Wall clock time and date at job start Sat Apr 11 2020 01:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47229 * 2 1 4 4 C 1.52998 * 109.46892 * 239.99993 * 2 1 3 5 5 C 1.50699 * 109.46762 * 119.99708 * 2 1 3 6 6 C 1.38636 * 120.39939 * 75.00348 * 5 2 1 7 7 C 1.38579 * 118.55446 * 180.02562 * 6 5 2 8 8 N 1.32291 * 119.20392 * 0.02562 * 7 6 5 9 9 C 1.32482 * 120.73812 * 359.97438 * 8 7 6 10 10 N 1.38405 * 119.21543 * 179.97438 * 9 8 7 11 11 C 1.46503 * 120.00128 * 0.02562 * 10 9 8 12 12 H 1.09000 * 109.46877 * 324.99359 * 11 10 9 13 13 C 1.53001 * 109.46939 * 204.99585 * 11 10 9 14 14 C 1.50694 * 109.47168 * 64.99689 * 13 11 10 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 13 11 16 16 C 1.37885 * 119.99902 * 179.97438 * 14 13 11 17 17 N 1.31518 * 119.99792 * 179.72330 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47088 * 89.99795 * 18 16 14 20 20 H 1.48495 * 109.47293 * 209.99997 * 18 16 14 21 21 H 1.48507 * 109.47015 * 329.99955 * 18 16 14 22 22 C 1.50701 * 109.47469 * 84.99321 * 11 10 9 23 23 C 1.38240 * 119.99660 * 39.72407 * 22 11 10 24 24 C 1.38231 * 119.99610 * 179.78637 * 23 22 11 25 25 C 1.38242 * 120.00125 * 0.44819 * 24 23 22 26 26 C 1.38229 * 119.99825 * 359.80878 * 25 24 23 27 27 C 1.38227 * 120.00009 * 220.00154 * 22 11 10 28 28 N 1.32261 * 120.40225 * 255.29318 * 5 2 1 29 29 H 1.09002 * 109.47086 * 300.00299 * 1 2 3 30 30 H 1.08993 * 109.46713 * 59.99969 * 1 2 3 31 31 H 1.08999 * 109.46969 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46988 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46986 * 300.00044 * 3 2 1 34 34 H 1.09004 * 109.46881 * 60.00123 * 3 2 1 35 35 H 1.08999 * 109.47101 * 299.99659 * 4 2 1 36 36 H 1.08993 * 109.47411 * 60.00465 * 4 2 1 37 37 H 1.09005 * 109.46600 * 179.97438 * 4 2 1 38 38 H 1.08002 * 120.71964 * 359.97438 * 6 5 2 39 39 H 1.08007 * 120.39835 * 179.97438 * 7 6 5 40 40 H 0.96998 * 119.99849 * 179.97438 * 10 9 8 41 41 H 1.08998 * 109.46837 * 304.99711 * 13 11 10 42 42 H 1.09002 * 109.46926 * 184.99514 * 13 11 10 43 43 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 44 44 H 1.08002 * 119.99993 * 0.02562 * 23 22 11 45 45 H 1.07997 * 120.00249 * 180.28043 * 24 23 22 46 46 H 1.08003 * 120.00084 * 179.83155 * 25 24 23 47 47 H 1.08004 * 120.00042 * 180.02562 * 26 25 24 48 48 H 1.08005 * 120.00295 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.9744 -2.0929 1.3152 7 6 2.4464 -2.7065 2.4646 8 7 2.9347 -1.9595 3.4411 9 6 2.9758 -0.6401 3.3285 10 7 3.4928 0.1110 4.3698 11 6 3.9869 -0.5542 5.5780 12 1 3.3731 -1.4303 5.7872 13 6 3.9128 0.4144 6.7600 14 6 2.4712 0.7457 7.0484 15 1 1.6863 0.3094 6.4484 16 6 2.1543 1.6059 8.0783 17 7 0.8965 1.8992 8.3265 18 14 3.5117 2.3612 9.1157 19 1 3.9433 3.6452 8.5073 20 1 3.0050 2.6097 10.4892 21 1 4.6662 1.4289 9.1751 22 6 5.4167 -0.9813 5.3673 23 6 6.2931 -0.1527 4.6918 24 6 7.6057 -0.5425 4.5024 25 6 8.0396 -1.7649 4.9805 26 6 7.1618 -2.5957 5.6513 27 6 5.8502 -2.2040 5.8446 28 7 2.5284 -0.0220 2.2451 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6768 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2494 38 1 1.5694 -2.6789 0.5033 39 1 2.4152 -3.7817 2.5623 40 1 3.5286 1.0777 4.2993 41 1 4.4536 1.3285 6.5150 42 1 4.3618 -0.0492 7.6384 43 1 0.6735 2.5040 9.0513 44 1 5.9532 0.8008 4.3153 45 1 8.2916 0.1067 3.9786 46 1 9.0645 -2.0707 4.8301 47 1 7.5008 -3.5506 6.0252 48 1 5.1644 -2.8531 6.3688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293181228.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:33:03 Heat of formation + Delta-G solvation = 64.976517 kcal Electronic energy + Delta-G solvation = -27564.164928 eV Core-core repulsion = 24004.585463 eV Total energy + Delta-G solvation = -3559.579465 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.76254 -39.11781 -37.26878 -35.81145 -33.13768 -32.60833 -31.59662 -30.59632 -29.70393 -28.97923 -27.35007 -27.17298 -25.13416 -24.16171 -22.84670 -22.16170 -21.72773 -20.26373 -19.26007 -17.56199 -17.05624 -16.66609 -16.27733 -15.60849 -15.06436 -14.84465 -14.67747 -14.56688 -14.26761 -13.92288 -13.84044 -13.55175 -13.46845 -13.12319 -13.03583 -12.58221 -12.42590 -12.36405 -12.16799 -11.87060 -11.69297 -11.30564 -11.25498 -11.16847 -11.08464 -11.03390 -10.76097 -10.60198 -10.44454 -10.23932 -10.16944 -9.95160 -9.65116 -9.28180 -8.65181 -8.61771 -8.58782 -8.30966 -7.55179 -6.09231 -4.08746 1.54918 1.62210 1.68964 1.71789 3.26525 3.34968 3.37772 3.41431 4.13846 4.28617 4.32222 4.39626 4.62271 4.86642 4.96121 5.10572 5.17049 5.19235 5.23367 5.26327 5.32289 5.44163 5.48280 5.55196 5.60593 5.64177 5.71631 5.79435 5.83046 5.84817 5.85647 5.92937 6.02085 6.04590 6.19944 6.24756 6.25796 6.31282 6.43371 6.45690 6.61854 6.75467 6.76929 6.93971 7.00308 7.12254 7.31656 7.42637 7.64227 7.68191 8.05670 8.45597 8.85339 8.96794 9.51449 11.03716 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.009099 B = 0.004539 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3076.536162 B = 6166.666608 C = 8183.424417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.020 4.020 3 C -0.128 4.128 4 C -0.137 4.137 5 C 0.231 3.769 6 C -0.308 4.308 7 C 0.191 3.809 8 N -0.566 5.566 9 C 0.577 3.423 10 N -0.664 5.664 11 C 0.209 3.791 12 H 0.096 0.904 13 C -0.015 4.015 14 C -0.518 4.518 15 H 0.075 0.925 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.875 3.125 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.074 4.074 23 C -0.108 4.108 24 C -0.126 4.126 25 C -0.134 4.134 26 C -0.124 4.124 27 C -0.105 4.105 28 N -0.569 5.569 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.133 0.867 39 H 0.158 0.842 40 H 0.414 0.586 41 H 0.018 0.982 42 H 0.036 0.964 43 H 0.263 0.737 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.116 0.884 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.780 -7.504 -16.269 19.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.022 4.022 3 C -0.185 4.185 4 C -0.195 4.195 5 C 0.081 3.919 6 C -0.335 4.335 7 C 0.022 3.978 8 N -0.290 5.290 9 C 0.221 3.779 10 N -0.297 5.297 11 C 0.104 3.896 12 H 0.114 0.886 13 C -0.052 4.052 14 C -0.556 4.556 15 H 0.093 0.907 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.702 3.298 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.076 4.076 23 C -0.127 4.127 24 C -0.144 4.144 25 C -0.152 4.152 26 C -0.142 4.142 27 C -0.123 4.123 28 N -0.291 5.291 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.151 0.849 39 H 0.175 0.825 40 H 0.251 0.749 41 H 0.036 0.964 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.131 0.869 47 H 0.134 0.866 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.117 -6.898 -15.136 18.093 hybrid contribution 0.290 0.297 0.000 0.415 sum 7.407 -6.601 -15.136 18.098 Atomic orbital electron populations 1.21846 0.92903 1.02210 1.02436 1.19532 0.95962 0.96026 0.90633 1.21677 1.01138 0.93878 1.01805 1.21896 1.01258 1.00295 0.96029 1.21114 0.88324 0.90358 0.92124 1.22130 1.12800 0.96198 1.02342 1.22797 0.87891 0.99707 0.87364 1.67953 1.23630 1.05475 1.31892 1.19382 0.86764 0.85549 0.86233 1.44282 1.63067 1.08568 1.13746 1.19981 0.88298 0.97435 0.83887 0.88626 1.19895 0.98895 0.93985 0.92473 1.20988 0.90508 1.27853 1.16262 0.90724 1.24982 0.95181 0.95992 0.96926 1.69910 1.16983 1.35815 1.30934 0.86855 0.82862 0.80085 0.79989 1.20265 1.21314 1.18920 1.20613 0.96959 0.93887 0.96128 1.20949 0.93158 0.99582 0.98961 1.21047 0.95888 0.96712 1.00738 1.21006 0.99211 0.95010 0.99984 1.21052 0.93843 0.99511 0.99784 1.21012 0.95768 0.95843 0.99684 1.67685 1.18862 1.40878 1.01713 0.92090 0.91844 0.92339 0.92675 0.93056 0.91296 0.92106 0.91913 0.92522 0.84863 0.82453 0.74853 0.96356 0.94626 0.92668 0.86612 0.86800 0.86855 0.86574 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.41 37.16 0.31 -1.11 16 2 C -0.02 -0.24 0.88 -155.66 -0.14 -0.37 16 3 C -0.13 -1.51 7.84 37.16 0.29 -1.22 16 4 C -0.14 -1.24 8.10 37.16 0.30 -0.93 16 5 C 0.23 3.38 5.56 -82.26 -0.46 2.92 16 6 C -0.31 -4.06 9.21 -39.31 -0.36 -4.42 16 7 C 0.19 2.75 11.30 -17.23 -0.19 2.56 16 8 N -0.57 -10.17 9.20 -13.93 -0.13 -10.29 16 9 C 0.58 10.93 8.40 -322.80 -2.71 8.22 16 10 N -0.66 -12.88 4.16 -56.92 -0.24 -13.11 16 11 C 0.21 4.15 2.11 -69.08 -0.15 4.01 16 12 H 0.10 2.05 7.37 -51.93 -0.38 1.66 16 13 C -0.01 -0.34 3.56 -27.89 -0.10 -0.44 16 14 C -0.52 -14.18 9.39 -34.44 -0.32 -14.50 16 15 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 16 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 17 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 18 Si 0.87 21.23 27.47 -169.99 -4.67 16.56 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 22 C -0.07 -1.31 4.93 -104.62 -0.52 -1.83 16 23 C -0.11 -1.79 9.33 -39.58 -0.37 -2.15 16 24 C -0.13 -1.82 10.05 -39.58 -0.40 -2.21 16 25 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 26 C -0.12 -1.74 10.05 -39.58 -0.40 -2.13 16 27 C -0.10 -1.68 9.67 -39.58 -0.38 -2.07 16 28 N -0.57 -10.02 9.21 -10.15 -0.09 -10.11 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.95 7.88 -51.93 -0.41 0.54 16 35 H 0.06 0.49 6.79 -51.93 -0.35 0.14 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.13 1.34 6.83 -52.49 -0.36 0.98 16 39 H 0.16 1.71 8.06 -52.48 -0.42 1.28 16 40 H 0.41 8.00 8.72 -40.82 -0.36 7.64 16 41 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 42 H 0.04 0.83 7.20 -51.93 -0.37 0.45 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.12 1.87 7.71 -52.49 -0.40 1.47 16 45 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 46 H 0.11 1.23 8.06 -52.48 -0.42 0.80 16 47 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 48 H 0.12 1.86 8.04 -52.48 -0.42 1.43 16 LS Contribution 392.66 15.07 5.92 5.92 Total: -1.00 -31.53 392.66 -12.21 -43.74 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -7.69 Total: 9.78 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -6.08 Total: -15.98 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.31 Total: -60.02 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.53 -12.21 -43.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293181228.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.716 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds