Wall clock time and date at job start Sat Apr 11 2020 01:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40092 * 126.03472 * 2 1 4 4 C 1.30838 * 108.20091 * 179.85261 * 3 2 1 5 5 C 1.39866 * 108.20664 * 0.40602 * 4 3 2 6 6 C 1.34942 * 126.04045 * 180.31127 * 2 1 3 7 7 C 1.50700 * 126.12473 * 0.02562 * 6 2 1 8 8 H 1.08999 * 109.50620 * 24.99605 * 7 6 2 9 9 C 1.53117 * 109.50498 * 264.91802 * 7 6 2 10 10 C 1.53119 * 109.16614 * 182.40331 * 9 7 6 11 11 C 1.53039 * 109.27468 * 57.65430 * 10 9 7 12 12 N 1.46840 * 109.52586 * 300.82188 * 11 10 9 13 13 C 1.46895 * 111.00229 * 185.83933 * 12 11 10 14 14 C 1.50703 * 109.47275 * 66.04782 * 13 12 11 15 15 C 1.38642 * 119.74588 * 269.73262 * 14 13 12 16 16 C 1.37620 * 120.24336 * 179.71996 * 15 14 13 17 17 C 1.40710 * 119.74626 * 0.56387 * 16 15 14 18 18 C 1.41398 * 120.24479 * 179.68295 * 17 16 15 19 19 H 1.08004 * 119.99766 * 204.40764 * 18 17 16 20 20 C 1.39940 * 119.99853 * 24.41055 * 18 17 16 21 21 N 1.30829 * 120.00287 * 17.84427 * 20 18 17 22 22 Si 1.86800 * 120.00166 * 197.84642 * 20 18 17 23 23 H 1.48501 * 109.47015 * 59.99601 * 22 20 18 24 24 H 1.48498 * 109.47467 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47045 * 300.00204 * 22 20 18 26 26 C 1.40719 * 119.51199 * 359.70907 * 17 16 15 27 27 C 1.37613 * 119.74578 * 359.97438 * 26 17 16 28 28 C 1.46856 * 111.23406 * 61.72202 * 12 11 10 29 29 H 1.09007 * 109.47365 * 269.68914 * 1 2 3 30 30 H 1.08999 * 109.47262 * 149.68459 * 1 2 3 31 31 H 1.08997 * 109.47591 * 29.68580 * 1 2 3 32 32 H 1.08002 * 125.89387 * 180.14505 * 4 3 2 33 33 H 1.07994 * 126.04627 * 179.73411 * 5 4 3 34 34 H 1.09003 * 109.52266 * 302.31292 * 9 7 6 35 35 H 1.09001 * 109.52478 * 62.49623 * 9 7 6 36 36 H 1.09000 * 109.50353 * 177.59326 * 10 9 7 37 37 H 1.08998 * 109.50456 * 297.67489 * 10 9 7 38 38 H 1.09003 * 109.46027 * 60.83750 * 11 10 9 39 39 H 1.08999 * 109.46113 * 180.80094 * 11 10 9 40 40 H 1.09006 * 109.47505 * 186.04353 * 13 12 11 41 41 H 1.08994 * 109.47649 * 306.04693 * 13 12 11 42 42 H 1.07993 * 119.87657 * 359.96710 * 15 14 13 43 43 H 1.07997 * 120.12545 * 180.27610 * 16 15 14 44 44 H 0.96996 * 119.99848 * 180.02562 * 21 20 18 45 45 H 1.08002 * 120.12770 * 180.02562 * 26 17 16 46 46 H 1.08002 * 119.87663 * 180.02562 * 27 26 17 47 47 H 1.08995 * 109.49824 * 178.28527 * 28 12 11 48 48 H 1.09006 * 109.42398 * 58.31138 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2891 1.1329 0.0000 4 6 3.5346 0.7322 0.0032 5 6 3.5437 -0.6664 -0.0041 6 6 2.2589 -1.0911 -0.0059 7 6 1.7973 -2.5257 -0.0143 8 1 0.7996 -2.5845 -0.4491 9 6 1.7619 -3.0597 1.4203 10 6 1.3501 -4.5343 1.3978 11 6 2.3334 -5.3202 0.5274 12 7 2.3299 -4.7716 -0.8347 13 6 3.1579 -5.5873 -1.7330 14 6 2.5331 -6.9493 -1.8935 15 6 2.8821 -7.9728 -1.0259 16 6 2.3136 -9.2190 -1.1596 17 6 1.3838 -9.4554 -2.1889 18 6 0.7982 -10.7335 -2.3400 19 1 0.4166 -11.0422 -3.3021 20 6 0.7132 -11.5983 -1.2431 21 7 0.8408 -11.1289 -0.0286 22 14 0.4176 -13.4229 -1.5129 23 1 1.5213 -13.9876 -2.3303 24 1 0.3695 -14.1160 -0.2005 25 1 -0.8726 -13.6157 -2.2226 26 6 1.0414 -8.4105 -3.0671 27 6 1.6175 -7.1706 -2.9107 28 6 2.7671 -3.3696 -0.8446 29 1 -0.3634 -0.0056 1.0277 30 1 -0.3634 -0.8871 -0.5187 31 1 -0.3634 0.8927 -0.5089 32 1 4.4053 1.3711 0.0063 33 1 4.4210 -1.2962 -0.0077 34 1 2.7508 -2.9644 1.8690 35 1 1.0397 -2.4887 2.0039 36 1 1.3645 -4.9317 2.4127 37 1 0.3452 -4.6252 0.9856 38 1 3.3355 -5.2400 0.9486 39 1 2.0348 -6.3680 0.4977 40 1 3.2251 -5.1015 -2.7065 41 1 4.1568 -5.6935 -1.3101 42 1 3.5998 -7.7904 -0.2398 43 1 2.5835 -10.0136 -0.4799 44 1 0.7822 -11.7285 0.7316 45 1 0.3285 -8.5809 -3.8604 46 1 1.3559 -6.3671 -3.5833 47 1 2.7831 -3.0008 -1.8701 48 1 3.7675 -3.2988 -0.4175 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342688277.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:34:40 Heat of formation + Delta-G solvation = 75.080843 kcal Electronic energy + Delta-G solvation = -27009.673604 eV Core-core repulsion = 23450.532296 eV Total energy + Delta-G solvation = -3559.141308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.29379 -40.22629 -38.99201 -36.00008 -34.81833 -34.01426 -32.87629 -31.81014 -31.09537 -29.45665 -28.40606 -27.57641 -25.86073 -24.47242 -23.70680 -22.80736 -22.12413 -21.63677 -20.89145 -20.01632 -19.17936 -17.87177 -17.15285 -16.73211 -16.38923 -16.25249 -15.89737 -15.67488 -15.50469 -15.16351 -14.90043 -14.76704 -14.46198 -14.40488 -14.09865 -13.91986 -13.77797 -13.51771 -13.35950 -13.25976 -13.18888 -12.89217 -12.74871 -12.57360 -12.33035 -12.12299 -12.05309 -11.74673 -11.68753 -11.52619 -11.45970 -11.25173 -11.13048 -10.96726 -10.18577 -9.44433 -9.33213 -9.20174 -9.04387 -8.60403 -6.29326 0.91005 0.99098 1.21059 1.38383 1.48972 1.53777 1.64857 1.91643 2.21898 2.68766 3.10890 3.59069 3.72792 3.80340 3.84107 3.91317 4.14852 4.17840 4.31137 4.36009 4.38124 4.39990 4.47877 4.59531 4.62395 4.66062 4.69099 4.70413 4.77379 4.80485 4.85333 4.90413 4.94148 5.04674 5.07244 5.10111 5.19396 5.21760 5.32364 5.42411 5.45948 5.52843 5.75598 5.76758 6.01133 6.08456 6.14483 6.18817 6.30114 6.38668 6.44816 6.75145 6.77508 6.98636 7.09091 8.35765 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.027830 B = 0.002353 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.883666 B =11895.014089 C =12077.200425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.379 5.379 3 N -0.336 5.336 4 C 0.042 3.958 5 C -0.283 4.283 6 C 0.096 3.904 7 C -0.013 4.013 8 H 0.089 0.911 9 C -0.097 4.097 10 C -0.110 4.110 11 C 0.054 3.946 12 N -0.540 5.540 13 C 0.126 3.874 14 C -0.191 4.191 15 C -0.092 4.092 16 C -0.190 4.190 17 C 0.079 3.921 18 C -0.504 4.504 19 H 0.072 0.928 20 C 0.036 3.964 21 N -0.825 5.825 22 Si 0.979 3.021 23 H -0.262 1.262 24 H -0.267 1.267 25 H -0.260 1.260 26 C -0.245 4.245 27 C -0.072 4.072 28 C 0.073 3.927 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.207 0.793 33 H 0.156 0.844 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.032 0.968 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.033 0.967 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.287 0.713 45 H 0.092 0.908 46 H 0.112 0.888 47 H 0.076 0.924 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.738 17.435 3.706 18.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.161 5.161 3 N -0.158 5.158 4 C -0.142 4.142 5 C -0.312 4.312 6 C -0.033 4.033 7 C -0.033 4.033 8 H 0.107 0.893 9 C -0.136 4.136 10 C -0.148 4.148 11 C -0.073 4.073 12 N -0.265 5.265 13 C 0.000 4.000 14 C -0.192 4.192 15 C -0.111 4.111 16 C -0.209 4.209 17 C 0.077 3.923 18 C -0.534 4.534 19 H 0.090 0.910 20 C -0.179 4.179 21 N -0.451 5.451 22 Si 0.800 3.200 23 H -0.186 1.186 24 H -0.192 1.192 25 H -0.185 1.185 26 C -0.265 4.265 27 C -0.091 4.091 28 C -0.055 4.055 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.224 0.776 33 H 0.173 0.827 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.051 0.949 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.097 0.903 45 H 0.110 0.890 46 H 0.130 0.870 47 H 0.095 0.905 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.292 18.410 3.785 18.839 hybrid contribution 1.030 -1.714 0.239 2.014 sum 2.322 16.696 4.024 17.331 Atomic orbital electron populations 1.22115 0.73043 1.05468 1.04468 1.48749 1.07504 1.03039 1.56806 1.77304 1.02812 1.08996 1.26640 1.24292 0.95518 0.95586 0.98840 1.21470 0.96745 0.95194 1.17838 1.21126 0.91581 0.90154 1.00466 1.19715 1.00273 0.85990 0.97331 0.89325 1.21515 1.02264 0.95326 0.94457 1.21531 0.99173 0.94614 0.99441 1.22084 0.97958 0.99164 0.88137 1.61861 1.54218 1.01594 1.08800 1.20644 0.92691 0.90196 0.96502 1.19243 1.05004 0.94971 0.99993 1.20711 0.99178 0.93297 0.97931 1.21231 1.00438 0.97032 1.02249 1.17941 0.89990 0.92912 0.91456 1.19794 1.36778 0.99904 0.96874 0.91004 1.26708 0.92029 1.05253 0.93897 1.69876 1.36565 1.38786 0.99856 0.85306 0.79829 0.76159 0.78728 1.18619 1.19172 1.18478 1.21154 1.06275 0.94315 1.04746 1.20617 0.95772 0.95361 0.97312 1.21985 0.96085 0.87362 1.00054 0.89586 0.88179 0.88694 0.77645 0.82684 0.91481 0.90966 0.90494 0.91895 0.94975 0.92326 0.90129 0.94866 0.88213 0.88457 0.90269 0.89003 0.86967 0.90509 0.93873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.25 11.27 127.77 1.44 2.69 16 2 N -0.38 -8.00 4.01 -356.04 -1.43 -9.43 16 3 N -0.34 -8.00 12.58 -57.02 -0.72 -8.72 16 4 C 0.04 0.84 12.02 85.23 1.02 1.87 16 5 C -0.28 -5.67 9.97 21.99 0.22 -5.45 16 6 C 0.10 1.97 5.86 41.41 0.24 2.22 16 7 C -0.01 -0.25 2.54 -11.49 -0.03 -0.28 16 8 H 0.09 1.80 6.95 -2.39 -0.02 1.78 16 9 C -0.10 -1.88 5.27 30.67 0.16 -1.72 16 10 C -0.11 -2.58 6.09 30.65 0.19 -2.39 16 11 C 0.05 1.57 5.16 86.33 0.45 2.02 16 12 N -0.54 -15.42 4.64 -900.92 -4.18 -19.61 16 13 C 0.13 3.96 5.11 85.56 0.44 4.40 16 14 C -0.19 -7.72 4.91 -19.67 -0.10 -7.82 16 15 C -0.09 -4.14 7.85 22.22 0.17 -3.96 16 16 C -0.19 -9.96 8.70 22.73 0.20 -9.76 16 17 C 0.08 4.32 5.57 -21.29 -0.12 4.20 16 18 C -0.50 -27.60 9.05 23.46 0.21 -27.39 16 19 H 0.07 3.81 7.91 -2.91 -0.02 3.79 16 20 C 0.04 1.82 5.14 85.25 0.44 2.26 16 21 N -0.82 -43.40 10.95 21.83 0.24 -43.16 16 22 Si 0.98 38.57 29.59 68.60 2.03 40.60 16 23 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 24 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 25 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 26 C -0.25 -12.14 9.80 22.73 0.22 -11.92 16 27 C -0.07 -3.10 9.67 22.22 0.21 -2.89 16 28 C 0.07 1.65 4.35 86.32 0.38 2.02 16 29 H 0.09 0.98 8.14 -2.38 -0.02 0.97 16 30 H 0.10 1.16 6.98 -2.39 -0.02 1.14 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.21 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.16 2.67 7.34 -2.91 -0.02 2.64 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.06 2.12 5.77 -2.39 -0.01 2.11 16 40 H 0.08 2.30 7.92 -2.38 -0.02 2.28 16 41 H 0.03 1.00 8.06 -2.39 -0.02 0.98 16 42 H 0.10 4.03 7.96 -2.91 -0.02 4.01 16 43 H 0.10 5.38 6.15 -2.91 -0.02 5.36 16 44 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 45 H 0.09 4.36 8.06 -2.91 -0.02 4.34 16 46 H 0.11 4.20 8.06 -2.91 -0.02 4.17 16 47 H 0.08 1.70 8.01 -2.39 -0.02 1.68 16 48 H 0.04 0.92 7.23 -2.38 -0.02 0.90 16 Total: -1.00 -63.29 381.20 2.63 -60.66 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: 0.94 Total: 31.54 kcal Atomic # 6 Polarization: -57.64 SS G_CDS: 5.75 Total: -51.89 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -6.09 Total: -80.91 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -63.29 2.63 -60.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342688277.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.740 kcal (2) G-P(sol) polarization free energy of solvation -63.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds