Wall clock time and date at job start Sat Apr 11 2020 01:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.57441 * 2 1 4 4 C 1.53115 * 109.56151 * 120.13921 * 2 1 3 5 5 C 1.53036 * 109.31408 * 177.52017 * 4 2 1 6 6 N 1.46844 * 109.52435 * 300.84017 * 5 4 2 7 7 C 1.46899 * 111.00396 * 185.83955 * 6 5 4 8 8 C 1.50703 * 109.46960 * 45.79060 * 7 6 5 9 9 C 1.38634 * 119.74979 * 269.72944 * 8 7 6 10 10 C 1.37613 * 120.24816 * 179.76609 * 9 8 7 11 11 C 1.40722 * 119.74554 * 0.48311 * 10 9 8 12 12 C 1.41391 * 120.24642 * 179.79138 * 11 10 9 13 13 H 1.07998 * 119.99874 * 204.35971 * 12 11 10 14 14 C 1.39948 * 119.99879 * 24.35969 * 12 11 10 15 15 N 1.30824 * 120.00141 * 17.87698 * 14 12 11 16 16 Si 1.86801 * 119.99868 * 197.87378 * 14 12 11 17 17 H 1.48501 * 109.47352 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47395 * 120.00314 * 16 14 12 19 19 H 1.48502 * 109.46967 * 240.00200 * 16 14 12 20 20 C 1.40711 * 119.50865 * 359.76803 * 11 10 9 21 21 C 1.37619 * 119.74730 * 0.02562 * 20 11 10 22 22 C 1.46850 * 111.19417 * 61.74144 * 6 5 4 23 23 C 1.53043 * 109.52548 * 298.25738 * 22 6 5 24 24 H 1.08999 * 109.50032 * 299.19824 * 23 22 6 25 25 N 1.46501 * 109.50275 * 179.12033 * 23 22 6 26 26 C 1.36884 * 126.39561 * 120.07802 * 25 23 22 27 27 C 1.34664 * 106.81535 * 180.02562 * 26 25 23 28 28 N 1.34133 * 108.02249 * 0.02562 * 27 26 25 29 29 C 1.30502 * 109.25526 * 359.72461 * 28 27 26 30 30 H 1.09001 * 109.47013 * 180.16037 * 1 2 3 31 31 H 1.09000 * 109.46904 * 300.15712 * 1 2 3 32 32 H 1.09001 * 109.47330 * 60.16096 * 1 2 3 33 33 H 1.09004 * 109.47221 * 57.57697 * 4 2 1 34 34 H 1.09004 * 109.54141 * 297.50563 * 4 2 1 35 35 H 1.09005 * 109.45893 * 180.82832 * 5 4 2 36 36 H 1.08994 * 109.46009 * 60.85942 * 5 4 2 37 37 H 1.08999 * 109.47462 * 165.79212 * 7 6 5 38 38 H 1.09000 * 109.46602 * 285.79390 * 7 6 5 39 39 H 1.08003 * 119.87747 * 359.97438 * 9 8 7 40 40 H 1.08003 * 120.13312 * 180.23012 * 10 9 8 41 41 H 0.97002 * 119.99972 * 180.02562 * 15 14 12 42 42 H 1.07998 * 120.12629 * 179.97438 * 20 11 10 43 43 H 1.07998 * 119.88006 * 179.97438 * 21 20 11 44 44 H 1.09004 * 109.45898 * 178.24258 * 22 6 5 45 45 H 1.09001 * 109.46304 * 58.27681 * 22 6 5 46 46 H 1.08000 * 126.59078 * 0.04082 * 26 25 23 47 47 H 1.08006 * 125.98964 * 180.02562 * 27 26 25 48 48 H 1.07994 * 125.64932 * 180.29200 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0426 -0.7244 1.2477 5 6 3.5717 -0.7754 1.2110 6 7 4.0103 -1.4796 -0.0006 7 6 5.4670 -1.6693 -0.0011 8 6 5.9093 -2.1668 1.3510 9 6 6.2646 -1.2581 2.3359 10 6 6.6653 -1.7009 3.5756 11 6 6.7234 -3.0822 3.8385 12 6 7.1379 -3.5489 5.1071 13 1 7.5570 -4.5392 5.2076 14 6 7.0050 -2.7277 6.2325 15 7 6.2008 -1.6965 6.1985 16 14 7.9760 -3.1042 7.7833 17 1 8.8065 -4.3158 7.5655 18 1 8.8554 -1.9526 8.1086 19 1 7.0375 -3.3438 8.9089 20 6 6.3655 -3.9954 2.8295 21 6 5.9636 -3.5298 1.5984 22 6 3.5708 -0.7759 -1.2122 23 6 2.0416 -0.7250 -1.2479 24 1 1.6441 -1.7397 -1.2679 25 7 1.6041 -0.0045 -2.4461 26 6 0.8186 -0.5014 -3.4510 27 6 0.6625 0.4895 -4.3495 28 7 1.3347 1.5620 -3.9056 29 6 1.8967 1.2751 -2.7632 30 1 -0.3633 -1.0277 0.0029 31 1 -0.3633 0.5163 0.8886 32 1 -0.3634 0.5113 -0.8914 33 1 1.6451 -1.7392 1.2678 34 1 1.7176 -0.1887 2.1397 35 1 3.9386 -1.3036 2.0911 36 1 3.9688 0.2396 1.2050 37 1 5.7381 -2.3996 -0.7635 38 1 5.9569 -0.7198 -0.2170 39 1 6.2235 -0.1986 2.1305 40 1 6.9382 -0.9913 4.3427 41 1 6.1090 -1.1270 6.9784 42 1 6.4068 -5.0575 3.0203 43 1 5.6888 -4.2288 0.8224 44 1 3.9372 -1.3045 -2.0923 45 1 3.9680 0.2392 -1.2069 46 1 0.4036 -1.4966 -3.5116 47 1 0.0953 0.4309 -5.2668 48 1 2.4979 1.9488 -2.1708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342756728.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:35:15 Heat of formation + Delta-G solvation = 77.468468 kcal Electronic energy + Delta-G solvation = -27367.350105 eV Core-core repulsion = 23808.312332 eV Total energy + Delta-G solvation = -3559.037773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.24992 -39.34777 -37.61043 -35.23915 -33.60728 -33.13232 -30.64583 -29.88971 -29.44204 -29.09406 -28.16563 -25.98440 -23.72954 -23.53766 -21.94735 -21.62536 -21.19246 -20.80933 -19.81434 -19.37773 -17.51834 -17.37131 -15.70278 -15.45902 -15.30762 -15.00229 -14.80946 -14.51436 -14.15795 -14.05056 -13.81407 -13.69084 -13.59270 -13.36436 -13.10906 -12.76194 -12.56293 -12.38136 -12.05928 -11.97828 -11.68510 -11.57326 -11.46362 -11.16437 -11.05294 -10.88158 -10.75723 -10.57831 -10.52267 -10.23847 -10.03583 -9.68553 -9.56129 -9.45663 -9.20733 -8.59637 -8.14146 -7.51396 -7.36910 -6.84677 -4.42840 1.99288 2.56078 2.70741 2.99499 3.02760 3.07064 3.10631 3.11183 3.86647 4.10988 4.31580 4.51849 4.60359 4.62157 4.66416 4.79105 4.97942 5.14340 5.25915 5.31627 5.39697 5.45555 5.51419 5.53284 5.62219 5.63833 5.67964 5.73231 5.81151 5.87025 5.96280 6.03261 6.17118 6.22268 6.26454 6.32389 6.37013 6.48522 6.66095 6.87117 6.99876 7.08784 7.16002 7.28723 7.30880 7.33610 7.53502 7.79770 7.97849 8.00601 8.04257 8.22232 8.55913 8.81879 8.89231 10.09329 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.026884 B = 0.002529 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.258058 B =11067.623969 C =11526.498935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.108 4.108 5 C 0.050 3.950 6 N -0.528 5.528 7 C 0.123 3.877 8 C -0.219 4.219 9 C -0.093 4.093 10 C -0.166 4.166 11 C 0.113 3.887 12 C -0.460 4.460 13 H 0.078 0.922 14 C 0.076 3.924 15 N -0.791 5.791 16 Si 0.906 3.094 17 H -0.260 1.260 18 H -0.272 1.272 19 H -0.274 1.274 20 C -0.230 4.230 21 C -0.067 4.067 22 C 0.049 3.951 23 C 0.142 3.858 24 H 0.108 0.892 25 N -0.445 5.445 26 C -0.053 4.053 27 C -0.037 4.037 28 N -0.499 5.499 29 C 0.182 3.818 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.027 0.973 37 H 0.066 0.934 38 H 0.025 0.975 39 H 0.082 0.918 40 H 0.117 0.883 41 H 0.280 0.720 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.036 0.964 46 H 0.171 0.829 47 H 0.166 0.834 48 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.888 3.243 -10.639 14.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.091 0.909 4 C -0.147 4.147 5 C -0.077 4.077 6 N -0.253 5.253 7 C -0.003 4.003 8 C -0.221 4.221 9 C -0.112 4.112 10 C -0.185 4.185 11 C 0.111 3.889 12 C -0.489 4.489 13 H 0.096 0.904 14 C -0.142 4.142 15 N -0.416 5.416 16 Si 0.731 3.269 17 H -0.184 1.184 18 H -0.197 1.197 19 H -0.200 1.200 20 C -0.249 4.249 21 C -0.086 4.086 22 C -0.080 4.080 23 C 0.039 3.961 24 H 0.126 0.874 25 N -0.127 5.127 26 C -0.186 4.186 27 C -0.185 4.185 28 N -0.218 5.218 29 C -0.100 4.100 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.123 0.877 36 H 0.046 0.954 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.100 0.900 40 H 0.135 0.865 41 H 0.091 0.909 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.095 0.905 45 H 0.054 0.946 46 H 0.188 0.812 47 H 0.183 0.817 48 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -9.097 3.644 -10.772 14.563 hybrid contribution 0.655 -0.088 1.166 1.340 sum -8.442 3.556 -9.606 13.274 Atomic orbital electron populations 1.21802 0.94425 1.02101 1.01942 1.21557 0.96395 0.99737 0.94123 0.90863 1.21657 0.95936 1.01101 0.95965 1.22258 0.93923 0.96682 0.94839 1.62066 1.14497 1.48265 1.00506 1.20731 0.84585 0.98273 0.96708 1.18795 1.14863 0.93528 0.94879 1.20514 1.00356 0.96293 0.94018 1.21280 1.05593 0.96272 0.95396 1.17637 0.87529 0.91558 0.92197 1.19653 1.36301 1.01327 0.91665 0.90390 1.25918 0.93461 0.94009 1.00808 1.69825 1.27317 1.13449 1.30978 0.86290 0.80292 0.79743 0.80606 1.18367 1.19681 1.19963 1.20972 1.10961 0.97781 0.95208 1.20329 0.98535 0.93817 0.95890 1.22304 0.92620 0.97729 0.95331 1.21593 0.95622 0.96698 0.82168 0.87420 1.45687 1.37498 1.11750 1.17763 1.22733 1.02670 1.01560 0.91681 1.22257 1.04823 0.90064 1.01345 1.70298 1.12861 1.28817 1.09778 1.24803 1.03939 0.85451 0.95840 0.92425 0.92112 0.92808 0.90759 0.90758 0.87686 0.95433 0.91530 0.95711 0.89991 0.86526 0.90898 0.89083 0.89416 0.90474 0.94586 0.81193 0.81676 0.78651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.07 37.16 0.34 -1.03 16 2 C -0.10 -1.02 2.23 -90.50 -0.20 -1.22 16 3 H 0.07 0.77 7.88 -51.92 -0.41 0.36 16 4 C -0.11 -1.31 5.38 -26.65 -0.14 -1.45 16 5 C 0.05 0.75 4.58 -3.84 -0.02 0.73 16 6 N -0.53 -7.67 4.80 -236.11 -1.13 -8.80 16 7 C 0.12 2.00 5.42 -4.97 -0.03 1.97 16 8 C -0.22 -4.36 4.13 -104.33 -0.43 -4.79 16 9 C -0.09 -1.99 7.77 -39.66 -0.31 -2.30 16 10 C -0.17 -4.07 8.70 -38.87 -0.34 -4.40 16 11 C 0.11 2.89 5.58 -106.83 -0.60 2.29 16 12 C -0.46 -11.78 9.05 -37.74 -0.34 -12.12 16 13 H 0.08 1.94 7.91 -52.49 -0.42 1.52 16 14 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 15 N -0.79 -19.58 10.95 55.55 0.61 -18.97 16 16 Si 0.91 18.05 29.60 -169.99 -5.03 13.02 16 17 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 18 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 20 C -0.23 -5.39 9.80 -38.87 -0.38 -5.77 16 21 C -0.07 -1.41 9.67 -39.66 -0.38 -1.79 16 22 C 0.05 0.59 4.77 -3.83 -0.02 0.57 16 23 C 0.14 1.49 2.44 -67.85 -0.17 1.32 16 24 H 0.11 1.13 8.08 -51.93 -0.42 0.71 16 25 N -0.45 -4.70 1.97 -111.37 -0.22 -4.92 16 26 C -0.05 -0.53 11.54 -16.56 -0.19 -0.72 16 27 C -0.04 -0.41 11.87 -17.81 -0.21 -0.62 16 28 N -0.50 -6.64 11.25 -14.67 -0.16 -6.80 16 29 C 0.18 2.11 11.49 -90.37 -1.04 1.07 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.55 7.68 -51.93 -0.40 0.15 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 1.95 5.65 -51.93 -0.29 1.66 16 36 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 38 H 0.02 0.39 8.02 -51.93 -0.42 -0.02 16 39 H 0.08 1.62 8.06 -52.48 -0.42 1.20 16 40 H 0.12 2.98 6.16 -52.48 -0.32 2.66 16 41 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 42 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 43 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 44 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 45 H 0.04 0.43 7.93 -51.93 -0.41 0.02 16 46 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 47 H 0.17 1.46 8.06 -52.48 -0.42 1.04 16 48 H 0.20 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 381.39 15.07 5.75 5.75 Total: -1.00 -26.75 381.39 -12.45 -39.21 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -7.71 Total: 8.03 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: -4.55 Total: -26.51 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: -0.91 Total: -39.50 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -26.75 -12.45 -39.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342756728.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.676 kcal (2) G-P(sol) polarization free energy of solvation -26.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds