Wall clock time and date at job start Sat Apr 11 2020 01:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.52996 * 109.47343 * 240.00063 * 2 1 3 5 5 C 1.50703 * 109.46946 * 59.99764 * 4 2 1 6 6 H 1.07998 * 120.00275 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99908 * 180.02562 * 5 4 2 8 8 N 1.31508 * 119.99919 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99891 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46856 * 90.00518 * 9 7 5 11 11 H 1.48503 * 109.46872 * 210.00129 * 9 7 5 12 12 H 1.48501 * 109.47227 * 330.00538 * 9 7 5 13 13 C 1.53002 * 109.47454 * 120.00008 * 2 1 3 14 14 N 1.46906 * 109.47053 * 300.00316 * 13 2 1 15 15 C 1.46895 * 110.99789 * 179.97438 * 14 13 2 16 16 H 1.09001 * 109.47426 * 324.99890 * 15 14 13 17 17 C 1.50708 * 109.46830 * 204.99737 * 15 14 13 18 18 C 1.38235 * 120.00049 * 319.72761 * 17 15 14 19 19 C 1.38234 * 119.99885 * 179.78598 * 18 17 15 20 20 C 1.38235 * 119.99676 * 0.46581 * 19 18 17 21 21 C 1.38238 * 120.00525 * 359.76803 * 20 19 18 22 22 C 1.38231 * 119.99355 * 0.02562 * 21 20 19 23 23 C 1.50697 * 109.47232 * 85.00194 * 15 14 13 24 24 C 1.38604 * 120.80204 * 39.71828 * 23 15 14 25 25 N 1.32330 * 119.10219 * 179.72323 * 24 23 15 26 26 C 1.31794 * 120.82264 * 0.56613 * 25 24 23 27 27 N 1.31797 * 121.75217 * 359.70226 * 26 25 24 28 28 C 1.32332 * 120.81747 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47067 * 299.99853 * 1 2 3 30 30 H 1.09000 * 109.47312 * 59.99880 * 1 2 3 31 31 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47140 * 300.00226 * 3 2 1 34 34 H 1.09002 * 109.47045 * 60.00133 * 3 2 1 35 35 H 1.09001 * 109.47372 * 179.97438 * 4 2 1 36 36 H 1.09004 * 109.47108 * 299.99892 * 4 2 1 37 37 H 0.96997 * 120.00191 * 179.97438 * 8 7 5 38 38 H 1.08992 * 109.47056 * 179.97438 * 13 2 1 39 39 H 1.09004 * 109.47006 * 60.00102 * 13 2 1 40 40 H 1.00902 * 111.00068 * 56.04103 * 14 13 2 41 41 H 1.07999 * 120.00015 * 359.97438 * 18 17 15 42 42 H 1.07991 * 120.00018 * 180.25182 * 19 18 17 43 43 H 1.08001 * 120.00042 * 179.78605 * 20 19 18 44 44 H 1.07998 * 120.00429 * 180.02562 * 21 20 19 45 45 H 1.08007 * 119.99772 * 179.97438 * 22 21 20 46 46 H 1.08000 * 120.44453 * 0.02562 * 24 23 15 47 47 H 1.08000 * 119.12543 * 179.73135 * 26 25 24 48 48 H 1.07998 * 120.44695 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8704 -0.4821 -3.7320 8 7 1.4324 0.1381 -4.8057 9 14 2.9444 -2.0009 -3.9034 10 1 2.0859 -3.2117 -3.9483 11 1 3.7359 -1.9085 -5.1565 12 1 3.8651 -2.0897 -2.7416 13 6 2.0401 -0.7212 1.2492 14 7 1.5504 -0.0288 2.4487 15 6 2.0210 -0.6952 3.6703 16 1 2.0601 -1.7719 3.5048 17 6 1.0734 -0.3952 4.8031 18 6 0.5412 0.8731 4.9415 19 6 -0.3315 1.1471 5.9780 20 6 -0.6644 0.1554 6.8816 21 6 -0.1284 -1.1116 6.7460 22 6 0.7409 -1.3867 5.7071 23 6 3.3972 -0.1904 4.0196 24 6 3.7203 1.1494 3.8724 25 7 4.9373 1.5572 4.1946 26 6 5.8392 0.7054 4.6394 27 7 5.5695 -0.5762 4.7870 28 6 4.3724 -1.0557 4.4900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 -0.7208 -1.2494 36 1 1.6768 -1.7489 -1.2492 37 1 1.6667 -0.1933 -5.6867 38 1 3.1300 -0.7216 1.2489 39 1 1.6768 -1.7490 1.2492 40 1 0.5439 0.0413 2.4402 41 1 0.8048 1.6490 4.2381 42 1 -0.7504 2.1368 6.0837 43 1 -1.3435 0.3704 7.6934 44 1 -0.3888 -1.8865 7.4518 45 1 1.1600 -2.3765 5.6013 46 1 2.9871 1.8519 3.5045 47 1 6.8254 1.0673 4.8901 48 1 4.1578 -2.1069 4.6136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348214069.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:35:51 Heat of formation + Delta-G solvation = 64.939159 kcal Electronic energy + Delta-G solvation = -27553.464456 eV Core-core repulsion = 23993.883372 eV Total energy + Delta-G solvation = -3559.581085 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -41.21179 -39.60128 -37.83695 -35.56100 -33.73328 -32.58900 -31.49640 -31.16551 -30.85795 -27.77140 -26.49963 -26.41961 -25.12080 -24.46730 -23.24403 -22.75202 -21.86231 -20.78447 -18.10990 -17.69342 -17.60445 -17.16885 -16.77271 -15.77764 -15.41738 -15.34707 -14.84152 -14.58766 -14.28310 -13.93289 -13.74658 -13.72505 -13.66152 -13.41127 -13.12251 -13.06462 -12.73733 -12.60974 -12.25274 -11.94931 -11.51452 -11.28644 -11.12077 -11.09610 -10.94235 -10.89677 -10.84709 -10.54342 -10.39522 -9.88246 -9.71878 -9.60445 -9.31794 -9.27680 -9.15051 -8.98281 -8.92589 -8.51965 -8.45168 -6.02194 -3.98557 0.76194 1.04838 1.13227 1.17761 3.29958 3.38339 3.41462 3.51881 3.72028 3.94231 4.09193 4.21090 4.46185 4.48728 4.59881 4.65590 4.77971 4.78648 4.90874 4.98355 5.21905 5.26459 5.30728 5.34541 5.45349 5.48091 5.59031 5.70562 5.77939 5.80295 5.87783 6.04825 6.14413 6.20610 6.28486 6.31685 6.34094 6.34528 6.51674 6.62490 6.74417 6.75031 6.88219 6.97612 7.06146 7.10738 7.18408 7.27294 7.37993 7.47211 7.82454 8.01408 8.56872 9.03503 9.60906 11.10877 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012497 B = 0.003504 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.047498 B = 7988.853936 C = 9161.971098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.047 4.047 3 C -0.117 4.117 4 C -0.004 4.004 5 C -0.508 4.508 6 H 0.078 0.922 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.874 3.126 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.068 3.932 14 N -0.677 5.677 15 C 0.174 3.826 16 H 0.065 0.935 17 C -0.087 4.087 18 C -0.097 4.097 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.111 4.111 23 C -0.169 4.169 24 C 0.183 3.817 25 N -0.522 5.522 26 C 0.283 3.717 27 N -0.523 5.523 28 C 0.146 3.854 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.014 0.986 36 H 0.008 0.992 37 H 0.262 0.738 38 H 0.064 0.936 39 H 0.028 0.972 40 H 0.350 0.650 41 H 0.133 0.867 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.173 0.827 47 H 0.192 0.808 48 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.843 -1.346 24.834 24.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.047 4.047 3 C -0.174 4.174 4 C -0.041 4.041 5 C -0.545 4.545 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.544 5.544 9 Si 0.702 3.298 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.060 4.060 14 N -0.310 5.310 15 C 0.063 3.937 16 H 0.083 0.917 17 C -0.088 4.088 18 C -0.116 4.116 19 C -0.138 4.138 20 C -0.138 4.138 21 C -0.140 4.140 22 C -0.129 4.129 23 C -0.174 4.174 24 C 0.017 3.983 25 N -0.235 5.235 26 C -0.004 4.004 27 N -0.236 5.236 28 C -0.020 4.020 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.032 0.968 36 H 0.026 0.974 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.046 0.954 40 H 0.172 0.828 41 H 0.151 0.849 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.190 0.810 47 H 0.209 0.791 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.588 -0.550 24.856 24.869 hybrid contribution -0.742 -2.075 -0.527 2.266 sum -0.154 -2.626 24.329 24.471 Atomic orbital electron populations 1.21786 0.95457 1.00537 1.01024 1.20409 0.95110 0.96166 0.93063 1.21611 0.99638 0.95422 1.00766 1.19620 0.95984 0.95226 0.93313 1.21119 1.31571 1.13215 0.88644 0.90387 1.25010 0.95745 0.96713 0.96043 1.69900 1.46096 1.40575 0.97845 0.86866 0.81325 0.84017 0.77557 1.20494 1.21513 1.19201 1.22206 0.99736 0.94853 0.89237 1.60591 1.17149 1.53141 1.00158 1.19079 0.88856 0.96803 0.88984 0.91728 1.19796 0.97958 0.94391 0.96623 1.21125 0.96285 0.96390 0.97760 1.21204 0.98149 0.99407 0.95082 1.21189 0.99929 0.93470 0.99226 1.21100 0.97708 0.96986 0.98191 1.21031 0.98185 0.98874 0.94848 1.21507 0.97376 0.96570 1.01935 1.23146 0.92502 0.93963 0.88678 1.68498 1.02817 1.39804 1.12394 1.24933 0.99011 0.85145 0.91360 1.68407 1.21044 1.16747 1.17421 1.23035 0.87803 1.00257 0.90860 0.94557 0.91068 0.94100 0.94317 0.92009 0.93711 0.96822 0.97410 0.92860 0.91740 0.95382 0.82797 0.84937 0.85917 0.86227 0.86118 0.86140 0.80982 0.79130 0.82164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 7.89 37.16 0.29 -1.94 16 2 C -0.05 -0.85 0.60 -154.51 -0.09 -0.94 16 3 C -0.12 -2.11 8.06 37.16 0.30 -1.81 16 4 C 0.00 -0.08 3.11 -27.88 -0.09 -0.17 16 5 C -0.51 -13.75 8.20 -34.44 -0.28 -14.03 16 6 H 0.08 2.25 5.92 -52.49 -0.31 1.94 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 9 Si 0.87 21.65 27.47 -169.99 -4.67 16.98 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 13 C 0.07 1.01 4.44 -3.82 -0.02 0.99 16 14 N -0.68 -7.89 4.24 -109.18 -0.46 -8.35 16 15 C 0.17 1.77 2.45 -70.02 -0.17 1.60 16 16 H 0.06 0.64 7.56 -51.93 -0.39 0.24 16 17 C -0.09 -0.83 4.69 -104.62 -0.49 -1.32 16 18 C -0.10 -0.91 8.86 -39.58 -0.35 -1.27 16 19 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 20 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 21 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 22 C -0.11 -0.97 9.67 -39.59 -0.38 -1.36 16 23 C -0.17 -1.89 4.72 -104.36 -0.49 -2.38 16 24 C 0.18 2.24 10.47 -17.20 -0.18 2.06 16 25 N -0.52 -6.79 10.44 -14.58 -0.15 -6.94 16 26 C 0.28 3.35 12.29 -92.15 -1.13 2.21 16 27 N -0.52 -6.43 10.44 -14.58 -0.15 -6.58 16 28 C 0.15 1.62 10.97 -17.20 -0.19 1.44 16 29 H 0.04 0.51 6.57 -51.93 -0.34 0.17 16 30 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 1.27 6.62 -51.93 -0.34 0.92 16 34 H 0.04 0.69 7.60 -51.93 -0.39 0.30 16 35 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 36 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.06 1.03 8.00 -51.93 -0.42 0.61 16 39 H 0.03 0.41 8.05 -51.93 -0.42 -0.01 16 40 H 0.35 4.00 6.04 -39.29 -0.24 3.76 16 41 H 0.13 1.21 7.39 -52.49 -0.39 0.83 16 42 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.12 0.87 8.04 -52.48 -0.42 0.45 16 46 H 0.17 1.99 7.46 -52.49 -0.39 1.60 16 47 H 0.19 1.65 8.06 -52.49 -0.42 1.23 16 48 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 384.86 15.07 5.80 5.80 Total: -1.00 -31.08 384.86 -10.72 -41.80 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.29 Total: 3.38 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -4.57 Total: -19.34 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.01 Total: -48.62 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.08 -10.72 -41.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348214069.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.738 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds