Wall clock time and date at job start Sat Apr 11 2020 01:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40092 * 126.03472 * 2 1 4 4 C 1.30838 * 108.20091 * 179.85261 * 3 2 1 5 5 C 1.39866 * 108.20664 * 0.40602 * 4 3 2 6 6 C 1.34942 * 126.04045 * 180.31127 * 2 1 3 7 7 C 1.50700 * 126.12473 * 0.02562 * 6 2 1 8 8 H 1.08999 * 109.50620 * 24.99605 * 7 6 2 9 9 C 1.53117 * 109.50498 * 264.91802 * 7 6 2 10 10 C 1.53119 * 109.16614 * 182.40331 * 9 7 6 11 11 C 1.53039 * 109.27468 * 57.65430 * 10 9 7 12 12 N 1.46840 * 109.52586 * 300.82188 * 11 10 9 13 13 C 1.46895 * 111.00229 * 185.83933 * 12 11 10 14 14 C 1.50703 * 109.47275 * 66.04782 * 13 12 11 15 15 C 1.38642 * 119.74588 * 269.73262 * 14 13 12 16 16 C 1.37620 * 120.24336 * 179.71996 * 15 14 13 17 17 C 1.40710 * 119.74626 * 0.56387 * 16 15 14 18 18 C 1.41398 * 120.24479 * 179.68295 * 17 16 15 19 19 H 1.08004 * 119.99766 * 204.40764 * 18 17 16 20 20 C 1.39940 * 119.99853 * 24.41055 * 18 17 16 21 21 N 1.30829 * 120.00287 * 17.84427 * 20 18 17 22 22 Si 1.86800 * 120.00166 * 197.84642 * 20 18 17 23 23 H 1.48501 * 109.47015 * 59.99601 * 22 20 18 24 24 H 1.48498 * 109.47467 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47045 * 300.00204 * 22 20 18 26 26 C 1.40719 * 119.51199 * 359.70907 * 17 16 15 27 27 C 1.37613 * 119.74578 * 359.97438 * 26 17 16 28 28 C 1.46856 * 111.23406 * 61.72202 * 12 11 10 29 29 H 1.09007 * 109.47365 * 269.68914 * 1 2 3 30 30 H 1.08999 * 109.47262 * 149.68459 * 1 2 3 31 31 H 1.08997 * 109.47591 * 29.68580 * 1 2 3 32 32 H 1.08002 * 125.89387 * 180.14505 * 4 3 2 33 33 H 1.07994 * 126.04627 * 179.73411 * 5 4 3 34 34 H 1.09003 * 109.52266 * 302.31292 * 9 7 6 35 35 H 1.09001 * 109.52478 * 62.49623 * 9 7 6 36 36 H 1.09000 * 109.50353 * 177.59326 * 10 9 7 37 37 H 1.08998 * 109.50456 * 297.67489 * 10 9 7 38 38 H 1.09003 * 109.46027 * 60.83750 * 11 10 9 39 39 H 1.08999 * 109.46113 * 180.80094 * 11 10 9 40 40 H 1.09006 * 109.47505 * 186.04353 * 13 12 11 41 41 H 1.08994 * 109.47649 * 306.04693 * 13 12 11 42 42 H 1.07993 * 119.87657 * 359.96710 * 15 14 13 43 43 H 1.07997 * 120.12545 * 180.27610 * 16 15 14 44 44 H 0.96996 * 119.99848 * 180.02562 * 21 20 18 45 45 H 1.08002 * 120.12770 * 180.02562 * 26 17 16 46 46 H 1.08002 * 119.87663 * 180.02562 * 27 26 17 47 47 H 1.08995 * 109.49824 * 178.28527 * 28 12 11 48 48 H 1.09006 * 109.42398 * 58.31138 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2891 1.1329 0.0000 4 6 3.5346 0.7322 0.0032 5 6 3.5437 -0.6664 -0.0041 6 6 2.2589 -1.0911 -0.0059 7 6 1.7973 -2.5257 -0.0143 8 1 0.7996 -2.5845 -0.4491 9 6 1.7619 -3.0597 1.4203 10 6 1.3501 -4.5343 1.3978 11 6 2.3334 -5.3202 0.5274 12 7 2.3299 -4.7716 -0.8347 13 6 3.1579 -5.5873 -1.7330 14 6 2.5331 -6.9493 -1.8935 15 6 2.8821 -7.9728 -1.0259 16 6 2.3136 -9.2190 -1.1596 17 6 1.3838 -9.4554 -2.1889 18 6 0.7982 -10.7335 -2.3400 19 1 0.4166 -11.0422 -3.3021 20 6 0.7132 -11.5983 -1.2431 21 7 0.8408 -11.1289 -0.0286 22 14 0.4176 -13.4229 -1.5129 23 1 1.5213 -13.9876 -2.3303 24 1 0.3695 -14.1160 -0.2005 25 1 -0.8726 -13.6157 -2.2226 26 6 1.0414 -8.4105 -3.0671 27 6 1.6175 -7.1706 -2.9107 28 6 2.7671 -3.3696 -0.8446 29 1 -0.3634 -0.0056 1.0277 30 1 -0.3634 -0.8871 -0.5187 31 1 -0.3634 0.8927 -0.5089 32 1 4.4053 1.3711 0.0063 33 1 4.4210 -1.2962 -0.0077 34 1 2.7508 -2.9644 1.8690 35 1 1.0397 -2.4887 2.0039 36 1 1.3645 -4.9317 2.4127 37 1 0.3452 -4.6252 0.9856 38 1 3.3355 -5.2400 0.9486 39 1 2.0348 -6.3680 0.4977 40 1 3.2251 -5.1015 -2.7065 41 1 4.1568 -5.6935 -1.3101 42 1 3.5998 -7.7904 -0.2398 43 1 2.5835 -10.0136 -0.4799 44 1 0.7822 -11.7285 0.7316 45 1 0.3285 -8.5809 -3.8604 46 1 1.3559 -6.3671 -3.5833 47 1 2.7831 -3.0008 -1.8701 48 1 3.7675 -3.2988 -0.4175 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342688277.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:34:41 Heat of formation + Delta-G solvation = 89.336307 kcal Electronic energy + Delta-G solvation = -27009.055441 eV Core-core repulsion = 23450.532296 eV Total energy + Delta-G solvation = -3558.523145 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.46049 -38.96155 -37.37098 -34.50466 -33.50676 -33.04137 -31.86629 -30.14074 -29.27137 -28.48330 -26.91118 -26.79381 -24.36278 -23.42821 -22.40326 -21.35793 -20.93995 -20.20205 -19.62855 -19.09164 -17.29080 -17.00191 -15.69907 -15.52178 -15.34800 -14.87609 -14.70839 -14.55922 -13.99922 -13.87158 -13.83587 -13.60468 -13.24015 -13.23378 -12.94657 -12.79010 -12.55587 -12.45788 -12.22349 -11.91872 -11.62168 -11.40260 -11.13643 -11.06336 -11.00216 -10.82364 -10.78481 -10.59588 -10.54990 -10.29627 -10.22321 -9.56195 -9.37919 -9.34935 -9.12409 -8.60980 -7.95035 -7.42315 -7.28386 -6.76438 -4.34673 1.75147 2.37408 2.72963 2.75109 3.05325 3.07662 3.09313 3.18450 3.92233 4.11498 4.40851 4.51839 4.67460 4.77810 4.82359 4.96421 5.01295 5.13134 5.19673 5.24392 5.37957 5.56412 5.61733 5.65185 5.68806 5.70227 5.73623 5.83097 5.89104 5.92797 5.99547 6.11163 6.19427 6.25823 6.36788 6.41571 6.44237 6.48768 6.54259 6.87290 6.94988 7.07530 7.26557 7.38314 7.46606 7.47942 7.59633 7.62530 7.89571 8.05669 8.14895 8.31084 8.64273 8.90018 8.98376 10.17795 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.027830 B = 0.002353 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.883666 B =11895.014089 C =12077.200425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.372 5.372 3 N -0.305 5.305 4 C 0.046 3.954 5 C -0.274 4.274 6 C 0.102 3.898 7 C -0.022 4.022 8 H 0.089 0.911 9 C -0.106 4.106 10 C -0.115 4.115 11 C 0.053 3.947 12 N -0.531 5.531 13 C 0.122 3.878 14 C -0.207 4.207 15 C -0.094 4.094 16 C -0.166 4.166 17 C 0.112 3.888 18 C -0.463 4.463 19 H 0.076 0.924 20 C 0.076 3.924 21 N -0.793 5.793 22 Si 0.907 3.093 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.229 4.229 27 C -0.069 4.069 28 C 0.069 3.931 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.181 0.819 33 H 0.145 0.855 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.024 0.976 42 H 0.082 0.918 43 H 0.116 0.884 44 H 0.280 0.720 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.259 15.864 3.434 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.154 5.154 3 N -0.126 5.126 4 C -0.140 4.140 5 C -0.304 4.304 6 C -0.027 4.027 7 C -0.043 4.043 8 H 0.107 0.893 9 C -0.144 4.144 10 C -0.153 4.153 11 C -0.075 4.075 12 N -0.256 5.256 13 C -0.004 4.004 14 C -0.209 4.209 15 C -0.113 4.113 16 C -0.185 4.185 17 C 0.110 3.890 18 C -0.493 4.493 19 H 0.094 0.906 20 C -0.141 4.141 21 N -0.418 5.418 22 Si 0.731 3.269 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.190 1.190 26 C -0.248 4.248 27 C -0.088 4.088 28 C -0.060 4.060 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.198 0.802 33 H 0.163 0.837 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.043 0.957 39 H 0.112 0.888 40 H 0.082 0.918 41 H 0.042 0.958 42 H 0.101 0.899 43 H 0.134 0.866 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.104 0.896 47 H 0.091 0.909 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.820 16.812 3.514 17.195 hybrid contribution 1.135 -1.408 0.322 1.837 sum 1.955 15.404 3.836 15.994 Atomic orbital electron populations 1.21860 0.74548 1.04553 1.03363 1.48476 1.06474 1.03387 1.57111 1.77340 1.01888 1.07977 1.25441 1.23799 0.95166 0.95134 0.99888 1.21225 0.96410 0.94834 1.17898 1.21105 0.91250 0.90196 1.00123 1.19848 1.00714 0.86227 0.97477 0.89305 1.21593 1.01783 0.96673 0.94394 1.21588 1.00466 0.93647 0.99595 1.22150 0.96961 1.00752 0.87604 1.61977 1.54218 1.00366 1.08994 1.20707 0.92564 0.92114 0.95003 1.18821 1.06799 0.93378 1.01876 1.20512 0.99385 0.94007 0.97425 1.21272 0.99224 0.96094 1.01955 1.17609 0.89071 0.92015 0.90314 1.19566 1.34761 0.98617 0.96341 0.90570 1.25895 0.92727 1.00946 0.94556 1.69820 1.35784 1.37126 0.99088 0.86397 0.79949 0.82075 0.78474 1.18858 1.20376 1.19029 1.20962 1.05610 0.93551 1.04699 1.20310 0.96096 0.95632 0.96714 1.21979 0.95358 0.89222 0.99392 0.90790 0.89252 0.89378 0.80213 0.83731 0.91775 0.92254 0.91423 0.90938 0.95723 0.88779 0.91754 0.95787 0.89936 0.86592 0.90891 0.89201 0.89585 0.90858 0.94737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.79 11.27 59.84 0.67 1.46 16 2 N -0.37 -4.32 4.01 -63.89 -0.26 -4.58 16 3 N -0.31 -3.92 12.58 30.62 0.39 -3.53 16 4 C 0.05 0.50 12.02 -17.37 -0.21 0.30 16 5 C -0.27 -3.10 9.97 -40.01 -0.40 -3.50 16 6 C 0.10 1.18 5.86 -82.26 -0.48 0.69 16 7 C -0.02 -0.25 2.54 -91.69 -0.23 -0.48 16 8 H 0.09 1.02 6.95 -51.93 -0.36 0.66 16 9 C -0.11 -1.17 5.27 -26.61 -0.14 -1.31 16 10 C -0.12 -1.45 6.09 -26.65 -0.16 -1.62 16 11 C 0.05 0.80 5.16 -3.84 -0.02 0.78 16 12 N -0.53 -8.18 4.64 -236.11 -1.10 -9.28 16 13 C 0.12 2.07 5.11 -4.98 -0.03 2.04 16 14 C -0.21 -4.30 4.91 -104.33 -0.51 -4.81 16 15 C -0.09 -2.10 7.85 -39.66 -0.31 -2.41 16 16 C -0.17 -4.19 8.70 -38.87 -0.34 -4.53 16 17 C 0.11 2.95 5.57 -106.82 -0.60 2.35 16 18 C -0.46 -12.16 9.05 -37.74 -0.34 -12.50 16 19 H 0.08 1.93 7.91 -52.48 -0.42 1.51 16 20 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 21 N -0.79 -20.17 10.95 55.55 0.61 -19.56 16 22 Si 0.91 18.46 29.59 -169.99 -5.03 13.43 16 23 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 25 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 26 C -0.23 -5.54 9.80 -38.87 -0.38 -5.92 16 27 C -0.07 -1.50 9.67 -39.66 -0.38 -1.89 16 28 C 0.07 0.88 4.35 -3.83 -0.02 0.86 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.61 6.98 -51.93 -0.36 0.25 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.14 1.46 7.34 -52.49 -0.39 1.07 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 1.72 5.77 -51.93 -0.30 1.42 16 40 H 0.06 1.03 7.92 -51.93 -0.41 0.62 16 41 H 0.02 0.39 8.06 -51.93 -0.42 -0.02 16 42 H 0.08 1.68 7.96 -52.49 -0.42 1.26 16 43 H 0.12 3.04 6.15 -52.49 -0.32 2.72 16 44 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 45 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 46 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 47 H 0.07 0.93 8.01 -51.93 -0.42 0.51 16 48 H 0.03 0.43 7.23 -51.93 -0.38 0.05 16 LS Contribution 381.20 15.07 5.74 5.74 Total: -1.00 -28.60 381.20 -11.16 -39.75 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -7.55 Total: 6.69 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -3.97 Total: -28.67 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.36 Total: -36.95 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.60 -11.16 -39.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342688277.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.091 kcal (2) G-P(sol) polarization free energy of solvation -28.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds