92538 -9.65293 -9.18676 -8.33910 -7.90630 -6.39410 0.18540 0.42324 0.70642 0.84252 1.33656 1.34633 1.45459 2.29967 2.53945 2.72848 2.99816 3.08349 3.40162 3.45423 3.86844 4.03026 4.05968 4.07895 4.20150 4.23246 4.29023 4.36055 4.40090 4.43343 4.50109 4.60269 4.63943 4.67382 4.69222 4.76637 4.80393 4.82677 4.84264 4.89806 4.92902 5.04770 5.08564 5.10087 5.24931 5.30443 5.31192 5.45110 5.59896 5.65103 5.83063 5.90173 6.08975 6.13334 6.15520 6.24599 6.59653 6.69660 6.87078 7.15587 7.26124 8.83674 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.002609 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.617669 B =10730.917121 C =11433.405528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.116 3.884 4 C -0.153 4.153 5 C -0.065 4.065 6 C -0.217 4.217 7 C 0.211 3.789 8 N -0.629 5.629 9 C 0.097 3.903 10 C 0.232 3.768 11 C -0.536 4.536 12 H 0.022 0.978 13 C 0.012 3.988 14 N -0.946 5.946 15 Si 0.947 3.053 16 H -0.264 1.264 17 H -0.280 1.280 18 H -0.243 1.243 19 C -0.218 4.218 20 C -0.051 4.051 21 C 0.106 3.894 22 C 0.119 3.881 23 C -0.174 4.174 24 C -0.082 4.082 25 C -0.176 4.176 26 C 0.080 3.920 27 N -0.501 5.501 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.125 0.875 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.036 0.964 39 H 0.030 0.970 40 H 0.268 0.732 41 H 0.130 0.870 42 H 0.136 0.864 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.147 0.853 46 H 0.159 0.841 47 H 0.160 0.840 48 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.123 -9.810 -17.972 24.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.011 4.011 4 C -0.156 4.156 5 C -0.084 4.084 6 C -0.239 4.239 7 C 0.107 3.893 8 N -0.337 5.337 9 C -0.046 4.046 10 C 0.110 3.890 11 C -0.575 4.575 12 H 0.041 0.959 13 C -0.186 4.186 14 N -0.586 5.586 15 Si 0.770 3.230 16 H -0.189 1.189 17 H -0.205 1.205 18 H -0.167 1.167 19 C -0.241 4.241 20 C -0.070 4.070 21 C -0.021 4.021 22 C -0.019 4.019 23 C -0.194 4.194 24 C -0.107 4.107 25 C -0.196 4.196 26 C -0.076 4.076 27 N -0.210 5.210 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.143 0.857 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.148 0.852 42 H 0.154 0.846 43 H 0.111 0.889 44 H 0.086 0.914 45 H 0.164 0.836 46 H 0.177 0.823 47 H 0.178 0.822 48 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 13.819 -9.577 -16.908 23.845 hybrid contribution -2.034 0.398 -0.454 2.122 sum 11.785 -9.179 -17.362 22.903 Atomic orbital electron populations 1.22398 0.87579 1.01515 1.00835 1.61854 1.07995 1.14011 1.42870 1.20853 1.00647 0.86418 0.93165 1.19483 0.96050 1.03032 0.97017 1.20836 0.96059 0.95426 0.96060 1.20778 1.00775 1.08127 0.94244 1.18193 0.93583 0.91456 0.86057 1.46696 1.21255 1.55768 1.10025 1.21624 0.93069 1.01827 0.88046 1.19332 0.81785 0.91340 0.96574 1.21665 0.94325 0.96307 1.45231 0.95921 1.25880 0.95648 1.02965 0.94121 1.70070 1.02627 1.38005 1.47928 0.85724 0.79115 0.79245 0.78964 1.18918 1.20539 1.16667 1.20800 0.97650 1.05535 1.00112 1.20867 0.99121 0.95732 0.91289 1.20974 1.01524 0.87400 0.92234 1.21284 0.91701 0.96000 0.92879 1.22232 0.97946 0.97262 1.01945 1.21972 0.99448 0.93325 0.95991 1.22481 0.95847 1.02718 0.98538 1.23189 0.96387 0.90909 0.97146 1.67451 1.32405 1.06239 1.14954 0.92319 0.92737 0.93942 0.88852 0.93109 0.85737 0.88047 0.91920 0.92601 0.91023 0.94650 0.95227 0.92310 0.85224 0.84600 0.88942 0.91386 0.83556 0.82308 0.82226 0.81275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 8.86 127.69 1.13 1.75 16 2 N -0.54 -13.04 4.74 -931.66 -4.42 -17.46 16 3 C 0.12 2.60 5.11 85.56 0.44 3.04 16 4 C -0.15 -4.49 4.88 -19.84 -0.10 -4.59 16 5 C -0.06 -2.15 7.90 22.25 0.18 -1.97 16 6 C -0.22 -8.82 9.21 22.40 0.21 -8.62 16 7 C 0.21 8.61 6.55 38.21 0.25 8.86 16 8 N -0.63 -27.00 2.99 -726.56 -2.17 -29.17 16 9 C 0.10 3.36 10.19 127.77 1.30 4.66 16 10 C 0.23 11.17 3.98 85.63 0.34 11.51 16 11 C -0.54 -31.30 9.94 25.60 0.25 -31.05 16 12 H 0.02 1.52 8.06 -2.91 -0.02 1.49 16 13 C 0.01 0.69 5.47 84.65 0.46 1.15 16 14 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 15 Si 0.95 43.18 27.47 68.60 1.88 45.06 16 16 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 18 H -0.24 -10.15 6.54 99.48 0.65 -9.50 16 19 C -0.22 -7.49 9.21 22.40 0.21 -7.28 16 20 C -0.05 -1.54 9.69 22.25 0.22 -1.32 16 21 C 0.11 2.08 5.29 85.56 0.45 2.53 16 22 C 0.12 2.59 5.64 42.55 0.24 2.83 16 23 C -0.17 -3.01 8.36 22.36 0.19 -2.82 16 24 C -0.08 -1.19 10.18 22.47 0.23 -0.97 16 25 C -0.18 -2.61 10.11 22.36 0.23 -2.38 16 26 C 0.08 1.53 11.18 84.67 0.95 2.48 16 27 N -0.50 -12.21 10.27 -183.88 -1.89 -14.10 16 28 H 0.06 1.47 6.40 -2.38 -0.02 1.45 16 29 H 0.05 1.65 5.91 -2.39 -0.01 1.64 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 1.81 7.87 -2.39 -0.02 1.79 16 32 H 0.05 1.00 8.06 -2.39 -0.02 0.98 16 33 H 0.12 3.60 8.00 -2.91 -0.02 3.58 16 34 H 0.10 4.55 6.14 -2.91 -0.02 4.53 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 37 H 0.07 2.23 6.20 -2.39 -0.01 2.22 16 38 H 0.04 1.64 7.13 -2.39 -0.02 1.62 16 39 H 0.03 1.41 5.62 -2.39 -0.01 1.40 16 40 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 41 H 0.13 3.94 6.14 -2.91 -0.02 3.92 16 42 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 43 H 0.09 1.75 7.93 -2.39 -0.02 1.73 16 44 H 0.07 1.03 8.02 -2.38 -0.02 1.01 16 45 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 46 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 47 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 48 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -73.66 386.39 1.75 -71.90 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.89 Total: 25.09 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: 7.17 Total: -22.19 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -8.18 Total: -119.87 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.88 Total: 45.06 kcal Total: -73.66 1.75 -71.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273428947.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.824 kcal (2) G-P(sol) polarization free energy of solvation -73.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds