Wall clock time and date at job start Sat Apr 11 2020 01:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 6 6 C 1.38624 * 120.40636 * 74.71575 * 5 2 1 7 7 C 1.38585 * 118.56049 * 179.80175 * 6 5 2 8 8 N 1.32285 * 119.19565 * 0.48001 * 7 6 5 9 9 C 1.32480 * 120.74188 * 359.74004 * 8 7 6 10 10 N 1.38411 * 119.21523 * 180.02562 * 9 8 7 11 11 C 1.46503 * 119.99852 * 0.02784 * 10 9 8 12 12 H 1.08996 * 109.47488 * 34.99647 * 11 10 9 13 13 C 1.53004 * 109.46773 * 154.99838 * 11 10 9 14 14 C 1.50704 * 109.47111 * 294.99655 * 13 11 10 15 15 H 1.08003 * 120.00043 * 0.02562 * 14 13 11 16 16 C 1.37874 * 119.99706 * 180.02562 * 14 13 11 17 17 N 1.31508 * 120.00558 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99825 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46713 * 59.99934 * 18 16 14 20 20 H 1.48497 * 109.47129 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47003 * 300.00107 * 18 16 14 22 22 C 1.50695 * 109.47109 * 274.99642 * 11 10 9 23 23 C 1.38238 * 119.99842 * 319.72904 * 22 11 10 24 24 C 1.38235 * 120.00198 * 179.81073 * 23 22 11 25 25 C 1.38235 * 119.99522 * 0.39750 * 24 23 22 26 26 C 1.38236 * 120.00412 * 359.85794 * 25 24 23 27 27 C 1.38232 * 120.00388 * 140.00131 * 22 11 10 28 28 N 1.32265 * 120.40116 * 254.99778 * 5 2 1 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 33 33 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 35 35 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 36 36 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 38 38 H 1.08001 * 120.71892 * 0.02562 * 6 5 2 39 39 H 1.07999 * 120.40087 * 180.20220 * 7 6 5 40 40 H 0.96996 * 120.00006 * 180.02562 * 10 9 8 41 41 H 1.08994 * 109.47394 * 54.99536 * 13 11 10 42 42 H 1.09003 * 109.46700 * 174.99828 * 13 11 10 43 43 H 0.97001 * 120.00240 * 180.02562 * 17 16 14 44 44 H 1.08004 * 120.00391 * 359.97438 * 23 22 11 45 45 H 1.07994 * 120.00582 * 180.22840 * 24 23 22 46 46 H 1.08004 * 119.99860 * 179.83804 * 25 24 23 47 47 H 1.07993 * 120.00055 * 179.97438 * 26 25 24 48 48 H 1.08003 * 119.99680 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0324 -0.7103 -1.2305 6 6 1.9691 -0.0946 -2.4709 7 6 2.4458 -0.7811 -3.5764 8 7 2.9351 -1.9998 -3.4175 9 6 2.9771 -2.5618 -2.2185 10 7 3.4961 -3.8382 -2.0885 11 6 3.9914 -4.5513 -3.2685 12 1 4.4507 -3.8411 -3.9560 13 6 5.0299 -5.5894 -2.8384 14 6 6.2329 -4.8877 -2.2626 15 1 6.2544 -3.8092 -2.2083 16 6 7.3060 -5.6225 -1.8050 17 7 7.2801 -6.9357 -1.8714 18 14 8.7969 -4.7528 -1.0905 19 1 8.3836 -3.9493 0.0880 20 1 9.8054 -5.7602 -0.6743 21 1 9.3871 -3.8574 -2.1178 22 6 2.8430 -5.2444 -3.9554 23 6 1.8646 -5.8696 -3.2051 24 6 0.8091 -6.5020 -3.8350 25 6 0.7363 -6.5163 -5.2153 26 6 1.7175 -5.8957 -5.9657 27 6 2.7709 -5.2599 -5.3357 28 7 2.5339 -1.9309 -1.1410 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 -1.7490 1.2492 36 1 3.1301 -0.7209 1.2493 37 1 1.6767 -0.2075 2.1392 38 1 1.5606 0.8999 -2.5731 39 1 2.4140 -0.3284 -4.5564 40 1 3.5320 -4.2607 -1.2160 41 1 4.5966 -6.2459 -2.0840 42 1 5.3331 -6.1798 -3.7031 43 1 8.0350 -7.4526 -1.5491 44 1 1.9235 -5.8616 -2.1267 45 1 0.0428 -6.9872 -3.2488 46 1 -0.0870 -7.0127 -5.7076 47 1 1.6608 -5.9073 -7.0441 48 1 3.5374 -4.7749 -5.9219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293181223.