Wall clock time and date at job start Sat Apr 11 2020 01:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 6 6 C 1.38624 * 120.40636 * 74.71575 * 5 2 1 7 7 C 1.38585 * 118.56049 * 179.80175 * 6 5 2 8 8 N 1.32285 * 119.19565 * 0.48001 * 7 6 5 9 9 C 1.32480 * 120.74188 * 359.74004 * 8 7 6 10 10 N 1.38411 * 119.21523 * 180.02562 * 9 8 7 11 11 C 1.46503 * 119.99852 * 0.02784 * 10 9 8 12 12 H 1.08996 * 109.47488 * 34.99647 * 11 10 9 13 13 C 1.53004 * 109.46773 * 154.99838 * 11 10 9 14 14 C 1.50704 * 109.47111 * 294.99655 * 13 11 10 15 15 H 1.08003 * 120.00043 * 0.02562 * 14 13 11 16 16 C 1.37874 * 119.99706 * 180.02562 * 14 13 11 17 17 N 1.31508 * 120.00558 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99825 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46713 * 59.99934 * 18 16 14 20 20 H 1.48497 * 109.47129 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47003 * 300.00107 * 18 16 14 22 22 C 1.50695 * 109.47109 * 274.99642 * 11 10 9 23 23 C 1.38238 * 119.99842 * 319.72904 * 22 11 10 24 24 C 1.38235 * 120.00198 * 179.81073 * 23 22 11 25 25 C 1.38235 * 119.99522 * 0.39750 * 24 23 22 26 26 C 1.38236 * 120.00412 * 359.85794 * 25 24 23 27 27 C 1.38232 * 120.00388 * 140.00131 * 22 11 10 28 28 N 1.32265 * 120.40116 * 254.99778 * 5 2 1 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 33 33 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 35 35 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 36 36 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 38 38 H 1.08001 * 120.71892 * 0.02562 * 6 5 2 39 39 H 1.07999 * 120.40087 * 180.20220 * 7 6 5 40 40 H 0.96996 * 120.00006 * 180.02562 * 10 9 8 41 41 H 1.08994 * 109.47394 * 54.99536 * 13 11 10 42 42 H 1.09003 * 109.46700 * 174.99828 * 13 11 10 43 43 H 0.97001 * 120.00240 * 180.02562 * 17 16 14 44 44 H 1.08004 * 120.00391 * 359.97438 * 23 22 11 45 45 H 1.07994 * 120.00582 * 180.22840 * 24 23 22 46 46 H 1.08004 * 119.99860 * 179.83804 * 25 24 23 47 47 H 1.07993 * 120.00055 * 179.97438 * 26 25 24 48 48 H 1.08003 * 119.99680 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0324 -0.7103 -1.2305 6 6 1.9691 -0.0946 -2.4709 7 6 2.4458 -0.7811 -3.5764 8 7 2.9351 -1.9998 -3.4175 9 6 2.9771 -2.5618 -2.2185 10 7 3.4961 -3.8382 -2.0885 11 6 3.9914 -4.5513 -3.2685 12 1 4.4507 -3.8411 -3.9560 13 6 5.0299 -5.5894 -2.8384 14 6 6.2329 -4.8877 -2.2626 15 1 6.2544 -3.8092 -2.2083 16 6 7.3060 -5.6225 -1.8050 17 7 7.2801 -6.9357 -1.8714 18 14 8.7969 -4.7528 -1.0905 19 1 8.3836 -3.9493 0.0880 20 1 9.8054 -5.7602 -0.6743 21 1 9.3871 -3.8574 -2.1178 22 6 2.8430 -5.2444 -3.9554 23 6 1.8646 -5.8696 -3.2051 24 6 0.8091 -6.5020 -3.8350 25 6 0.7363 -6.5163 -5.2153 26 6 1.7175 -5.8957 -5.9657 27 6 2.7709 -5.2599 -5.3357 28 7 2.5339 -1.9309 -1.1410 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 -1.7490 1.2492 36 1 3.1301 -0.7209 1.2493 37 1 1.6767 -0.2075 2.1392 38 1 1.5606 0.8999 -2.5731 39 1 2.4140 -0.3284 -4.5564 40 1 3.5320 -4.2607 -1.2160 41 1 4.5966 -6.2459 -2.0840 42 1 5.3331 -6.1798 -3.7031 43 1 8.0350 -7.4526 -1.5491 44 1 1.9235 -5.8616 -2.1267 45 1 0.0428 -6.9872 -3.2488 46 1 -0.0870 -7.0127 -5.7076 47 1 1.6608 -5.9073 -7.0441 48 1 3.5374 -4.7749 -5.9219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293181223.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:32:53 Heat of formation + Delta-G solvation = 47.756195 kcal Electronic energy + Delta-G solvation = -27533.234819 eV Core-core repulsion = 23972.908626 eV Total energy + Delta-G solvation = -3560.326194 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 8.95 seconds Orbital eigenvalues (eV) -41.97189 -40.32003 -38.33136 -37.12310 -34.97545 -34.07864 -32.86598 -31.74027 -30.90848 -30.22095 -28.11899 -28.10700 -26.72317 -25.41494 -24.07083 -23.74413 -23.26437 -21.60745 -20.38417 -18.95503 -18.50400 -17.88713 -17.53960 -16.71111 -16.60098 -16.28524 -16.02228 -15.87110 -15.53246 -15.00090 -14.88646 -14.81208 -14.50927 -14.44887 -14.19246 -14.16329 -13.66220 -13.42535 -13.18655 -12.96020 -12.95535 -12.66445 -12.56399 -12.49713 -12.24602 -12.17214 -12.05509 -12.02129 -11.90122 -11.69686 -11.51754 -11.39593 -11.34923 -10.90341 -10.62317 -9.87738 -9.75701 -9.52421 -8.87670 -8.23243 -6.33015 0.38354 0.42451 0.52663 0.56448 1.35096 1.36358 1.44727 2.07744 2.36251 2.97520 3.06392 3.10506 3.25219 3.60151 3.81143 4.00697 4.05393 4.08717 4.16856 4.19920 4.21110 4.32089 4.45363 4.52422 4.57891 4.66495 4.75677 4.76572 4.80457 4.81305 4.85619 4.92033 5.02267 5.03707 5.13725 5.17259 5.20000 5.26017 5.33751 5.40348 5.43558 5.48655 5.58087 5.61577 5.64269 5.73374 5.82396 6.10435 6.15964 6.19915 6.30410 6.71473 6.78522 7.35119 7.55537 8.87412 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.007785 B = 0.004933 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3595.707777 B = 5674.912533 C = 8247.856370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.021 4.021 3 C -0.134 4.134 4 C -0.125 4.125 5 C 0.213 3.787 6 C -0.292 4.292 7 C 0.178 3.822 8 N -0.592 5.592 9 C 0.556 3.444 10 N -0.674 5.674 11 C 0.221 3.779 12 H 0.071 0.929 13 C 0.036 3.964 14 C -0.526 4.526 15 H 0.048 0.952 16 C 0.011 3.989 17 N -0.925 5.925 18 Si 0.955 3.045 19 H -0.274 1.274 20 H -0.279 1.279 21 H -0.271 1.271 22 C -0.090 4.090 23 C -0.125 4.125 24 C -0.129 4.129 25 C -0.129 4.129 26 C -0.121 4.121 27 C -0.122 4.122 28 N -0.592 5.592 29 H 0.070 0.930 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.034 0.966 37 H 0.076 0.924 38 H 0.173 0.827 39 H 0.193 0.807 40 H 0.406 0.594 41 H 0.002 0.998 42 H 0.010 0.990 43 H 0.264 0.736 44 H 0.104 0.896 45 H 0.138 0.862 46 H 0.150 0.850 47 H 0.148 0.852 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.904 13.987 -1.598 21.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.022 4.022 3 C -0.191 4.191 4 C -0.182 4.182 5 C 0.065 3.935 6 C -0.318 4.318 7 C 0.011 3.989 8 N -0.316 5.316 9 C 0.200 3.800 10 N -0.307 5.307 11 C 0.116 3.884 12 H 0.089 0.911 13 C -0.001 4.001 14 C -0.564 4.564 15 H 0.066 0.934 16 C -0.187 4.187 17 N -0.565 5.565 18 Si 0.780 3.220 19 H -0.200 1.200 20 H -0.204 1.204 21 H -0.196 1.196 22 C -0.092 4.092 23 C -0.144 4.144 24 C -0.146 4.146 25 C -0.147 4.147 26 C -0.138 4.138 27 C -0.141 4.141 28 N -0.315 5.315 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.190 0.810 39 H 0.210 0.790 40 H 0.243 0.757 41 H 0.021 0.979 42 H 0.028 0.972 43 H 0.073 0.927 44 H 0.122 0.878 45 H 0.156 0.844 46 H 0.168 0.832 47 H 0.165 0.835 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.314 12.764 -1.638 20.779 hybrid contribution 1.108 0.368 0.748 1.386 sum -15.207 13.132 -0.891 20.112 Atomic orbital electron populations 1.21813 0.91323 1.01707 1.03822 1.19694 0.97009 0.95445 0.90056 1.21895 1.00550 0.92605 1.04065 1.21642 1.00019 1.00101 0.96470 1.21857 0.87687 0.87881 0.96100 1.22534 1.10891 1.04988 0.93388 1.23506 0.87112 0.87530 1.00735 1.67964 1.24499 1.14685 1.24470 1.19507 0.87919 0.87323 0.85300 1.44203 1.63871 1.11761 1.10886 1.19694 0.90559 0.92682 0.85467 0.91074 1.19150 0.92302 0.93132 0.95563 1.21302 1.01820 0.92727 1.40574 0.93413 1.25756 1.01322 0.95416 0.96235 1.70056 1.32426 1.06161 1.47871 0.85664 0.79144 0.78315 0.78871 1.19972 1.20412 1.19630 1.20443 0.96198 0.97877 0.94668 1.20982 0.95324 0.98657 0.99423 1.21360 0.98028 0.99508 0.95745 1.21434 0.99734 0.99910 0.93598 1.21401 0.93943 0.97482 1.01019 1.21148 0.99191 1.00238 0.93515 1.67709 1.19739 1.12203 1.31846 0.91051 0.94215 0.89531 0.89733 0.93856 0.90373 0.93634 0.94640 0.90506 0.80980 0.78985 0.75738 0.97929 0.97206 0.92674 0.87824 0.84418 0.83203 0.83472 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.41 71.98 0.61 -1.51 16 2 C -0.02 -0.44 0.88 -52.93 -0.05 -0.48 16 3 C -0.13 -2.06 8.10 71.98 0.58 -1.48 16 4 C -0.12 -2.94 7.83 71.98 0.56 -2.37 16 5 C 0.21 5.99 5.57 42.59 0.24 6.23 16 6 C -0.29 -6.93 9.20 22.44 0.21 -6.73 16 7 C 0.18 4.83 11.30 84.71 0.96 5.79 16 8 N -0.59 -21.62 9.20 -198.00 -1.82 -23.44 16 9 C 0.56 21.97 8.40 261.49 2.20 24.16 16 10 N -0.67 -28.52 4.19 -334.01 -1.40 -29.91 16 11 C 0.22 9.77 2.11 44.24 0.09 9.86 16 12 H 0.07 3.34 7.37 -2.39 -0.02 3.32 16 13 C 0.04 1.90 4.49 29.85 0.13 2.03 16 14 C -0.53 -29.99 8.84 25.60 0.23 -29.76 16 15 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 16 C 0.01 0.65 5.46 84.65 0.46 1.12 16 17 N -0.93 -55.83 13.29 21.45 0.28 -55.54 16 18 Si 0.95 45.37 29.54 68.60 2.03 47.39 16 19 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 22 C -0.09 -3.53 4.93 -19.87 -0.10 -3.63 16 23 C -0.13 -4.58 9.32 22.27 0.21 -4.37 16 24 C -0.13 -3.83 10.05 22.27 0.22 -3.60 16 25 C -0.13 -3.38 10.05 22.27 0.22 -3.16 16 26 C -0.12 -3.37 10.05 22.27 0.22 -3.15 16 27 C -0.12 -4.23 9.67 22.27 0.22 -4.02 16 28 N -0.59 -21.36 9.21 -186.03 -1.71 -23.07 16 29 H 0.07 0.99 8.11 -2.39 -0.02 0.97 16 30 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.93 6.79 -2.39 -0.02 0.91 16 35 H 0.04 1.24 7.88 -2.39 -0.02 1.22 16 36 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.17 2.64 6.85 -2.91 -0.02 2.62 16 39 H 0.19 3.63 8.06 -2.91 -0.02 3.61 16 40 H 0.41 17.64 8.72 -92.71 -0.81 16.83 16 41 H 0.00 0.13 8.14 -2.39 -0.02 0.12 16 42 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 44 H 0.10 3.89 7.73 -2.91 -0.02 3.87 16 45 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 46 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 47 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 48 H 0.12 4.01 8.04 -2.91 -0.02 3.99 16 Total: -1.00 -70.40 396.29 4.72 -65.67 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: 0.13 Total: 33.97 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: 7.21 Total: -15.07 kcal Atomic # 7 Polarization: -127.32 SS G_CDS: -4.65 Total: -131.97 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -70.40 4.72 -65.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293181223.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.430 kcal (2) G-P(sol) polarization free energy of solvation -70.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.95 seconds