Wall clock time and date at job start Sat Apr 11 2020 01:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47229 * 2 1 4 4 C 1.52998 * 109.46892 * 239.99993 * 2 1 3 5 5 C 1.50699 * 109.46762 * 119.99708 * 2 1 3 6 6 C 1.38636 * 120.39939 * 75.00348 * 5 2 1 7 7 C 1.38579 * 118.55446 * 180.02562 * 6 5 2 8 8 N 1.32291 * 119.20392 * 0.02562 * 7 6 5 9 9 C 1.32482 * 120.73812 * 359.97438 * 8 7 6 10 10 N 1.38405 * 119.21543 * 179.97438 * 9 8 7 11 11 C 1.46503 * 120.00128 * 0.02562 * 10 9 8 12 12 H 1.09000 * 109.46877 * 324.99359 * 11 10 9 13 13 C 1.53001 * 109.46939 * 204.99585 * 11 10 9 14 14 C 1.50694 * 109.47168 * 64.99689 * 13 11 10 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 13 11 16 16 C 1.37885 * 119.99902 * 179.97438 * 14 13 11 17 17 N 1.31518 * 119.99792 * 179.72330 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47088 * 89.99795 * 18 16 14 20 20 H 1.48495 * 109.47293 * 209.99997 * 18 16 14 21 21 H 1.48507 * 109.47015 * 329.99955 * 18 16 14 22 22 C 1.50701 * 109.47469 * 84.99321 * 11 10 9 23 23 C 1.38240 * 119.99660 * 39.72407 * 22 11 10 24 24 C 1.38231 * 119.99610 * 179.78637 * 23 22 11 25 25 C 1.38242 * 120.00125 * 0.44819 * 24 23 22 26 26 C 1.38229 * 119.99825 * 359.80878 * 25 24 23 27 27 C 1.38227 * 120.00009 * 220.00154 * 22 11 10 28 28 N 1.32261 * 120.40225 * 255.29318 * 5 2 1 29 29 H 1.09002 * 109.47086 * 300.00299 * 1 2 3 30 30 H 1.08993 * 109.46713 * 59.99969 * 1 2 3 31 31 H 1.08999 * 109.46969 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46988 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46986 * 300.00044 * 3 2 1 34 34 H 1.09004 * 109.46881 * 60.00123 * 3 2 1 35 35 H 1.08999 * 109.47101 * 299.99659 * 4 2 1 36 36 H 1.08993 * 109.47411 * 60.00465 * 4 2 1 37 37 H 1.09005 * 109.46600 * 179.97438 * 4 2 1 38 38 H 1.08002 * 120.71964 * 359.97438 * 6 5 2 39 39 H 1.08007 * 120.39835 * 179.97438 * 7 6 5 40 40 H 0.96998 * 119.99849 * 179.97438 * 10 9 8 41 41 H 1.08998 * 109.46837 * 304.99711 * 13 11 10 42 42 H 1.09002 * 109.46926 * 184.99514 * 13 11 10 43 43 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 44 44 H 1.08002 * 119.99993 * 0.02562 * 23 22 11 45 45 H 1.07997 * 120.00249 * 180.28043 * 24 23 22 46 46 H 1.08003 * 120.00084 * 179.83155 * 25 24 23 47 47 H 1.08004 * 120.00042 * 180.02562 * 26 25 24 48 48 H 1.08005 * 120.00295 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.9744 -2.0929 1.3152 7 6 2.4464 -2.7065 2.4646 8 7 2.9347 -1.9595 3.4411 9 6 2.9758 -0.6401 3.3285 10 7 3.4928 0.1110 4.3698 11 6 3.9869 -0.5542 5.5780 12 1 3.3731 -1.4303 5.7872 13 6 3.9128 0.4144 6.7600 14 6 2.4712 0.7457 7.0484 15 1 1.6863 0.3094 6.4484 16 6 2.1543 1.6059 8.0783 17 7 0.8965 1.8992 8.3265 18 14 3.5117 2.3612 9.1157 19 1 3.9433 3.6452 8.5073 20 1 3.0050 2.6097 10.4892 21 1 4.6662 1.4289 9.1751 22 6 5.4167 -0.9813 5.3673 23 6 6.2931 -0.1527 4.6918 24 6 7.6057 -0.5425 4.5024 25 6 8.0396 -1.7649 4.9805 26 6 7.1618 -2.5957 5.6513 27 6 5.8502 -2.2040 5.8446 28 7 2.5284 -0.0220 2.2451 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6768 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2494 38 1 1.5694 -2.6789 0.5033 39 1 2.4152 -3.7817 2.5623 40 1 3.5286 1.0777 4.2993 41 1 4.4536 1.3285 6.5150 42 1 4.3618 -0.0492 7.6384 43 1 0.6735 2.5040 9.0513 44 1 5.9532 0.8008 4.3153 45 1 8.2916 0.1067 3.9786 46 1 9.0645 -2.0707 4.8301 47 1 7.5008 -3.5506 6.0252 48 1 5.1644 -2.8531 6.3688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293181228.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:32:57 Heat of formation + Delta-G solvation = 50.051162 kcal Electronic energy + Delta-G solvation = -27564.812140 eV Core-core repulsion = 24004.585463 eV Total energy + Delta-G solvation = -3560.226677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 5.42 seconds Orbital eigenvalues (eV) -41.98278 -40.34953 -38.34467 -37.15727 -34.92506 -34.10842 -32.97806 -31.74660 -31.06840 -30.54248 -28.14421 -28.11419 -26.74018 -25.38655 -24.08539 -23.48197 -23.23113 -21.60845 -20.40102 -19.09976 -18.82066 -17.91813 -17.54991 -16.71153 -16.43906 -16.35525 -15.98840 -15.83595 -15.58623 -15.09382 -14.93924 -14.79605 -14.62736 -14.47144 -14.30271 -14.16320 -13.88414 -13.57550 -13.19735 -13.05661 -12.95598 -12.56762 -12.48960 -12.41640 -12.19474 -12.09620 -12.04850 -11.98690 -11.82758 -11.79981 -11.54417 -11.41407 -11.39535 -10.94217 -10.80455 -9.89699 -9.76335 -9.55238 -8.89306 -8.30878 -6.35283 0.36938 0.41122 0.50691 0.55858 1.33479 1.35273 1.46869 2.05936 2.32938 2.95639 3.04478 3.05599 3.24215 3.58873 3.79911 3.95272 4.04579 4.07664 4.15486 4.18848 4.20223 4.31541 4.38615 4.50329 4.55364 4.60624 4.73116 4.75641 4.76003 4.79682 4.84762 4.91045 5.01732 5.02709 5.04304 5.14178 5.16467 5.18444 5.24919 5.28460 5.41974 5.48802 5.53082 5.54973 5.64347 5.65171 5.80046 6.08752 6.17630 6.23532 6.29039 6.67390 6.72506 7.28243 7.53953 8.85958 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.009099 B = 0.004539 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3076.536162 B = 6166.666608 C = 8183.424417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.021 4.021 3 C -0.124 4.124 4 C -0.131 4.131 5 C 0.213 3.787 6 C -0.292 4.292 7 C 0.177 3.823 8 N -0.592 5.592 9 C 0.556 3.444 10 N -0.676 5.676 11 C 0.225 3.775 12 H 0.069 0.931 13 C -0.006 4.006 14 C -0.516 4.516 15 H 0.026 0.974 16 C 0.010 3.990 17 N -0.949 5.949 18 Si 0.947 3.053 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.247 1.247 22 C -0.093 4.093 23 C -0.124 4.124 24 C -0.127 4.127 25 C -0.127 4.127 26 C -0.121 4.121 27 C -0.120 4.120 28 N -0.592 5.592 29 H 0.032 0.968 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.173 0.827 39 H 0.194 0.806 40 H 0.407 0.593 41 H 0.025 0.975 42 H 0.037 0.963 43 H 0.266 0.734 44 H 0.108 0.892 45 H 0.139 0.861 46 H 0.149 0.851 47 H 0.146 0.854 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.253 -8.921 -18.191 22.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.022 4.022 3 C -0.181 4.181 4 C -0.188 4.188 5 C 0.064 3.936 6 C -0.318 4.318 7 C 0.010 3.990 8 N -0.316 5.316 9 C 0.199 3.801 10 N -0.309 5.309 11 C 0.120 3.880 12 H 0.087 0.913 13 C -0.044 4.044 14 C -0.554 4.554 15 H 0.045 0.955 16 C -0.187 4.187 17 N -0.590 5.590 18 Si 0.770 3.230 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.170 1.170 22 C -0.094 4.094 23 C -0.142 4.142 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.138 4.138 27 C -0.139 4.139 28 N -0.315 5.315 29 H 0.051 0.949 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.191 0.809 39 H 0.210 0.790 40 H 0.244 0.756 41 H 0.044 0.956 42 H 0.055 0.945 43 H 0.075 0.925 44 H 0.126 0.874 45 H 0.157 0.843 46 H 0.167 0.833 47 H 0.164 0.836 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.585 -8.359 -17.106 21.316 hybrid contribution -0.569 0.646 0.446 0.970 sum 9.016 -7.713 -16.661 20.454 Atomic orbital electron populations 1.21841 0.91977 1.02950 1.02268 1.19699 0.96560 0.95549 0.90412 1.21634 1.00357 0.94565 1.01574 1.21873 1.00781 1.01080 0.95097 1.21873 0.87750 0.91574 0.92383 1.22547 1.10764 0.95790 1.02692 1.23510 0.87198 1.01196 0.87078 1.67956 1.24803 1.05282 1.33551 1.19518 0.87799 0.86144 0.86647 1.44162 1.64359 1.08203 1.14131 1.19535 0.89924 0.95367 0.83193 0.91297 1.19750 0.95576 0.95070 0.94008 1.21153 0.91907 1.27057 1.15262 0.95530 1.25920 0.97715 0.96606 0.98454 1.70074 1.19558 1.37217 1.32117 0.85713 0.79875 0.79572 0.77832 1.19218 1.21013 1.17016 1.20385 0.95490 0.95284 0.98255 1.21008 0.94270 0.99451 0.99492 1.21366 0.95143 0.97605 1.00403 1.21446 1.00717 0.94085 0.98262 1.21399 0.92717 1.00720 0.98995 1.21153 0.97147 0.95439 1.00160 1.67709 1.19672 1.41828 1.02268 0.94916 0.89345 0.91140 0.93814 0.90492 0.94226 0.90535 0.89748 0.93264 0.80939 0.78956 0.75644 0.95648 0.94529 0.92543 0.87369 0.84331 0.83304 0.83579 0.86158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.41 71.98 0.61 -1.97 16 2 C -0.02 -0.46 0.88 -52.92 -0.05 -0.51 16 3 C -0.12 -2.93 7.84 71.98 0.56 -2.37 16 4 C -0.13 -1.96 8.10 71.98 0.58 -1.37 16 5 C 0.21 6.20 5.56 42.59 0.24 6.44 16 6 C -0.29 -7.23 9.21 22.45 0.21 -7.02 16 7 C 0.18 4.97 11.30 84.71 0.96 5.93 16 8 N -0.59 -22.04 9.20 -197.99 -1.82 -23.86 16 9 C 0.56 22.32 8.40 261.48 2.20 24.51 16 10 N -0.68 -28.25 4.16 -334.00 -1.39 -29.64 16 11 C 0.23 9.50 2.11 44.25 0.09 9.59 16 12 H 0.07 3.20 7.37 -2.39 -0.02 3.18 16 13 C -0.01 -0.30 3.56 29.85 0.11 -0.19 16 14 C -0.52 -29.90 9.39 25.60 0.24 -29.66 16 15 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 16 C 0.01 0.59 5.47 84.66 0.46 1.05 16 17 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 18 Si 0.95 44.59 27.47 68.60 1.88 46.47 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 21 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 22 C -0.09 -3.33 4.93 -19.87 -0.10 -3.43 16 23 C -0.12 -4.08 9.33 22.27 0.21 -3.87 16 24 C -0.13 -3.39 10.05 22.27 0.22 -3.17 16 25 C -0.13 -3.00 10.05 22.27 0.22 -2.77 16 26 C -0.12 -3.06 10.05 22.27 0.22 -2.84 16 27 C -0.12 -3.83 9.67 22.27 0.22 -3.62 16 28 N -0.59 -21.93 9.21 -186.02 -1.71 -23.64 16 29 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 1.19 8.12 -2.39 -0.02 1.17 16 32 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.04 1.15 7.88 -2.39 -0.02 1.13 16 35 H 0.08 0.91 6.79 -2.39 -0.02 0.89 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.17 2.81 6.83 -2.91 -0.02 2.79 16 39 H 0.19 3.79 8.06 -2.91 -0.02 3.77 16 40 H 0.41 17.26 8.72 -92.71 -0.81 16.45 16 41 H 0.03 1.16 7.57 -2.39 -0.02 1.14 16 42 H 0.04 1.72 7.20 -2.39 -0.02 1.70 16 43 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 44 H 0.11 3.62 7.71 -2.91 -0.02 3.59 16 45 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 46 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 47 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 48 H 0.12 3.73 8.04 -2.91 -0.02 3.71 16 Total: -1.00 -73.99 392.66 4.54 -69.45 By element: Atomic # 1 Polarization: 36.43 SS G_CDS: 0.08 Total: 36.51 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 7.20 Total: -15.26 kcal Atomic # 7 Polarization: -132.54 SS G_CDS: -4.63 Total: -137.17 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.47 kcal Total: -73.99 4.54 -69.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293181228.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.502 kcal (2) G-P(sol) polarization free energy of solvation -73.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.42 seconds