Wall clock time and date at job start Sat Apr 11 2020 01:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.50701 * 109.47212 * 174.99684 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46890 * 120.00210 * 9 7 5 12 12 H 1.48501 * 109.47062 * 240.00257 * 9 7 5 13 13 N 1.46904 * 109.47162 * 119.99452 * 2 1 3 14 14 C 1.46960 * 110.99744 * 58.80696 * 13 2 1 15 15 C 1.53050 * 109.36512 * 176.80976 * 14 13 2 16 16 N 1.46960 * 109.36484 * 58.39776 * 15 14 13 17 17 C 1.39374 * 110.99837 * 176.81065 * 16 15 14 18 18 C 1.37992 * 120.78777 * 63.80036 * 17 16 15 19 19 N 1.32483 * 121.57797 * 180.02562 * 18 17 16 20 20 C 1.31234 * 122.87438 * 0.02562 * 19 18 17 21 21 C 1.40410 * 120.21214 * 0.02562 * 20 19 18 22 22 C 1.40418 * 121.98053 * 179.97438 * 21 20 19 23 23 C 1.36171 * 119.52212 * 179.97438 * 22 21 20 24 24 C 1.39354 * 121.07361 * 359.97438 * 23 22 21 25 25 C 1.36266 * 120.99557 * 0.04658 * 24 23 22 26 26 C 1.40078 * 119.49197 * 359.65706 * 25 24 23 27 27 C 1.46951 * 110.87860 * 300.68066 * 16 15 14 28 28 C 1.46947 * 111.00539 * 295.00479 * 13 2 1 29 29 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 30 30 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 32 32 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 33 33 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 34 34 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.48599 * 296.77974 * 14 13 2 36 36 H 1.09000 * 109.49267 * 56.83572 * 14 13 2 37 37 H 1.08995 * 109.48592 * 298.42880 * 15 14 13 38 38 H 1.09001 * 109.50299 * 178.37643 * 15 14 13 39 39 H 1.08000 * 119.20938 * 0.02620 * 18 17 16 40 40 H 1.07996 * 119.89255 * 180.02562 * 20 19 18 41 41 H 1.07998 * 120.23413 * 0.02562 * 22 21 20 42 42 H 1.07997 * 119.45966 * 180.02562 * 23 22 21 43 43 H 1.08006 * 119.49940 * 180.02562 * 24 23 22 44 44 H 1.08003 * 120.25635 * 179.97438 * 25 24 23 45 45 H 1.08998 * 109.49134 * 299.35228 * 27 16 15 46 46 H 1.09007 * 109.50341 * 179.29911 * 27 16 15 47 47 H 1.09006 * 109.48668 * 303.15646 * 28 13 2 48 48 H 1.08998 * 109.48895 * 63.21570 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2994 9 14 6.0922 -1.0621 -2.4360 10 1 6.5838 -0.2925 -1.2650 11 1 6.6856 -2.4233 -2.4178 12 1 6.4871 -0.3665 -3.6872 13 7 2.0196 -0.6924 1.1995 14 6 1.5252 -2.0755 1.2479 15 6 2.1202 -2.7848 2.4667 16 7 1.7490 -2.0528 3.6858 17 6 2.2136 -2.7098 4.8238 18 6 3.5665 -2.8667 5.0459 19 7 4.0253 -3.4889 6.1218 20 6 3.2382 -3.9950 7.0420 21 6 1.8437 -3.8918 6.9136 22 6 0.9673 -4.4200 7.8752 23 6 -0.3770 -4.2910 7.7006 24 6 -0.8982 -3.6423 6.5828 25 6 -0.0775 -3.1180 5.6296 26 6 1.3110 -3.2267 5.7794 27 6 2.2435 -0.6698 3.6373 28 6 1.6485 0.0394 2.4186 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6054 -0.2617 -2.1370 33 1 1.7517 -1.7715 -1.2055 34 1 4.0609 -2.2444 -4.0348 35 1 0.4379 -2.0705 1.3249 36 1 1.8233 -2.6003 0.3403 37 1 3.2060 -2.8138 2.3763 38 1 1.7324 -3.8020 2.5210 39 1 4.2681 -2.4729 4.3255 40 1 3.6643 -4.4924 7.9006 41 1 1.3567 -4.9243 8.7472 42 1 -1.0501 -4.6973 8.4410 43 1 -1.9687 -3.5540 6.4701 44 1 -0.4943 -2.6180 4.7678 45 1 3.3307 -0.6748 3.5603 46 1 1.9456 -0.1448 4.5450 47 1 2.0366 1.0566 2.3644 48 1 0.5627 0.0685 2.5089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298359013.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:33:28 Heat of formation + Delta-G solvation = 54.472162 kcal Electronic energy + Delta-G solvation = -27764.489601 eV Core-core repulsion = 24204.454633 eV Total energy + Delta-G solvation = -3560.034968 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.08291 -40.45172 -38.42267 -37.57484 -34.99045 -33.49542 -32.21554 -32.01895 -31.70615 -29.85551 -29.14295 -26.93488 -25.22735 -24.74009 -24.63144 -24.33081 -22.60132 -21.57648 -20.14682 -18.81096 -18.46884 -18.35544 -17.95176 -16.97565 -16.59657 -16.36843 -16.10157 -15.77199 -15.66744 -15.27255 -15.01166 -14.96870 -14.75801 -14.56483 -14.39506 -13.90694 -13.73923 -13.63292 -13.30598 -13.09915 -13.00271 -12.90650 -12.73953 -12.63061 -12.41850 -12.34557 -12.14029 -11.94931 -11.91050 -11.53055 -11.09267 -10.98524 -10.90287 -10.85982 -10.48476 -10.01954 -9.48293 -8.93145 -8.92034 -8.11147 -6.15226 -0.63198 -0.07424 0.95104 1.38586 1.40516 1.52696 2.10124 2.45757 2.59600 3.06945 3.08774 3.25849 3.48361 3.69455 3.80051 3.85577 3.97657 3.99779 4.03362 4.21790 4.30228 4.31959 4.32845 4.36256 4.43705 4.45334 4.53924 4.59176 4.61770 4.71249 4.76541 4.84555 4.91554 4.95146 5.02017 5.08301 5.12690 5.18569 5.21816 5.30329 5.46300 5.50952 5.52306 5.62400 5.70950 5.74792 5.90033 5.97929 6.18562 6.32325 6.40362 6.52095 6.95357 6.99017 7.50645 9.00907 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016872 B = 0.003206 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.199162 B = 8731.878928 C = 9718.822159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.096 3.904 3 H 0.066 0.934 4 C 0.035 3.965 5 C -0.496 4.496 6 H 0.056 0.944 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.952 3.048 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.281 1.281 13 N -0.532 5.532 14 C 0.069 3.931 15 C 0.075 3.925 16 N -0.490 5.490 17 C 0.056 3.944 18 C 0.031 3.969 19 N -0.507 5.507 20 C 0.138 3.862 21 C -0.120 4.120 22 C -0.090 4.090 23 C -0.115 4.115 24 C -0.101 4.101 25 C -0.108 4.108 26 C -0.028 4.028 27 C 0.070 3.930 28 C 0.059 3.941 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.067 0.933 32 H -0.008 1.008 33 H 0.000 1.000 34 H 0.258 0.742 35 H 0.045 0.955 36 H 0.062 0.938 37 H 0.031 0.969 38 H 0.079 0.921 39 H 0.136 0.864 40 H 0.196 0.804 41 H 0.166 0.834 42 H 0.158 0.842 43 H 0.148 0.852 44 H 0.131 0.869 45 H 0.035 0.965 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.994 -3.850 25.665 27.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.012 4.012 3 H 0.085 0.915 4 C -0.003 4.003 5 C -0.535 4.535 6 H 0.074 0.926 7 C -0.199 4.199 8 N -0.581 5.581 9 Si 0.778 3.222 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.207 1.207 13 N -0.256 5.256 14 C -0.060 4.060 15 C -0.052 4.052 16 N -0.212 5.212 17 C -0.040 4.040 18 C -0.114 4.114 19 N -0.216 5.216 20 C -0.033 4.033 21 C -0.122 4.122 22 C -0.110 4.110 23 C -0.133 4.133 24 C -0.120 4.120 25 C -0.127 4.127 26 C -0.033 4.033 27 C -0.057 4.057 28 C -0.069 4.069 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.011 0.989 33 H 0.018 0.982 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.049 0.951 38 H 0.098 0.902 39 H 0.153 0.847 40 H 0.213 0.787 41 H 0.183 0.817 42 H 0.176 0.824 43 H 0.166 0.834 44 H 0.149 0.851 45 H 0.053 0.947 46 H 0.109 0.891 47 H 0.102 0.898 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.022 -3.903 25.442 27.275 hybrid contribution 0.378 0.112 -1.220 1.282 sum -8.644 -3.790 24.222 25.996 Atomic orbital electron populations 1.22360 0.97119 1.01570 1.02021 1.21596 0.92098 0.97284 0.90192 0.91550 1.19086 0.95090 0.94518 0.91556 1.21503 0.93310 1.32172 1.06501 0.92588 1.25796 1.02508 0.95761 0.95840 1.70088 1.36860 1.38067 1.13059 0.85594 0.81136 0.77568 0.77896 1.19148 1.21115 1.20727 1.62173 1.59799 1.01836 1.01789 1.21978 0.97246 0.90003 0.96739 1.22119 0.98210 0.96934 0.87915 1.59601 1.59219 1.02418 0.99957 1.19701 0.92015 0.98916 0.93380 1.22939 0.94311 0.98370 0.95786 1.67295 1.41621 1.09930 1.02713 1.23745 0.88773 0.93845 0.96889 1.19308 0.95870 1.00873 0.96191 1.21340 0.93187 0.98169 0.98257 1.21355 0.95863 0.98065 0.98006 1.21403 1.01301 0.95885 0.93453 1.21049 0.91423 0.99953 1.00226 1.18270 0.94706 0.97024 0.93341 1.22218 0.97605 0.87230 0.98633 1.22167 0.98788 0.97397 0.88505 0.92471 0.93194 0.91403 0.98932 0.98227 0.93307 0.93719 0.91971 0.95081 0.90227 0.84676 0.78706 0.81667 0.82402 0.83403 0.85110 0.94692 0.89128 0.89837 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.64 8.49 71.98 0.61 -5.03 16 2 C 0.10 3.85 2.30 44.91 0.10 3.96 16 3 H 0.07 2.69 8.11 -2.38 -0.02 2.67 16 4 C 0.03 1.78 4.27 29.85 0.13 1.91 16 5 C -0.50 -28.15 8.84 25.60 0.23 -27.92 16 6 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 7 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 8 N -0.94 -57.67 13.29 21.45 0.28 -57.39 16 9 Si 0.95 46.06 29.54 68.60 2.03 48.08 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 13 N -0.53 -19.65 4.41 -870.48 -3.84 -23.49 16 14 C 0.07 2.46 4.82 86.31 0.42 2.87 16 15 C 0.07 2.39 5.36 86.31 0.46 2.85 16 16 N -0.49 -13.66 3.96 -693.61 -2.75 -16.41 16 17 C 0.06 1.53 4.74 38.62 0.18 1.71 16 18 C 0.03 0.90 9.81 84.54 0.83 1.73 16 19 N -0.51 -13.74 10.29 -194.24 -2.00 -15.74 16 20 C 0.14 2.77 11.03 85.31 0.94 3.71 16 21 C -0.12 -2.35 5.74 -21.32 -0.12 -2.48 16 22 C -0.09 -1.12 9.81 22.32 0.22 -0.90 16 23 C -0.12 -1.29 9.94 22.06 0.22 -1.07 16 24 C -0.10 -1.45 9.95 22.08 0.22 -1.24 16 25 C -0.11 -2.22 9.59 22.26 0.21 -2.00 16 26 C -0.03 -0.66 5.76 -21.19 -0.12 -0.78 16 27 C 0.07 1.91 5.32 86.31 0.46 2.37 16 28 C 0.06 1.73 5.25 86.31 0.45 2.19 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.05 1.66 6.45 -2.38 -0.02 1.64 16 31 H 0.07 1.88 6.59 -2.39 -0.02 1.86 16 32 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 33 H 0.00 -0.03 6.11 -2.39 -0.01 -0.04 16 34 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 35 H 0.04 1.50 6.46 -2.39 -0.02 1.48 16 36 H 0.06 2.67 6.07 -2.39 -0.01 2.65 16 37 H 0.03 1.11 7.46 -2.39 -0.02 1.09 16 38 H 0.08 2.41 8.13 -2.39 -0.02 2.39 16 39 H 0.14 4.16 7.04 -2.91 -0.02 4.14 16 40 H 0.20 2.27 8.06 -2.91 -0.02 2.24 16 41 H 0.17 0.89 8.06 -2.91 -0.02 0.86 16 42 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 43 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 44 H 0.13 2.83 7.65 -2.91 -0.02 2.81 16 45 H 0.03 1.06 7.26 -2.39 -0.02 1.04 16 46 H 0.09 2.17 8.13 -2.38 -0.02 2.15 16 47 H 0.08 2.31 8.12 -2.38 -0.02 2.29 16 48 H 0.05 1.32 6.60 -2.39 -0.02 1.30 16 Total: -1.00 -69.22 374.05 0.57 -68.64 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.95 Total: 14.14 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 5.90 Total: -17.83 kcal Atomic # 7 Polarization: -104.73 SS G_CDS: -8.30 Total: -113.03 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -69.22 0.57 -68.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298359013.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.115 kcal (2) G-P(sol) polarization free energy of solvation -69.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds