Wall clock time and date at job start Sat Apr 11 2020 01:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99899 * 2 1 4 4 C 1.46899 * 110.99882 * 123.95603 * 2 1 3 5 5 C 1.50705 * 109.47063 * 169.99981 * 4 2 1 6 6 C 1.33637 * 126.03608 * 90.02716 * 5 4 2 7 7 N 1.31784 * 114.49947 * 180.02562 * 6 5 4 8 8 C 1.29030 * 117.12334 * 359.97438 * 7 6 5 9 9 C 1.50704 * 124.91644 * 180.02562 * 8 7 6 10 10 N 1.46896 * 109.46950 * 89.97148 * 9 8 7 11 11 C 1.46900 * 110.99833 * 159.34568 * 10 9 8 12 12 C 1.50704 * 109.47167 * 190.98624 * 11 10 9 13 13 H 1.08003 * 119.99733 * 355.08860 * 12 11 10 14 14 C 1.37878 * 119.99883 * 175.08863 * 12 11 10 15 15 N 1.31511 * 119.99749 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99999 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47258 * 90.00283 * 16 14 12 18 18 H 1.48506 * 109.47196 * 210.00210 * 16 14 12 19 19 H 1.48504 * 109.47113 * 329.99929 * 16 14 12 20 20 C 1.46901 * 111.00390 * 283.30686 * 10 9 8 21 21 C 1.53004 * 109.46701 * 314.13893 * 20 10 9 22 22 C 1.52995 * 109.46936 * 84.37382 * 21 20 10 23 23 C 1.53009 * 109.46908 * 204.37254 * 21 20 10 24 24 C 1.53001 * 109.47222 * 324.36963 * 21 20 10 25 25 S 1.70978 * 110.16605 * 359.72553 * 8 7 6 26 26 H 1.08996 * 109.47366 * 296.04476 * 1 2 3 27 27 H 1.09000 * 109.46981 * 56.04239 * 1 2 3 28 28 H 1.09000 * 109.47249 * 176.04548 * 1 2 3 29 29 H 1.09003 * 109.47102 * 183.95082 * 3 2 1 30 30 H 1.08995 * 109.47546 * 303.95489 * 3 2 1 31 31 H 1.09001 * 109.46954 * 63.95881 * 3 2 1 32 32 H 1.09002 * 109.47233 * 49.99721 * 4 2 1 33 33 H 1.09000 * 109.47146 * 290.00139 * 4 2 1 34 34 H 1.08001 * 122.75264 * 359.97438 * 6 5 4 35 35 H 1.08995 * 109.46796 * 209.97659 * 9 8 7 36 36 H 1.08999 * 109.46850 * 329.97487 * 9 8 7 37 37 H 1.08998 * 109.47626 * 310.99221 * 11 10 9 38 38 H 1.09006 * 109.46434 * 70.99102 * 11 10 9 39 39 H 0.97000 * 119.99410 * 179.97438 * 15 14 12 40 40 H 1.08998 * 109.47270 * 74.13727 * 20 10 9 41 41 H 1.09004 * 109.47267 * 194.14257 * 20 10 9 42 42 H 1.08996 * 109.47541 * 60.48433 * 22 21 20 43 43 H 1.09006 * 109.47088 * 180.48543 * 22 21 20 44 44 H 1.09001 * 109.47287 * 300.48086 * 22 21 20 45 45 H 1.08995 * 109.47118 * 59.99625 * 23 21 20 46 46 H 1.08994 * 109.46833 * 179.97438 * 23 21 20 47 47 H 1.09004 * 109.46546 * 300.00239 * 23 21 20 48 48 H 1.08995 * 109.46881 * 52.65835 * 24 21 20 49 49 H 1.08995 * 109.46794 * 172.65982 * 24 21 20 50 50 H 1.09000 * 109.47387 * 292.65984 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4817 -0.9526 0.9728 6 6 4.4323 -0.1298 1.4260 7 7 5.6631 -0.5137 1.1529 8 6 5.8035 -1.6148 0.4950 9 6 7.1252 -2.2155 0.0907 10 7 7.5983 -3.1161 1.1505 11 6 8.5835 -4.0722 0.6278 12 6 8.8432 -5.1402 1.6589 13 1 8.3893 -5.0688 2.6363 14 6 9.6601 -6.2083 1.3544 15 7 9.8863 -7.1405 2.2540 16 14 10.4457 -6.3312 -0.3359 17 1 11.7637 -5.6472 -0.3202 18 1 10.6342 -7.7607 -0.6914 19 1 9.5638 -5.6836 -1.3399 20 6 8.1501 -2.3559 2.2799 21 6 9.0766 -1.2587 1.7521 22 6 8.2479 -0.0286 1.3766 23 6 10.0885 -0.8806 2.8357 24 6 9.8198 -1.7696 0.5162 25 16 4.2733 -2.2979 0.1556 26 1 -0.3634 0.4512 0.9233 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3634 -1.0252 -0.0709 29 1 3.0827 1.3432 -0.0708 30 1 1.5898 1.9164 -0.8524 31 1 1.7044 1.8723 0.9234 32 1 1.5088 -1.7407 1.1756 33 1 1.7974 -0.2249 2.0628 34 1 4.2102 0.7760 1.9706 35 1 7.0009 -2.7773 -0.8350 36 1 7.8543 -1.4198 -0.0622 37 1 8.1969 -4.5316 -0.2819 38 1 9.5136 -3.5495 0.4039 39 1 10.4608 -7.8921 2.0397 40 1 7.3358 -1.9030 2.8455 41 1 8.7139 -3.0266 2.9285 42 1 7.7252 0.3406 2.2590 43 1 8.9070 0.7501 0.9925 44 1 7.5212 -0.2999 0.6108 45 1 10.6787 -1.7570 3.1032 46 1 10.7487 -0.0993 2.4595 47 1 9.5589 -0.5167 3.7162 48 1 9.1012 -2.1600 -0.2043 49 1 10.3791 -0.9505 0.0642 50 1 10.5087 -2.5622 0.8083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347779465.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:35:37 Heat of formation + Delta-G solvation = 122.760727 kcal Electronic energy + Delta-G solvation = -26868.764072 eV Core-core repulsion = 23447.134270 eV Total energy + Delta-G solvation = -3421.629802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.31357 -38.99691 -37.44125 -33.96951 -32.61051 -31.57838 -29.31799 -28.01727 -27.88058 -26.81727 -26.58950 -25.80094 -24.32771 -22.71866 -21.97013 -20.38686 -19.14937 -18.61207 -17.65282 -16.82783 -15.88523 -15.77247 -15.41710 -15.21074 -14.95051 -14.66227 -14.38363 -13.97782 -13.60952 -13.54464 -13.16062 -12.84086 -12.75533 -12.68724 -12.39531 -12.34477 -12.04959 -11.90426 -11.88186 -11.43062 -11.34863 -11.18381 -11.07610 -10.96857 -10.91009 -10.70534 -10.46541 -10.23596 -10.04007 -9.80407 -9.71327 -9.26595 -9.04985 -8.93182 -8.75730 -8.54291 -8.47062 -7.14905 -6.02114 -3.97199 0.90432 1.59677 2.08249 2.98679 3.28345 3.36945 3.37300 3.78656 4.35938 4.43387 4.70277 4.83661 4.94351 4.98386 5.06022 5.22659 5.27300 5.28153 5.31236 5.33377 5.36545 5.39265 5.46277 5.54642 5.62545 5.68899 5.81834 5.85973 5.98218 6.04137 6.08815 6.21461 6.24759 6.26365 6.41390 6.45960 6.58032 6.64806 6.66577 6.69804 6.72811 6.89234 6.98127 7.03708 7.05396 7.62287 7.90547 7.97007 8.06228 8.68395 9.06644 9.59381 11.11330 Molecular weight = 325.19amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.003544 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.497409 B = 7897.837736 C = 8907.544759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.022 3.978 4 C 0.136 3.864 5 C -0.239 4.239 6 C 0.041 3.959 7 N -0.470 5.470 8 C 0.077 3.923 9 C 0.077 3.923 10 N -0.513 5.513 11 C 0.122 3.878 12 C -0.501 4.501 13 H 0.078 0.922 14 C 0.068 3.932 15 N -0.902 5.902 16 Si 0.870 3.130 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.266 1.266 20 C 0.074 3.926 21 C -0.100 4.100 22 C -0.153 4.153 23 C -0.134 4.134 24 C -0.166 4.166 25 S 0.158 5.842 26 H 0.026 0.974 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.025 0.975 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.162 0.838 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.025 0.975 38 H 0.032 0.968 39 H 0.262 0.738 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.030 0.970 44 H 0.095 0.905 45 H 0.057 0.943 46 H 0.045 0.955 47 H 0.049 0.951 48 H 0.073 0.927 49 H 0.041 0.959 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.557 16.798 -4.609 22.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.127 4.127 4 C 0.006 3.994 5 C -0.361 4.361 6 C -0.112 4.112 7 N -0.184 5.184 8 C -0.201 4.201 9 C -0.053 4.053 10 N -0.237 5.237 11 C -0.003 4.003 12 C -0.539 4.539 13 H 0.096 0.904 14 C -0.133 4.133 15 N -0.542 5.542 16 Si 0.697 3.303 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.190 1.190 20 C -0.055 4.055 21 C -0.101 4.101 22 C -0.209 4.209 23 C -0.191 4.191 24 C -0.222 4.222 25 S 0.414 5.586 26 H 0.044 0.956 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.180 0.820 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.043 0.957 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.050 0.950 44 H 0.113 0.887 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.092 0.908 49 H 0.060 0.940 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.565 15.461 -5.221 21.220 hybrid contribution 0.647 1.404 0.226 1.562 sum -12.918 16.865 -4.995 21.823 Atomic orbital electron populations 1.22386 0.86904 1.02469 1.00577 1.61972 1.07733 1.14267 1.42842 1.22441 1.01679 0.88268 1.00263 1.20333 0.88258 0.98967 0.91816 1.25640 0.99985 1.00624 1.09832 1.21652 0.86570 1.00885 1.02142 1.66620 1.22873 1.14455 1.14498 1.27223 1.00069 0.93925 0.98893 1.21753 0.89799 0.98092 0.95698 1.62110 1.40215 1.14650 1.06688 1.21180 0.90918 0.91527 0.96704 1.21001 1.28047 1.04691 1.00186 0.90356 1.24856 0.96362 0.95539 0.96538 1.69890 1.38410 1.11758 1.34106 0.86948 0.80126 0.77482 0.85722 1.20311 1.21282 1.19044 1.22207 0.95947 0.93396 0.93939 1.21185 0.96190 0.97073 0.95700 1.22679 0.99193 0.95832 1.03233 1.21799 0.98397 1.00939 0.98011 1.22796 1.00899 1.00487 0.98029 1.84051 0.99799 1.23160 1.51555 0.95583 0.91184 0.91181 0.90825 0.91458 0.95609 0.89639 0.92914 0.82047 0.90048 0.87421 0.95749 0.95061 0.92766 0.92293 0.89351 0.92656 0.95045 0.88722 0.92402 0.93636 0.93180 0.90819 0.94032 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.57 60.06 0.57 0.75 16 2 N -0.54 -5.17 5.01 -252.72 -1.27 -6.44 16 3 C 0.02 0.18 9.27 60.06 0.56 0.74 16 4 C 0.14 1.34 5.50 -4.97 -0.03 1.32 16 5 C -0.24 -2.93 5.50 -35.92 -0.20 -3.13 16 6 C 0.04 0.53 9.85 -19.18 -0.19 0.34 16 7 N -0.47 -7.03 7.23 -11.86 -0.09 -7.12 16 8 C 0.08 1.20 6.17 -13.45 -0.08 1.12 16 9 C 0.08 1.29 4.01 -4.98 -0.02 1.27 16 10 N -0.51 -10.32 4.61 -237.51 -1.09 -11.41 16 11 C 0.12 2.78 3.13 -4.97 -0.02 2.76 16 12 C -0.50 -13.77 8.93 -34.44 -0.31 -14.08 16 13 H 0.08 2.38 7.41 -52.48 -0.39 2.00 16 14 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 15 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 16 Si 0.87 20.96 27.57 -169.99 -4.69 16.27 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.27 -6.09 6.40 56.52 0.36 -5.73 16 20 C 0.07 1.41 4.77 -3.82 -0.02 1.39 16 21 C -0.10 -1.64 0.77 -154.50 -0.12 -1.75 16 22 C -0.15 -2.30 6.59 37.15 0.24 -2.05 16 23 C -0.13 -2.05 8.35 37.16 0.31 -1.74 16 24 C -0.17 -2.78 6.21 37.16 0.23 -2.55 16 25 S 0.16 2.24 23.18 -107.50 -2.49 -0.25 16 26 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.07 0.45 8.12 -51.93 -0.42 0.02 16 28 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 29 H 0.07 0.72 6.32 -51.93 -0.33 0.39 16 30 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 31 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.81 8.06 -51.93 -0.42 0.39 16 33 H 0.05 0.47 8.12 -51.93 -0.42 0.05 16 34 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.08 1.31 7.70 -51.93 -0.40 0.91 16 36 H 0.11 1.73 2.39 -51.93 -0.12 1.61 16 37 H 0.02 0.57 6.51 -51.93 -0.34 0.23 16 38 H 0.03 0.70 2.86 -52.02 -0.15 0.55 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.06 1.13 7.80 -51.93 -0.40 0.73 16 41 H 0.09 1.93 6.32 -51.93 -0.33 1.60 16 42 H 0.05 0.85 7.82 -51.93 -0.41 0.45 16 43 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.09 1.46 2.54 -51.93 -0.13 1.33 16 45 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.07 1.25 3.29 -51.93 -0.17 1.08 16 49 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.07 1.38 6.66 -51.93 -0.35 1.04 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -29.83 377.76 -10.49 -40.32 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -8.18 Total: 3.28 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 0.84 Total: -13.77 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -1.67 Total: -51.55 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.69 Total: 16.27 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.49 Total: -0.25 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.83 -10.49 -40.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347779465.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.081 kcal (2) G-P(sol) polarization free energy of solvation -29.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds