Wall clock time and date at job start Sat Apr 11 2020 01:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47115 * 2 1 4 4 C 1.53003 * 109.47111 * 240.00572 * 2 1 3 5 5 C 1.50703 * 109.47179 * 59.99645 * 4 2 1 6 6 H 1.08004 * 120.00093 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99883 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00390 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99744 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47257 * 60.00275 * 9 7 5 11 11 H 1.48500 * 109.46995 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47190 * 299.99875 * 9 7 5 13 13 C 1.52990 * 109.47515 * 120.00576 * 2 1 3 14 14 N 1.46502 * 109.46969 * 300.00039 * 13 2 1 15 15 C 1.31476 * 120.00402 * 114.39103 * 14 13 2 16 16 C 1.41985 * 120.91412 * 353.72003 * 15 14 13 17 17 C 1.35653 * 118.60018 * 180.02562 * 16 15 14 18 18 N 1.33773 * 120.41052 * 0.02562 * 17 16 15 19 19 C 1.30407 * 122.03356 * 359.97438 * 18 17 16 20 20 C 1.50698 * 119.29560 * 179.97438 * 19 18 17 21 21 C 1.50699 * 109.46727 * 305.00305 * 20 19 18 22 22 C 1.38229 * 120.00302 * 89.99901 * 21 20 19 23 23 C 1.38245 * 120.00083 * 180.25232 * 22 21 20 24 24 C 1.38229 * 119.99627 * 359.50994 * 23 22 21 25 25 C 1.38231 * 120.00217 * 0.47099 * 24 23 22 26 26 C 1.38231 * 120.00201 * 359.75990 * 25 24 23 27 27 N 1.35661 * 121.41204 * 0.26051 * 19 18 17 28 28 H 0.97004 * 120.30667 * 179.72209 * 27 19 18 29 29 H 1.09001 * 109.46954 * 299.99339 * 1 2 3 30 30 H 1.09000 * 109.46966 * 59.99370 * 1 2 3 31 31 H 1.08996 * 109.47034 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47071 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47350 * 300.00544 * 3 2 1 34 34 H 1.09001 * 109.46670 * 60.00487 * 3 2 1 35 35 H 1.09000 * 109.47383 * 179.97438 * 4 2 1 36 36 H 1.08996 * 109.47139 * 299.99896 * 4 2 1 37 37 H 0.97004 * 120.00546 * 179.97438 * 8 7 5 38 38 H 1.08998 * 109.48081 * 179.97438 * 13 2 1 39 39 H 1.09008 * 109.47385 * 59.99849 * 13 2 1 40 40 H 1.08007 * 120.70587 * 0.04134 * 16 15 14 41 41 H 1.08004 * 119.79187 * 180.02562 * 17 16 15 42 42 H 1.08993 * 109.47086 * 185.00058 * 20 19 18 43 43 H 1.08995 * 109.46999 * 64.99533 * 20 19 18 44 44 H 1.08005 * 120.00178 * 359.97438 * 22 21 20 45 45 H 1.08004 * 119.99992 * 179.72403 * 23 22 21 46 46 H 1.08004 * 119.99916 * 180.25651 * 24 23 22 47 47 H 1.08003 * 119.99758 * 179.78443 * 25 24 23 48 48 H 1.07997 * 120.00209 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5376 -0.0107 -2.4798 6 1 0.9170 0.8677 -2.3806 7 6 1.8711 -0.4813 -3.7320 8 7 2.6281 -1.5499 -3.8528 9 14 1.2489 0.3998 -5.2572 10 1 1.7439 1.7999 -5.2566 11 1 1.7448 -0.2994 -6.4698 12 1 -0.2361 0.3998 -5.2577 13 6 2.0401 -0.7213 1.2491 14 7 1.5517 -0.0308 2.4453 15 6 0.7076 -0.6331 3.2536 16 6 0.1543 -1.8975 2.9201 17 6 -0.7125 -2.4763 3.7883 18 7 -1.0354 -1.8634 4.9326 19 6 -0.5396 -0.7023 5.2592 20 6 -0.9466 -0.0673 6.5638 21 6 -2.4488 0.0346 6.6257 22 6 -3.1902 -1.0004 7.1643 23 6 -4.5686 -0.9091 7.2163 24 6 -5.2049 0.2214 6.7390 25 6 -4.4635 1.2565 6.2008 26 6 -3.0855 1.1633 6.1444 27 7 0.3304 -0.0513 4.4470 28 1 0.6863 0.8137 4.7040 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 3.1300 -0.7208 -1.2496 36 1 1.6767 -1.7488 -1.2494 37 1 2.8624 -1.8813 -4.7339 38 1 3.1300 -0.7218 1.2489 39 1 1.6767 -1.7491 1.2490 40 1 0.4181 -2.3882 1.9948 41 1 -1.1446 -3.4381 3.5541 42 1 -0.5116 0.9296 6.6339 43 1 -0.5895 -0.6787 7.3925 44 1 -2.6928 -1.8822 7.5404 45 1 -5.1482 -1.7197 7.6330 46 1 -6.2815 0.2945 6.7834 47 1 -4.9610 2.1383 5.8247 48 1 -2.5063 1.9718 5.7235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340945393.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:34:34 Heat of formation + Delta-G solvation = 73.576388 kcal Electronic energy + Delta-G solvation = -26622.667920 eV Core-core repulsion = 23063.461374 eV Total energy + Delta-G solvation = -3559.206546 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.04111 -39.40190 -37.38690 -34.99551 -34.51962 -32.93661 -32.02534 -31.15034 -29.90333 -27.66094 -26.95060 -26.28395 -25.89974 -23.90318 -23.19767 -22.82449 -22.01268 -20.68044 -18.48093 -17.88123 -17.36724 -17.06933 -16.24718 -15.92823 -15.77357 -15.36046 -15.02107 -14.68644 -14.55741 -14.04388 -13.69897 -13.63994 -13.41237 -13.21634 -12.99905 -12.75036 -12.58492 -12.38810 -11.97166 -11.86137 -11.57902 -11.36771 -11.27278 -10.97351 -10.84990 -10.77983 -10.66135 -10.45857 -10.15490 -10.02961 -9.88926 -9.62945 -9.16102 -9.16021 -9.04925 -8.85295 -8.66285 -8.28915 -7.30298 -5.93442 -3.93519 0.75789 1.05787 1.16877 2.05233 2.63762 3.36366 3.40624 3.43227 3.47976 3.68674 3.89492 4.38669 4.45531 4.50694 4.63456 4.74081 4.85605 4.89728 4.95799 5.12931 5.22569 5.26947 5.34927 5.37648 5.42148 5.69512 5.77182 5.78405 5.90534 5.93886 6.07224 6.15211 6.18653 6.26163 6.28535 6.30332 6.50961 6.57665 6.70300 6.72386 6.74437 6.85911 6.88121 7.02845 7.24884 7.29779 7.37642 7.72645 7.88012 7.94933 8.06332 8.29990 8.52328 9.11205 9.68877 11.18083 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018971 B = 0.002391 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.558310 B =11709.749658 C =12220.325380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.054 4.054 3 C -0.115 4.115 4 C 0.034 3.966 5 C -0.506 4.506 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.074 3.926 14 N -0.583 5.583 15 C 0.377 3.623 16 C -0.253 4.253 17 C 0.119 3.881 18 N -0.549 5.549 19 C 0.404 3.596 20 C -0.028 4.028 21 C -0.079 4.079 22 C -0.085 4.085 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.112 4.112 27 N -0.615 5.615 28 H 0.416 0.584 29 H 0.028 0.972 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.038 0.962 35 H 0.015 0.985 36 H 0.013 0.987 37 H 0.259 0.741 38 H 0.073 0.927 39 H 0.040 0.960 40 H 0.150 0.850 41 H 0.155 0.845 42 H 0.096 0.904 43 H 0.113 0.887 44 H 0.127 0.873 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.555 2.144 26.622 29.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.054 4.054 3 C -0.172 4.172 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.056 4.056 14 N -0.307 5.307 15 C 0.106 3.894 16 C -0.280 4.280 17 C -0.017 4.017 18 N -0.273 5.273 19 C 0.137 3.863 20 C -0.067 4.067 21 C -0.080 4.080 22 C -0.104 4.104 23 C -0.141 4.141 24 C -0.136 4.136 25 C -0.140 4.140 26 C -0.130 4.130 27 N -0.240 5.240 28 H 0.254 0.746 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.034 0.966 36 H 0.031 0.969 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.168 0.832 41 H 0.172 0.828 42 H 0.115 0.885 43 H 0.131 0.869 44 H 0.145 0.855 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.469 2.216 26.576 29.029 hybrid contribution 0.087 0.270 -1.890 1.911 sum -11.381 2.486 24.686 27.296 Atomic orbital electron populations 1.21679 0.95994 1.00085 1.00014 1.20658 0.94770 0.96026 0.93987 1.21590 0.99694 0.95985 0.99965 1.19137 0.96126 0.94978 0.90122 1.21190 1.30775 1.11872 0.90608 0.92446 1.25008 0.95415 0.95141 0.98995 1.69953 1.37211 1.23229 1.23364 0.86728 0.79147 0.79838 0.82706 1.20333 1.21408 1.20370 1.22204 0.99198 0.95468 0.88693 1.72272 1.17123 1.33372 1.07954 1.18919 0.94331 0.89401 0.86774 1.22594 1.04126 0.97241 1.04001 1.22117 0.92913 0.98454 0.88234 1.67936 1.29219 1.08936 1.21164 1.22782 0.84107 0.88380 0.91048 1.19602 0.93623 1.01539 0.91935 1.19324 0.93336 0.95052 1.00306 1.21027 0.93764 0.97604 0.97959 1.21162 0.94678 0.97975 1.00277 1.21188 0.99886 0.94006 0.98523 1.21108 0.93940 0.99112 0.99886 1.21064 0.94930 0.97662 0.99339 1.42697 1.41637 1.22497 1.17159 0.74643 0.95309 0.92098 0.94353 0.94129 0.92688 0.94279 0.96625 0.96881 0.93117 0.90838 0.94226 0.83227 0.82817 0.88538 0.86905 0.85530 0.86024 0.86221 0.86086 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.51 8.06 37.16 0.30 -2.21 16 2 C -0.05 -1.16 0.60 -154.51 -0.09 -1.25 16 3 C -0.12 -2.42 8.06 37.16 0.30 -2.12 16 4 C 0.03 0.89 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -14.26 7.65 -34.44 -0.26 -14.52 16 6 H 0.06 1.59 5.68 -52.48 -0.30 1.29 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 9 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.07 1.43 5.10 -4.05 -0.02 1.41 16 14 N -0.58 -10.09 9.18 -60.07 -0.55 -10.64 16 15 C 0.38 5.62 7.53 -155.65 -1.17 4.44 16 16 C -0.25 -3.64 9.24 -39.07 -0.36 -4.01 16 17 C 0.12 1.48 11.16 -17.63 -0.20 1.28 16 18 N -0.55 -6.39 9.92 -10.54 -0.10 -6.49 16 19 C 0.40 3.99 7.14 -154.93 -1.11 2.88 16 20 C -0.03 -0.17 5.84 -29.04 -0.17 -0.34 16 21 C -0.08 -0.62 4.91 -104.62 -0.51 -1.13 16 22 C -0.09 -0.67 9.64 -39.58 -0.38 -1.05 16 23 C -0.12 -0.93 10.05 -39.58 -0.40 -1.32 16 24 C -0.12 -0.89 10.05 -39.59 -0.40 -1.29 16 25 C -0.12 -0.97 10.05 -39.59 -0.40 -1.36 16 26 C -0.11 -0.90 9.70 -39.58 -0.38 -1.28 16 27 N -0.62 -6.81 5.42 -9.30 -0.05 -6.86 16 28 H 0.42 3.65 8.65 -40.82 -0.35 3.30 16 29 H 0.03 0.56 7.44 -51.93 -0.39 0.17 16 30 H 0.06 1.35 6.62 -51.93 -0.34 1.00 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 1.21 6.62 -51.93 -0.34 0.87 16 34 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.04 0.74 5.30 -51.92 -0.28 0.47 16 40 H 0.15 2.28 5.90 -52.48 -0.31 1.97 16 41 H 0.15 1.57 8.06 -52.48 -0.42 1.15 16 42 H 0.10 0.36 7.84 -51.93 -0.41 -0.05 16 43 H 0.11 0.52 8.08 -51.93 -0.42 0.10 16 44 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 45 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 46 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 47 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 48 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 390.04 15.07 5.88 5.88 Total: -1.00 -33.60 390.04 -11.90 -45.50 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -7.32 Total: 1.73 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -5.47 Total: -19.61 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.03 Total: -50.52 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.60 -11.90 -45.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340945393.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.074 kcal (2) G-P(sol) polarization free energy of solvation -33.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds