Wall clock time and date at job start Sat Apr 11 2020 01:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99899 * 2 1 4 4 C 1.46899 * 110.99882 * 123.95603 * 2 1 3 5 5 C 1.50705 * 109.47063 * 169.99981 * 4 2 1 6 6 C 1.33637 * 126.03608 * 90.02716 * 5 4 2 7 7 N 1.31784 * 114.49947 * 180.02562 * 6 5 4 8 8 C 1.29030 * 117.12334 * 359.97438 * 7 6 5 9 9 C 1.50704 * 124.91644 * 180.02562 * 8 7 6 10 10 N 1.46896 * 109.46950 * 89.97148 * 9 8 7 11 11 C 1.46900 * 110.99833 * 159.34568 * 10 9 8 12 12 C 1.50704 * 109.47167 * 190.98624 * 11 10 9 13 13 H 1.08003 * 119.99733 * 355.08860 * 12 11 10 14 14 C 1.37878 * 119.99883 * 175.08863 * 12 11 10 15 15 N 1.31511 * 119.99749 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99999 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47258 * 90.00283 * 16 14 12 18 18 H 1.48506 * 109.47196 * 210.00210 * 16 14 12 19 19 H 1.48504 * 109.47113 * 329.99929 * 16 14 12 20 20 C 1.46901 * 111.00390 * 283.30686 * 10 9 8 21 21 C 1.53004 * 109.46701 * 314.13893 * 20 10 9 22 22 C 1.52995 * 109.46936 * 84.37382 * 21 20 10 23 23 C 1.53009 * 109.46908 * 204.37254 * 21 20 10 24 24 C 1.53001 * 109.47222 * 324.36963 * 21 20 10 25 25 S 1.70978 * 110.16605 * 359.72553 * 8 7 6 26 26 H 1.08996 * 109.47366 * 296.04476 * 1 2 3 27 27 H 1.09000 * 109.46981 * 56.04239 * 1 2 3 28 28 H 1.09000 * 109.47249 * 176.04548 * 1 2 3 29 29 H 1.09003 * 109.47102 * 183.95082 * 3 2 1 30 30 H 1.08995 * 109.47546 * 303.95489 * 3 2 1 31 31 H 1.09001 * 109.46954 * 63.95881 * 3 2 1 32 32 H 1.09002 * 109.47233 * 49.99721 * 4 2 1 33 33 H 1.09000 * 109.47146 * 290.00139 * 4 2 1 34 34 H 1.08001 * 122.75264 * 359.97438 * 6 5 4 35 35 H 1.08995 * 109.46796 * 209.97659 * 9 8 7 36 36 H 1.08999 * 109.46850 * 329.97487 * 9 8 7 37 37 H 1.08998 * 109.47626 * 310.99221 * 11 10 9 38 38 H 1.09006 * 109.46434 * 70.99102 * 11 10 9 39 39 H 0.97000 * 119.99410 * 179.97438 * 15 14 12 40 40 H 1.08998 * 109.47270 * 74.13727 * 20 10 9 41 41 H 1.09004 * 109.47267 * 194.14257 * 20 10 9 42 42 H 1.08996 * 109.47541 * 60.48433 * 22 21 20 43 43 H 1.09006 * 109.47088 * 180.48543 * 22 21 20 44 44 H 1.09001 * 109.47287 * 300.48086 * 22 21 20 45 45 H 1.08995 * 109.47118 * 59.99625 * 23 21 20 46 46 H 1.08994 * 109.46833 * 179.97438 * 23 21 20 47 47 H 1.09004 * 109.46546 * 300.00239 * 23 21 20 48 48 H 1.08995 * 109.46881 * 52.65835 * 24 21 20 49 49 H 1.08995 * 109.46794 * 172.65982 * 24 21 20 50 50 H 1.09000 * 109.47387 * 292.65984 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4817 -0.9526 0.9728 6 6 4.4323 -0.1298 1.4260 7 7 5.6631 -0.5137 1.1529 8 6 5.8035 -1.6148 0.4950 9 6 7.1252 -2.2155 0.0907 10 7 7.5983 -3.1161 1.1505 11 6 8.5835 -4.0722 0.6278 12 6 8.8432 -5.1402 1.6589 13 1 8.3893 -5.0688 2.6363 14 6 9.6601 -6.2083 1.3544 15 7 9.8863 -7.1405 2.2540 16 14 10.4457 -6.3312 -0.3359 17 1 11.7637 -5.6472 -0.3202 18 1 10.6342 -7.7607 -0.6914 19 1 9.5638 -5.6836 -1.3399 20 6 8.1501 -2.3559 2.2799 21 6 9.0766 -1.2587 1.7521 22 6 8.2479 -0.0286 1.3766 23 6 10.0885 -0.8806 2.8357 24 6 9.8198 -1.7696 0.5162 25 16 4.2733 -2.2979 0.1556 26 1 -0.3634 0.4512 0.9233 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3634 -1.0252 -0.0709 29 1 3.0827 1.3432 -0.0708 30 1 1.5898 1.9164 -0.8524 31 1 1.7044 1.8723 0.9234 32 1 1.5088 -1.7407 1.1756 33 1 1.7974 -0.2249 2.0628 34 1 4.2102 0.7760 1.9706 35 1 7.0009 -2.7773 -0.8350 36 1 7.8543 -1.4198 -0.0622 37 1 8.1969 -4.5316 -0.2819 38 1 9.5136 -3.5495 0.4039 39 1 10.4608 -7.8921 2.0397 40 1 7.3358 -1.9030 2.8455 41 1 8.7139 -3.0266 2.9285 42 1 7.7252 0.3406 2.2590 43 1 8.9070 0.7501 0.9925 44 1 7.5212 -0.2999 0.6108 45 1 10.6787 -1.7570 3.1032 46 1 10.7487 -0.0993 2.4595 47 1 9.5589 -0.5167 3.7162 48 1 9.1012 -2.1600 -0.2043 49 1 10.3791 -0.9505 0.0642 50 1 10.5087 -2.5622 0.8083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347779465.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:35:34 Heat of formation + Delta-G solvation = 102.862940 kcal Electronic energy + Delta-G solvation = -26869.626905 eV Core-core repulsion = 23447.134270 eV Total energy + Delta-G solvation = -3422.492635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.188 amu Computer time = 4.61 seconds Orbital eigenvalues (eV) -41.61995 -40.17194 -38.21088 -35.55225 -34.45666 -32.83903 -30.65024 -29.54474 -28.52766 -28.23753 -27.87563 -26.90289 -25.66660 -24.11819 -22.74718 -22.06761 -20.25319 -19.97416 -18.90760 -18.72137 -17.02399 -16.67464 -16.62348 -16.38854 -16.23493 -16.00108 -15.43577 -15.34463 -15.17250 -14.72088 -14.59490 -14.32413 -14.05274 -13.68427 -13.44534 -13.18825 -13.09780 -13.00227 -12.83788 -12.77225 -12.60128 -12.55916 -12.46909 -12.35454 -12.21291 -12.05262 -11.95929 -11.81201 -11.67376 -11.40923 -11.23811 -11.20765 -10.69584 -10.16104 -10.09374 -9.72604 -9.28816 -8.69567 -8.21477 -6.21295 -0.18388 0.52032 0.99716 1.37580 1.40017 1.49758 1.91631 2.39253 3.07866 3.11901 3.20245 3.54150 3.87547 3.93898 3.98655 4.08370 4.12171 4.14772 4.29061 4.42319 4.48691 4.54618 4.55794 4.58376 4.66643 4.72199 4.75097 4.76577 4.85820 4.90396 4.91222 4.99153 5.03974 5.04976 5.09333 5.11251 5.13845 5.25877 5.30196 5.41670 5.44987 5.51338 5.63949 5.80714 5.97256 6.04839 6.07035 6.38462 6.69725 6.82416 6.89183 7.39252 8.95768 Molecular weight = 325.19amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.003544 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.497409 B = 7897.837736 C = 8907.544759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.560 5.560 3 C 0.023 3.977 4 C 0.136 3.864 5 C -0.219 4.219 6 C 0.029 3.971 7 N -0.473 5.473 8 C 0.052 3.948 9 C 0.081 3.919 10 N -0.531 5.531 11 C 0.132 3.868 12 C -0.502 4.502 13 H 0.030 0.970 14 C 0.006 3.994 15 N -0.954 5.954 16 Si 0.940 3.060 17 H -0.265 1.265 18 H -0.288 1.288 19 H -0.242 1.242 20 C 0.083 3.917 21 C -0.096 4.096 22 C -0.141 4.141 23 C -0.131 4.131 24 C -0.166 4.166 25 S 0.146 5.854 26 H 0.035 0.965 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.036 0.964 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.186 0.814 35 H 0.086 0.914 36 H 0.120 0.880 37 H 0.025 0.975 38 H 0.049 0.951 39 H 0.264 0.736 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.093 0.907 45 H 0.038 0.962 46 H 0.067 0.933 47 H 0.055 0.945 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.430 19.396 -6.531 25.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.285 5.285 3 C -0.125 4.125 4 C 0.006 3.994 5 C -0.341 4.341 6 C -0.123 4.123 7 N -0.188 5.188 8 C -0.225 4.225 9 C -0.049 4.049 10 N -0.254 5.254 11 C 0.006 3.994 12 C -0.541 4.541 13 H 0.048 0.952 14 C -0.190 4.190 15 N -0.596 5.596 16 Si 0.763 3.237 17 H -0.190 1.190 18 H -0.214 1.214 19 H -0.165 1.165 20 C -0.045 4.045 21 C -0.097 4.097 22 C -0.198 4.198 23 C -0.189 4.189 24 C -0.222 4.222 25 S 0.401 5.599 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.202 0.798 35 H 0.105 0.895 36 H 0.137 0.863 37 H 0.043 0.957 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.111 0.889 45 H 0.057 0.943 46 H 0.085 0.915 47 H 0.074 0.926 48 H 0.091 0.909 49 H 0.087 0.913 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.458 18.097 -7.144 24.240 hybrid contribution 0.756 0.652 0.948 1.377 sum -13.702 18.749 -6.196 24.034 Atomic orbital electron populations 1.22424 0.85422 1.02948 1.01438 1.61952 1.09151 1.14788 1.42592 1.22428 1.00800 0.88001 1.01242 1.20406 0.86514 0.99656 0.92809 1.25953 1.01252 0.99022 1.07908 1.21987 0.85918 1.01816 1.02622 1.66578 1.24119 1.14178 1.13906 1.26942 1.00014 0.94819 1.00766 1.21713 0.90749 0.97776 0.94628 1.61932 1.39607 1.15894 1.07978 1.20998 0.92450 0.91074 0.94881 1.21243 1.27177 1.06190 0.99442 0.95216 1.25784 0.97108 0.95029 1.01103 1.70066 1.39896 1.12827 1.36806 0.85826 0.79739 0.77582 0.80538 1.19003 1.21391 1.16525 1.22003 0.95883 0.93332 0.93299 1.21130 0.96006 0.96682 0.95907 1.22545 0.99063 0.95188 1.03000 1.21770 0.98292 1.00757 0.98051 1.22729 1.00629 1.00769 0.98061 1.84062 0.99618 1.24231 1.51992 0.94651 0.90344 0.90964 0.92192 0.90598 0.94533 0.89321 0.91373 0.79755 0.89534 0.86328 0.95695 0.93387 0.92751 0.92711 0.93309 0.93058 0.93295 0.88865 0.94329 0.91450 0.92631 0.90947 0.91251 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.57 127.69 1.22 1.52 16 2 N -0.56 -9.30 5.01 -953.48 -4.78 -14.08 16 3 C 0.02 0.34 9.27 127.69 1.18 1.52 16 4 C 0.14 2.38 5.50 85.56 0.47 2.85 16 5 C -0.22 -5.01 5.50 24.64 0.14 -4.87 16 6 C 0.03 0.69 9.85 83.66 0.82 1.51 16 7 N -0.47 -13.46 7.23 -191.44 -1.38 -14.85 16 8 C 0.05 1.58 6.17 88.52 0.55 2.13 16 9 C 0.08 2.65 4.01 85.56 0.34 3.00 16 10 N -0.53 -21.60 4.61 -905.35 -4.17 -25.78 16 11 C 0.13 6.05 3.13 85.56 0.27 6.32 16 12 C -0.50 -28.78 8.93 25.60 0.23 -28.56 16 13 H 0.03 1.94 7.41 -2.91 -0.02 1.92 16 14 C 0.01 0.35 5.47 84.66 0.46 0.81 16 15 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 16 Si 0.94 43.37 27.57 68.60 1.89 45.26 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 19 H -0.24 -10.16 6.40 99.48 0.64 -9.52 16 20 C 0.08 3.27 4.77 86.30 0.41 3.68 16 21 C -0.10 -3.04 0.77 -52.18 -0.04 -3.08 16 22 C -0.14 -3.93 6.59 71.98 0.47 -3.46 16 23 C -0.13 -3.90 8.35 71.99 0.60 -3.30 16 24 C -0.17 -5.27 6.21 71.98 0.45 -4.82 16 25 S 0.15 4.00 23.18 -56.49 -1.31 2.69 16 26 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.08 0.80 8.12 -2.39 -0.02 0.78 16 28 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 29 H 0.06 1.04 6.32 -2.39 -0.02 1.02 16 30 H 0.08 0.96 8.12 -2.39 -0.02 0.94 16 31 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.09 1.51 8.06 -2.39 -0.02 1.49 16 33 H 0.07 1.01 8.12 -2.39 -0.02 0.99 16 34 H 0.19 3.44 8.06 -2.91 -0.02 3.42 16 35 H 0.09 2.70 7.70 -2.39 -0.02 2.68 16 36 H 0.12 3.60 2.39 -2.39 -0.01 3.59 16 37 H 0.03 1.15 6.51 -2.39 -0.02 1.13 16 38 H 0.05 2.10 2.86 -2.47 -0.01 2.09 16 39 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 40 H 0.05 2.16 7.80 -2.39 -0.02 2.14 16 41 H 0.05 2.27 6.32 -2.38 -0.02 2.26 16 42 H 0.05 1.47 7.82 -2.39 -0.02 1.45 16 43 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 44 H 0.09 2.67 2.54 -2.39 -0.01 2.67 16 45 H 0.04 1.27 8.12 -2.39 -0.02 1.25 16 46 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 48 H 0.07 2.33 3.29 -2.39 -0.01 2.32 16 49 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.05 1.83 6.66 -2.39 -0.02 1.82 16 Total: -1.00 -66.91 377.76 -1.01 -67.93 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.86 Total: 23.50 kcal Atomic # 6 Polarization: -32.32 SS G_CDS: 7.58 Total: -24.74 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -10.03 Total: -114.63 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.89 Total: 45.26 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -1.31 Total: 2.69 kcal Total: -66.91 -1.01 -67.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347779465.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.789 kcal (2) G-P(sol) polarization free energy of solvation -66.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.61 seconds