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:32:54 Heat of formation + Delta-G solvation = 60.863311 kcal Electronic energy + Delta-G solvation = -27532.666452 eV Core-core repulsion = 23972.908626 eV Total energy + Delta-G solvation = -3559.757827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.76231 -39.00894 -37.26409 -35.73314 -33.15894 -32.64821 -31.49776 -30.49461 -29.60460 -28.52544 -27.38188 -27.15610 -25.01648 -24.18350 -22.81861 -22.13816 -21.91902 -20.26200 -19.24502 -17.56793 -16.78329 -16.52595 -16.11182 -15.59580 -15.01300 -14.74686 -14.70680 -14.58021 -14.40401 -13.92627 -13.83673 -13.52250 -13.43792 -13.04718 -12.85669 -12.53125 -12.41423 -12.16370 -12.08765 -11.72411 -11.51591 -11.25693 -11.14442 -11.13322 -11.08158 -10.91496 -10.73385 -10.69843 -10.51196 -10.32856 -10.22082 -9.94451 -9.60486 -9.21486 -8.64505 -8.50989 -8.43538 -8.17354 -7.52326 -6.06708 -4.09778 1.54307 1.62020 1.79966 1.82447 3.30715 3.35115 3.38487 3.44752 4.23609 4.28014 4.32053 4.42203 4.61112 4.86512 4.94287 5.09039 5.24029 5.28127 5.29831 5.32082 5.39099 5.45545 5.52269 5.57335 5.59727 5.63247 5.68145 5.78109 5.84127 5.90530 5.93689 5.96224 6.00429 6.15140 6.21009 6.23715 6.37625 6.43449 6.44713 6.60087 6.65104 6.86680 6.87375 7.09785 7.27555 7.42326 7.48161 7.55749 7.75783 7.90149 8.09744 8.27906 8.86743 8.95304 9.55014 11.03837 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.007785 B = 0.004933 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3595.707777 B = 5674.912533 C = 8247.856370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.021 4.021 3 C -0.138 4.138 4 C -0.128 4.128 5 C 0.230 3.770 6 C -0.310 4.310 7 C 0.191 3.809 8 N -0.566 5.566 9 C 0.576 3.424 10 N -0.663 5.663 11 C 0.199 3.801 12 H 0.090 0.910 13 C 0.023 3.977 14 C -0.518 4.518 15 H 0.056 0.944 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.069 4.069 23 C -0.107 4.107 24 C -0.126 4.126 25 C -0.135 4.135 26 C -0.124 4.124 27 C -0.105 4.105 28 N -0.571 5.571 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.133 0.867 39 H 0.158 0.842 40 H 0.414 0.586 41 H 0.024 0.976 42 H 0.036 0.964 43 H 0.262 0.738 44 H 0.115 0.885 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.115 0.885 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.882 11.645 -0.930 18.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.022 4.022 3 C -0.196 4.196 4 C -0.185 4.185 5 C 0.080 3.920 6 C -0.337 4.337 7 C 0.022 3.978 8 N -0.290 5.290 9 C 0.219 3.781 10 N -0.295 5.295 11 C 0.094 3.906 12 H 0.108 0.892 13 C -0.014 4.014 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.071 4.071 23 C -0.125 4.125 24 C -0.144 4.144 25 C -0.154 4.154 26 C -0.142 4.142 27 C -0.124 4.124 28 N -0.293 5.293 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.151 0.849 39 H 0.175 0.825 40 H 0.251 0.749 41 H 0.042 0.958 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.133 0.867 45 H 0.131 0.869 46 H 0.131 0.869 47 H 0.133 0.867 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.266 10.363 -0.959 17.659 hybrid contribution 0.583 1.021 0.549 1.297 sum -13.683 11.384 -0.410 17.804 Atomic orbital electron populations 1.21833 0.93062 1.02317 1.01994 1.19530 0.95779 0.94707 0.92151 1.21901 1.01495 0.94104 1.02071 1.21676 1.01514 1.00717 0.94602 1.21104 0.88293 0.88629 0.93929 1.22116 1.13030 1.03894 0.94621 1.22799 0.87866 0.88509 0.98590 1.67967 1.23389 1.12864 1.24737 1.19441 0.86835 0.87501 0.84343 1.44421 1.62478 1.10831 1.11796 1.20274 0.90557 0.94292 0.85510 0.89163 1.19409 0.91724 0.92760 0.97549 1.21065 1.00786 0.93049 1.40739 0.92583 1.24963 0.98460 0.94762 0.95842 1.69942 1.31481 1.04837 1.46850 0.86666 0.82530 0.79274 0.79604 1.20280 1.21268 1.20266 1.20583 0.96164 0.96504 0.93809 1.20930 0.94290 0.97506 0.99766 1.21034 0.98443 1.00236 0.94677 1.20982 0.99222 1.01072 0.94087 1.21028 0.95060 0.98869 0.99283 1.20986 0.97997 0.99309 0.94113 1.67693 1.18978 1.10626 1.32041 0.92383 0.92376 0.91856 0.91912 0.92353 0.92128 0.91500 0.92395 0.93087 0.84923 0.82494 0.74855 0.95767 0.94561 0.92827 0.86693 0.86879 0.86947 0.86689 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 8.41 37.16 0.31 -0.97 16 2 C -0.02 -0.23 0.88 -155.66 -0.14 -0.37 16 3 C -0.14 -1.28 8.10 37.16 0.30 -0.98 16 4 C -0.13 -1.52 7.83 37.16 0.29 -1.23 16 5 C 0.23 3.33 5.57 -82.26 -0.46 2.87 16 6 C -0.31 -4.03 9.20 -39.31 -0.36 -4.39 16 7 C 0.19 2.73 11.30 -17.23 -0.19 2.53 16 8 N -0.57 -10.13 9.20 -13.93 -0.13 -10.26 16 9 C 0.58 10.85 8.40 -322.81 -2.71 8.13 16 10 N -0.66 -12.99 4.19 -56.93 -0.24 -13.23 16 11 C 0.20 4.07 2.11 -69.08 -0.15 3.92 16 12 H 0.09 1.96 7.37 -51.93 -0.38 1.58 16 13 C 0.02 0.56 4.49 -27.88 -0.13 0.43 16 14 C -0.52 -14.02 8.84 -34.44 -0.30 -14.32 16 15 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 18 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C -0.07 -1.28 4.93 -104.63 -0.52 -1.80 16 23 C -0.11 -1.87 9.32 -39.58 -0.37 -2.24 16 24 C -0.13 -1.94 10.05 -39.58 -0.40 -2.33 16 25 C -0.14 -1.95 10.05 -39.58 -0.40 -2.35 16 26 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 27 C -0.11 -1.79 9.67 -39.59 -0.38 -2.18 16 28 N -0.57 -9.94 9.21 -10.15 -0.09 -10.03 16 29 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.49 6.79 -51.93 -0.35 0.14 16 35 H 0.07 0.88 7.88 -51.93 -0.41 0.47 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.13 1.32 6.85 -52.49 -0.36 0.96 16 39 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 40 H 0.41 8.14 8.72 -40.82 -0.36 7.78 16 41 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 44 H 0.12 1.99 7.73 -52.48 -0.41 1.59 16 45 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 46 H 0.11 1.31 8.06 -52.48 -0.42 0.88 16 47 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 48 H 0.12 1.94 8.04 -52.48 -0.42 1.51 16 LS Contribution 396.29 15.07 5.97 5.97 Total: -1.00 -30.52 396.29 -12.59 -43.11 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -7.72 Total: 9.01 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -6.09 Total: -15.89 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.28 Total: -58.77 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.52 -12.59 -43.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293181223.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.971 kcal (2) G-P(sol) polarization free energy of solvation -30.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds