Wall clock time and date at job start Sat Apr 11 2020 01:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47115 * 2 1 4 4 C 1.53003 * 109.47111 * 240.00572 * 2 1 3 5 5 C 1.50703 * 109.47179 * 59.99645 * 4 2 1 6 6 H 1.08004 * 120.00093 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99883 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00390 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99744 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47257 * 60.00275 * 9 7 5 11 11 H 1.48500 * 109.46995 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47190 * 299.99875 * 9 7 5 13 13 C 1.52990 * 109.47515 * 120.00576 * 2 1 3 14 14 N 1.46502 * 109.46969 * 300.00039 * 13 2 1 15 15 C 1.31476 * 120.00402 * 114.39103 * 14 13 2 16 16 C 1.41985 * 120.91412 * 353.72003 * 15 14 13 17 17 C 1.35653 * 118.60018 * 180.02562 * 16 15 14 18 18 N 1.33773 * 120.41052 * 0.02562 * 17 16 15 19 19 C 1.30407 * 122.03356 * 359.97438 * 18 17 16 20 20 C 1.50698 * 119.29560 * 179.97438 * 19 18 17 21 21 C 1.50699 * 109.46727 * 305.00305 * 20 19 18 22 22 C 1.38229 * 120.00302 * 89.99901 * 21 20 19 23 23 C 1.38245 * 120.00083 * 180.25232 * 22 21 20 24 24 C 1.38229 * 119.99627 * 359.50994 * 23 22 21 25 25 C 1.38231 * 120.00217 * 0.47099 * 24 23 22 26 26 C 1.38231 * 120.00201 * 359.75990 * 25 24 23 27 27 N 1.35661 * 121.41204 * 0.26051 * 19 18 17 28 28 H 0.97004 * 120.30667 * 179.72209 * 27 19 18 29 29 H 1.09001 * 109.46954 * 299.99339 * 1 2 3 30 30 H 1.09000 * 109.46966 * 59.99370 * 1 2 3 31 31 H 1.08996 * 109.47034 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47071 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47350 * 300.00544 * 3 2 1 34 34 H 1.09001 * 109.46670 * 60.00487 * 3 2 1 35 35 H 1.09000 * 109.47383 * 179.97438 * 4 2 1 36 36 H 1.08996 * 109.47139 * 299.99896 * 4 2 1 37 37 H 0.97004 * 120.00546 * 179.97438 * 8 7 5 38 38 H 1.08998 * 109.48081 * 179.97438 * 13 2 1 39 39 H 1.09008 * 109.47385 * 59.99849 * 13 2 1 40 40 H 1.08007 * 120.70587 * 0.04134 * 16 15 14 41 41 H 1.08004 * 119.79187 * 180.02562 * 17 16 15 42 42 H 1.08993 * 109.47086 * 185.00058 * 20 19 18 43 43 H 1.08995 * 109.46999 * 64.99533 * 20 19 18 44 44 H 1.08005 * 120.00178 * 359.97438 * 22 21 20 45 45 H 1.08004 * 119.99992 * 179.72403 * 23 22 21 46 46 H 1.08004 * 119.99916 * 180.25651 * 24 23 22 47 47 H 1.08003 * 119.99758 * 179.78443 * 25 24 23 48 48 H 1.07997 * 120.00209 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5376 -0.0107 -2.4798 6 1 0.9170 0.8677 -2.3806 7 6 1.8711 -0.4813 -3.7320 8 7 2.6281 -1.5499 -3.8528 9 14 1.2489 0.3998 -5.2572 10 1 1.7439 1.7999 -5.2566 11 1 1.7448 -0.2994 -6.4698 12 1 -0.2361 0.3998 -5.2577 13 6 2.0401 -0.7213 1.2491 14 7 1.5517 -0.0308 2.4453 15 6 0.7076 -0.6331 3.2536 16 6 0.1543 -1.8975 2.9201 17 6 -0.7125 -2.4763 3.7883 18 7 -1.0354 -1.8634 4.9326 19 6 -0.5396 -0.7023 5.2592 20 6 -0.9466 -0.0673 6.5638 21 6 -2.4488 0.0346 6.6257 22 6 -3.1902 -1.0004 7.1643 23 6 -4.5686 -0.9091 7.2163 24 6 -5.2049 0.2214 6.7390 25 6 -4.4635 1.2565 6.2008 26 6 -3.0855 1.1633 6.1444 27 7 0.3304 -0.0513 4.4470 28 1 0.6863 0.8137 4.7040 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 3.1300 -0.7208 -1.2496 36 1 1.6767 -1.7488 -1.2494 37 1 2.8624 -1.8813 -4.7339 38 1 3.1300 -0.7218 1.2489 39 1 1.6767 -1.7491 1.2490 40 1 0.4181 -2.3882 1.9948 41 1 -1.1446 -3.4381 3.5541 42 1 -0.5116 0.9296 6.6339 43 1 -0.5895 -0.6787 7.3925 44 1 -2.6928 -1.8822 7.5404 45 1 -5.1482 -1.7197 7.6330 46 1 -6.2815 0.2945 6.7834 47 1 -4.9610 2.1383 5.8247 48 1 -2.5063 1.9718 5.7235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340945393.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:34:33 Heat of formation + Delta-G solvation = 55.736437 kcal Electronic energy + Delta-G solvation = -26623.441518 eV Core-core repulsion = 23063.461374 eV Total energy + Delta-G solvation = -3559.980145 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -42.00938 -39.99392 -38.96166 -36.26054 -35.42710 -34.52978 -33.40187 -31.68527 -30.96393 -29.00729 -28.38172 -27.97167 -27.36696 -25.12133 -24.78044 -23.38776 -22.96900 -21.59611 -19.54806 -19.45028 -18.40616 -18.35481 -17.67392 -17.09047 -16.60179 -16.43185 -15.96190 -15.83675 -15.68136 -15.33055 -15.18554 -14.99217 -14.36053 -14.19409 -13.98351 -13.94369 -13.81752 -13.64916 -13.23661 -13.08752 -12.87154 -12.76854 -12.69072 -12.56678 -12.33257 -12.20704 -12.02236 -11.98728 -11.79373 -11.52033 -11.28290 -11.04618 -10.84398 -10.77902 -10.52321 -10.03530 -9.71538 -9.60956 -8.48392 -8.14981 -6.23308 -0.17843 0.46528 0.61076 0.96836 1.38483 1.41202 1.48619 1.67526 2.41991 2.65705 2.87141 3.17382 3.18693 3.61795 3.83202 3.92197 3.99050 4.09245 4.17101 4.24090 4.26188 4.27156 4.36890 4.38822 4.47174 4.67532 4.68682 4.76974 4.82725 4.86771 4.88677 4.91629 5.01195 5.09317 5.11875 5.18334 5.22267 5.26536 5.41419 5.45824 5.48737 5.58029 5.64390 5.69117 5.72272 5.74419 5.82378 5.88264 6.07633 6.20504 6.32128 6.89724 6.98764 7.11954 7.43576 8.96411 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018971 B = 0.002391 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.558310 B =11709.749658 C =12220.325380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.050 4.050 3 C -0.104 4.104 4 C 0.042 3.958 5 C -0.517 4.517 6 H 0.062 0.938 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.957 3.043 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.087 3.913 14 N -0.615 5.615 15 C 0.388 3.612 16 C -0.297 4.297 17 C 0.145 3.855 18 N -0.562 5.562 19 C 0.417 3.583 20 C -0.025 4.025 21 C -0.088 4.088 22 C -0.095 4.095 23 C -0.134 4.134 24 C -0.128 4.128 25 C -0.138 4.138 26 C -0.125 4.125 27 N -0.603 5.603 28 H 0.430 0.570 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.040 0.960 34 H 0.056 0.944 35 H -0.014 1.014 36 H -0.014 1.014 37 H 0.261 0.739 38 H 0.058 0.942 39 H 0.036 0.964 40 H 0.133 0.867 41 H 0.174 0.826 42 H 0.127 0.873 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.133 0.867 47 H 0.131 0.869 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.190 3.254 28.640 31.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.051 4.051 3 C -0.162 4.162 4 C 0.004 3.996 5 C -0.555 4.555 6 H 0.080 0.920 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.782 3.218 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.193 1.193 13 C -0.043 4.043 14 N -0.342 5.342 15 C 0.118 3.882 16 C -0.324 4.324 17 C 0.008 3.992 18 N -0.285 5.285 19 C 0.151 3.849 20 C -0.063 4.063 21 C -0.089 4.089 22 C -0.113 4.113 23 C -0.152 4.152 24 C -0.146 4.146 25 C -0.156 4.156 26 C -0.143 4.143 27 N -0.227 5.227 28 H 0.270 0.730 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.005 0.995 36 H 0.004 0.996 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.151 0.849 41 H 0.192 0.808 42 H 0.145 0.855 43 H 0.155 0.845 44 H 0.154 0.846 45 H 0.154 0.846 46 H 0.151 0.849 47 H 0.149 0.851 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.123 3.365 28.655 31.696 hybrid contribution 0.457 -0.148 -2.280 2.330 sum -12.665 3.217 26.375 29.435 Atomic orbital electron populations 1.21497 0.95168 0.99773 0.99783 1.20514 0.95301 0.96098 0.93182 1.21470 0.99215 0.95468 1.00019 1.18993 0.94153 0.94027 0.92385 1.21530 1.30517 1.11950 0.91484 0.91987 1.25918 0.95623 0.95915 1.02508 1.70097 1.38557 1.24840 1.24178 0.85621 0.78906 0.78796 0.78470 1.19357 1.21017 1.19343 1.21834 0.98292 0.95194 0.88996 1.72256 1.20166 1.33521 1.08258 1.19113 0.92666 0.89388 0.87015 1.22454 1.06986 0.98175 1.04772 1.22478 0.90644 0.98649 0.87477 1.68080 1.29867 1.09840 1.20756 1.23633 0.82142 0.87607 0.91497 1.19841 0.92890 1.03415 0.90178 1.19465 0.94004 0.94988 1.00425 1.21255 0.94049 0.98007 0.98010 1.21437 0.95027 0.98463 1.00264 1.21459 1.00822 0.94025 0.98332 1.21373 0.94335 0.99730 1.00142 1.21316 0.95224 0.98242 0.99474 1.42778 1.41112 1.22929 1.15833 0.73007 0.93833 0.93657 0.94738 0.94758 0.94082 0.92471 0.99541 0.99551 0.93041 0.92364 0.94566 0.84897 0.80842 0.85498 0.84545 0.84646 0.84633 0.84872 0.85107 0.85088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.40 8.06 71.98 0.58 -3.82 16 2 C -0.05 -2.23 0.60 -52.18 -0.03 -2.26 16 3 C -0.10 -4.44 8.06 71.98 0.58 -3.86 16 4 C 0.04 2.30 4.04 29.85 0.12 2.42 16 5 C -0.52 -29.80 7.65 25.60 0.20 -29.61 16 6 H 0.06 3.46 5.68 -2.91 -0.02 3.44 16 7 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 8 N -0.94 -58.35 13.29 21.45 0.28 -58.07 16 9 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 13 C 0.09 3.48 5.10 86.38 0.44 3.92 16 14 N -0.61 -21.10 9.18 -343.95 -3.16 -24.26 16 15 C 0.39 11.14 7.53 134.38 1.01 12.15 16 16 C -0.30 -8.41 9.24 22.60 0.21 -8.20 16 17 C 0.15 3.36 11.16 83.80 0.94 4.30 16 18 N -0.56 -11.55 9.92 -187.27 -1.86 -13.41 16 19 C 0.42 6.91 7.14 137.96 0.99 7.90 16 20 C -0.02 -0.21 5.84 29.10 0.17 -0.04 16 21 C -0.09 -1.10 4.91 -19.87 -0.10 -1.20 16 22 C -0.10 -1.25 9.64 22.27 0.21 -1.03 16 23 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 24 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 25 C -0.14 -1.93 10.05 22.27 0.22 -1.70 16 26 C -0.12 -1.69 9.70 22.27 0.22 -1.47 16 27 N -0.60 -11.77 5.42 -183.32 -0.99 -12.76 16 28 H 0.43 6.18 8.65 -92.71 -0.80 5.38 16 29 H 0.04 1.67 7.44 -2.39 -0.02 1.66 16 30 H 0.04 2.00 6.62 -2.39 -0.02 1.99 16 31 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.04 1.81 6.62 -2.39 -0.02 1.80 16 34 H 0.06 2.20 7.60 -2.39 -0.02 2.18 16 35 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 36 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 37 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.04 1.44 5.30 -2.38 -0.01 1.42 16 40 H 0.13 4.20 5.90 -2.91 -0.02 4.18 16 41 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 42 H 0.13 0.35 7.84 -2.39 -0.02 0.34 16 43 H 0.14 0.64 8.08 -2.39 -0.02 0.62 16 44 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 45 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 46 H 0.13 1.30 8.06 -2.91 -0.02 1.27 16 47 H 0.13 1.44 8.06 -2.91 -0.02 1.42 16 48 H 0.13 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -73.93 390.04 3.12 -70.81 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.16 Total: 15.32 kcal Atomic # 6 Polarization: -31.88 SS G_CDS: 6.66 Total: -25.22 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -5.72 Total: -108.49 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -73.93 3.12 -70.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340945393.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.547 kcal (2) G-P(sol) polarization free energy of solvation -73.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds