Wall clock time and date at job start Sat Apr 11 2020 01:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.50701 * 109.47212 * 174.99684 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46890 * 120.00210 * 9 7 5 12 12 H 1.48501 * 109.47062 * 240.00257 * 9 7 5 13 13 N 1.46904 * 109.47162 * 119.99452 * 2 1 3 14 14 C 1.46960 * 110.99744 * 58.80696 * 13 2 1 15 15 C 1.53050 * 109.36512 * 176.80976 * 14 13 2 16 16 N 1.46960 * 109.36484 * 58.39776 * 15 14 13 17 17 C 1.39374 * 110.99837 * 176.81065 * 16 15 14 18 18 C 1.37992 * 120.78777 * 63.80036 * 17 16 15 19 19 N 1.32483 * 121.57797 * 180.02562 * 18 17 16 20 20 C 1.31234 * 122.87438 * 0.02562 * 19 18 17 21 21 C 1.40410 * 120.21214 * 0.02562 * 20 19 18 22 22 C 1.40418 * 121.98053 * 179.97438 * 21 20 19 23 23 C 1.36171 * 119.52212 * 179.97438 * 22 21 20 24 24 C 1.39354 * 121.07361 * 359.97438 * 23 22 21 25 25 C 1.36266 * 120.99557 * 0.04658 * 24 23 22 26 26 C 1.40078 * 119.49197 * 359.65706 * 25 24 23 27 27 C 1.46951 * 110.87860 * 300.68066 * 16 15 14 28 28 C 1.46947 * 111.00539 * 295.00479 * 13 2 1 29 29 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 30 30 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 32 32 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 33 33 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 34 34 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.48599 * 296.77974 * 14 13 2 36 36 H 1.09000 * 109.49267 * 56.83572 * 14 13 2 37 37 H 1.08995 * 109.48592 * 298.42880 * 15 14 13 38 38 H 1.09001 * 109.50299 * 178.37643 * 15 14 13 39 39 H 1.08000 * 119.20938 * 0.02620 * 18 17 16 40 40 H 1.07996 * 119.89255 * 180.02562 * 20 19 18 41 41 H 1.07998 * 120.23413 * 0.02562 * 22 21 20 42 42 H 1.07997 * 119.45966 * 180.02562 * 23 22 21 43 43 H 1.08006 * 119.49940 * 180.02562 * 24 23 22 44 44 H 1.08003 * 120.25635 * 179.97438 * 25 24 23 45 45 H 1.08998 * 109.49134 * 299.35228 * 27 16 15 46 46 H 1.09007 * 109.50341 * 179.29911 * 27 16 15 47 47 H 1.09006 * 109.48668 * 303.15646 * 28 13 2 48 48 H 1.08998 * 109.48895 * 63.21570 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2994 9 14 6.0922 -1.0621 -2.4360 10 1 6.5838 -0.2925 -1.2650 11 1 6.6856 -2.4233 -2.4178 12 1 6.4871 -0.3665 -3.6872 13 7 2.0196 -0.6924 1.1995 14 6 1.5252 -2.0755 1.2479 15 6 2.1202 -2.7848 2.4667 16 7 1.7490 -2.0528 3.6858 17 6 2.2136 -2.7098 4.8238 18 6 3.5665 -2.8667 5.0459 19 7 4.0253 -3.4889 6.1218 20 6 3.2382 -3.9950 7.0420 21 6 1.8437 -3.8918 6.9136 22 6 0.9673 -4.4200 7.8752 23 6 -0.3770 -4.2910 7.7006 24 6 -0.8982 -3.6423 6.5828 25 6 -0.0775 -3.1180 5.6296 26 6 1.3110 -3.2267 5.7794 27 6 2.2435 -0.6698 3.6373 28 6 1.6485 0.0394 2.4186 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6054 -0.2617 -2.1370 33 1 1.7517 -1.7715 -1.2055 34 1 4.0609 -2.2444 -4.0348 35 1 0.4379 -2.0705 1.3249 36 1 1.8233 -2.6003 0.3403 37 1 3.2060 -2.8138 2.3763 38 1 1.7324 -3.8020 2.5210 39 1 4.2681 -2.4729 4.3255 40 1 3.6643 -4.4924 7.9006 41 1 1.3567 -4.9243 8.7472 42 1 -1.0501 -4.6973 8.4410 43 1 -1.9687 -3.5540 6.4701 44 1 -0.4943 -2.6180 4.7678 45 1 3.3307 -0.6748 3.5603 46 1 1.9456 -0.1448 4.5450 47 1 2.0366 1.0566 2.3644 48 1 0.5627 0.0685 2.5089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298359013.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:33:31 Heat of formation + Delta-G solvation = 72.476299 kcal Electronic energy + Delta-G solvation = -27763.708883 eV Core-core repulsion = 24204.454633 eV Total energy + Delta-G solvation = -3559.254250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.17931 -39.23746 -37.50952 -36.36091 -33.15397 -32.17905 -31.35058 -30.79126 -30.50702 -28.78592 -27.33181 -25.72255 -23.89084 -23.74460 -23.49561 -22.87185 -21.65477 -20.21421 -18.77064 -17.93788 -17.62189 -16.93039 -16.18160 -15.94160 -15.20632 -15.01090 -14.93283 -14.58168 -14.28051 -14.17689 -14.03027 -13.91366 -13.69168 -13.33615 -12.96595 -12.92505 -12.29023 -12.17487 -12.08248 -11.96214 -11.74949 -11.57847 -11.29417 -11.21132 -11.07875 -10.77141 -10.58703 -10.44760 -10.32902 -10.06877 -9.91459 -9.89298 -9.24843 -9.17210 -8.98411 -8.37934 -8.28086 -8.08538 -7.50790 -5.90941 -3.88870 0.17921 0.73998 1.73775 2.89688 3.36927 3.44876 3.50106 3.66589 3.90208 4.36061 4.44955 4.48853 4.55539 4.62558 4.68613 4.72146 4.94771 5.09649 5.13879 5.30888 5.37052 5.44645 5.47882 5.49098 5.58534 5.61467 5.72131 5.74796 5.77706 5.83069 5.91632 5.94270 5.95282 6.04484 6.13823 6.21698 6.24625 6.35057 6.38597 6.45423 6.57387 6.67098 6.67309 6.94489 6.96945 7.24430 7.51432 7.65588 7.85421 7.87063 7.98536 8.10569 8.55629 9.17685 9.73347 11.20922 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016872 B = 0.003206 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.199162 B = 8731.878928 C = 9718.822159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.088 3.912 3 H 0.070 0.930 4 C 0.028 3.972 5 C -0.490 4.490 6 H 0.061 0.939 7 C 0.051 3.949 8 N -0.903 5.903 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.512 5.512 14 C 0.059 3.941 15 C 0.064 3.936 16 N -0.501 5.501 17 C 0.073 3.927 18 C 0.045 3.955 19 N -0.476 5.476 20 C 0.128 3.872 21 C -0.105 4.105 22 C -0.097 4.097 23 C -0.116 4.116 24 C -0.114 4.114 25 C -0.083 4.083 26 C -0.013 4.013 27 C 0.064 3.936 28 C 0.054 3.946 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.041 0.959 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.257 0.743 35 H 0.035 0.965 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.153 0.847 40 H 0.161 0.839 41 H 0.131 0.869 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.140 0.860 45 H 0.049 0.951 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.799 -3.450 22.128 24.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.020 4.020 3 H 0.088 0.912 4 C -0.009 4.009 5 C -0.529 4.529 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.544 5.544 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.236 5.236 14 C -0.069 4.069 15 C -0.062 4.062 16 N -0.224 5.224 17 C -0.023 4.023 18 C -0.101 4.101 19 N -0.183 5.183 20 C -0.042 4.042 21 C -0.108 4.108 22 C -0.117 4.117 23 C -0.134 4.134 24 C -0.133 4.133 25 C -0.101 4.101 26 C -0.018 4.018 27 C -0.062 4.062 28 C -0.074 4.074 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.117 0.883 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.170 0.830 40 H 0.178 0.822 41 H 0.149 0.851 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.158 0.842 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.824 -3.518 21.894 23.515 hybrid contribution 0.099 0.063 -0.267 0.291 sum -7.726 -3.456 21.628 23.224 Atomic orbital electron populations 1.22509 0.99697 1.01335 1.00692 1.21900 0.90098 0.98411 0.91607 0.91178 1.19234 0.96405 0.95336 0.89903 1.21205 0.91759 1.32942 1.06983 0.92108 1.25003 0.97984 0.95874 0.95995 1.69969 1.35126 1.36948 1.12353 0.86599 0.86482 0.77584 0.77691 1.19790 1.21328 1.21388 1.62293 1.58899 1.01321 1.01048 1.22174 0.96753 0.90510 0.97502 1.22325 0.99707 0.96605 0.87581 1.59617 1.59690 1.02624 1.00448 1.19710 0.91887 0.97624 0.93114 1.23123 0.94293 0.97374 0.95357 1.67298 1.40651 1.08372 1.01978 1.23115 0.88560 0.95534 0.97021 1.19033 0.95388 1.00530 0.95850 1.20926 0.93249 0.99316 0.98201 1.20921 0.95419 0.99117 0.97952 1.21031 1.00248 0.97844 0.94180 1.21050 0.91708 0.98068 0.99236 1.18071 0.94169 0.96622 0.92978 1.22257 0.98518 0.86968 0.98463 1.22136 0.98045 0.97391 0.89858 0.92592 0.92905 0.94017 0.96314 0.96225 0.93360 0.94718 0.88345 0.93016 0.90808 0.83017 0.82229 0.85119 0.85824 0.85734 0.84208 0.93258 0.90948 0.90592 0.94503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.06 8.49 37.15 0.32 -2.74 16 2 C 0.09 1.72 2.30 -67.71 -0.16 1.56 16 3 H 0.07 1.41 8.11 -51.92 -0.42 0.99 16 4 C 0.03 0.69 4.27 -27.88 -0.12 0.58 16 5 C -0.49 -13.45 8.84 -34.44 -0.30 -13.76 16 6 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 9 Si 0.89 21.95 29.54 -169.99 -5.02 16.92 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 N -0.51 -9.27 4.41 -226.49 -1.00 -10.26 16 14 C 0.06 1.01 4.82 -3.77 -0.02 0.99 16 15 C 0.06 0.97 5.36 -3.77 -0.02 0.95 16 16 N -0.50 -6.89 3.96 -170.59 -0.68 -7.57 16 17 C 0.07 0.98 4.74 -83.38 -0.40 0.59 16 18 C 0.04 0.62 9.81 -17.36 -0.17 0.45 16 19 N -0.48 -6.46 10.29 -12.75 -0.13 -6.59 16 20 C 0.13 1.41 11.03 -16.99 -0.19 1.22 16 21 C -0.11 -1.16 5.74 -106.87 -0.61 -1.77 16 22 C -0.10 -0.81 9.81 -39.50 -0.39 -1.20 16 23 C -0.12 -0.91 9.94 -39.91 -0.40 -1.31 16 24 C -0.11 -1.01 9.95 -39.88 -0.40 -1.40 16 25 C -0.08 -0.91 9.59 -39.60 -0.38 -1.29 16 26 C -0.01 -0.16 5.76 -106.67 -0.61 -0.77 16 27 C 0.06 0.88 5.32 -3.77 -0.02 0.86 16 28 C 0.05 0.81 5.25 -3.77 -0.02 0.79 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.88 6.45 -51.92 -0.34 0.55 16 31 H 0.04 0.62 6.59 -51.93 -0.34 0.28 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.02 0.51 6.11 -51.93 -0.32 0.19 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.03 0.57 6.46 -51.93 -0.34 0.24 16 36 H 0.10 1.97 6.07 -51.93 -0.32 1.65 16 37 H 0.05 0.86 7.46 -51.93 -0.39 0.47 16 38 H 0.07 1.07 8.13 -51.93 -0.42 0.64 16 39 H 0.15 2.13 7.04 -52.49 -0.37 1.76 16 40 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 42 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 44 H 0.14 1.57 7.65 -52.48 -0.40 1.17 16 45 H 0.05 0.72 7.26 -51.93 -0.38 0.34 16 46 H 0.07 0.90 8.13 -51.92 -0.42 0.48 16 47 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 48 H 0.04 0.54 6.60 -51.93 -0.34 0.19 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -30.68 374.05 -11.72 -42.40 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -7.29 Total: 0.52 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -3.98 Total: -14.90 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -1.07 Total: -50.58 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.68 -11.72 -42.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298359013.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.877 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds