Wall clock time and date at job start Sat Apr 11 2020 01:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.52996 * 109.47343 * 240.00063 * 2 1 3 5 5 C 1.50703 * 109.46946 * 59.99764 * 4 2 1 6 6 H 1.07998 * 120.00275 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99908 * 180.02562 * 5 4 2 8 8 N 1.31508 * 119.99919 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99891 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46856 * 90.00518 * 9 7 5 11 11 H 1.48503 * 109.46872 * 210.00129 * 9 7 5 12 12 H 1.48501 * 109.47227 * 330.00538 * 9 7 5 13 13 C 1.53002 * 109.47454 * 120.00008 * 2 1 3 14 14 N 1.46906 * 109.47053 * 300.00316 * 13 2 1 15 15 C 1.46895 * 110.99789 * 179.97438 * 14 13 2 16 16 H 1.09001 * 109.47426 * 324.99890 * 15 14 13 17 17 C 1.50708 * 109.46830 * 204.99737 * 15 14 13 18 18 C 1.38235 * 120.00049 * 319.72761 * 17 15 14 19 19 C 1.38234 * 119.99885 * 179.78598 * 18 17 15 20 20 C 1.38235 * 119.99676 * 0.46581 * 19 18 17 21 21 C 1.38238 * 120.00525 * 359.76803 * 20 19 18 22 22 C 1.38231 * 119.99355 * 0.02562 * 21 20 19 23 23 C 1.50697 * 109.47232 * 85.00194 * 15 14 13 24 24 C 1.38604 * 120.80204 * 39.71828 * 23 15 14 25 25 N 1.32330 * 119.10219 * 179.72323 * 24 23 15 26 26 C 1.31794 * 120.82264 * 0.56613 * 25 24 23 27 27 N 1.31797 * 121.75217 * 359.70226 * 26 25 24 28 28 C 1.32332 * 120.81747 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47067 * 299.99853 * 1 2 3 30 30 H 1.09000 * 109.47312 * 59.99880 * 1 2 3 31 31 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47140 * 300.00226 * 3 2 1 34 34 H 1.09002 * 109.47045 * 60.00133 * 3 2 1 35 35 H 1.09001 * 109.47372 * 179.97438 * 4 2 1 36 36 H 1.09004 * 109.47108 * 299.99892 * 4 2 1 37 37 H 0.96997 * 120.00191 * 179.97438 * 8 7 5 38 38 H 1.08992 * 109.47056 * 179.97438 * 13 2 1 39 39 H 1.09004 * 109.47006 * 60.00102 * 13 2 1 40 40 H 1.00902 * 111.00068 * 56.04103 * 14 13 2 41 41 H 1.07999 * 120.00015 * 359.97438 * 18 17 15 42 42 H 1.07991 * 120.00018 * 180.25182 * 19 18 17 43 43 H 1.08001 * 120.00042 * 179.78605 * 20 19 18 44 44 H 1.07998 * 120.00429 * 180.02562 * 21 20 19 45 45 H 1.08007 * 119.99772 * 179.97438 * 22 21 20 46 46 H 1.08000 * 120.44453 * 0.02562 * 24 23 15 47 47 H 1.08000 * 119.12543 * 179.73135 * 26 25 24 48 48 H 1.07998 * 120.44695 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8704 -0.4821 -3.7320 8 7 1.4324 0.1381 -4.8057 9 14 2.9444 -2.0009 -3.9034 10 1 2.0859 -3.2117 -3.9483 11 1 3.7359 -1.9085 -5.1565 12 1 3.8651 -2.0897 -2.7416 13 6 2.0401 -0.7212 1.2492 14 7 1.5504 -0.0288 2.4487 15 6 2.0210 -0.6952 3.6703 16 1 2.0601 -1.7719 3.5048 17 6 1.0734 -0.3952 4.8031 18 6 0.5412 0.8731 4.9415 19 6 -0.3315 1.1471 5.9780 20 6 -0.6644 0.1554 6.8816 21 6 -0.1284 -1.1116 6.7460 22 6 0.7409 -1.3867 5.7071 23 6 3.3972 -0.1904 4.0196 24 6 3.7203 1.1494 3.8724 25 7 4.9373 1.5572 4.1946 26 6 5.8392 0.7054 4.6394 27 7 5.5695 -0.5762 4.7870 28 6 4.3724 -1.0557 4.4900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 -0.7208 -1.2494 36 1 1.6768 -1.7489 -1.2492 37 1 1.6667 -0.1933 -5.6867 38 1 3.1300 -0.7216 1.2489 39 1 1.6768 -1.7490 1.2492 40 1 0.5439 0.0413 2.4402 41 1 0.8048 1.6490 4.2381 42 1 -0.7504 2.1368 6.0837 43 1 -1.3435 0.3704 7.6934 44 1 -0.3888 -1.8865 7.4518 45 1 1.1600 -2.3765 5.6013 46 1 2.9871 1.8519 3.5045 47 1 6.8254 1.0673 4.8901 48 1 4.1578 -2.1069 4.6136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348214069.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:35:50 Heat of formation + Delta-G solvation = 48.776847 kcal Electronic energy + Delta-G solvation = -27554.165307 eV Core-core repulsion = 23993.883372 eV Total energy + Delta-G solvation = -3560.281935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.185 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.06461 -40.32035 -39.08540 -36.65519 -34.62060 -34.51385 -32.65859 -31.80164 -31.61917 -29.58631 -27.90658 -27.48597 -26.25564 -25.43258 -24.29572 -23.66169 -23.07180 -21.56550 -19.54294 -18.87434 -18.51501 -18.48821 -17.89912 -16.58151 -16.52922 -16.22237 -16.00580 -15.62765 -15.58350 -15.21306 -15.02288 -14.59821 -14.53301 -14.43816 -14.22115 -14.12926 -13.98763 -13.83442 -13.54506 -13.28049 -12.83514 -12.73138 -12.49113 -12.24128 -12.20987 -12.07186 -11.85636 -11.81489 -11.75851 -11.72652 -11.36893 -11.03263 -10.84700 -10.70488 -10.34374 -10.17329 -9.76819 -9.62681 -9.42314 -8.22326 -6.22218 -0.06776 0.17217 0.47542 0.55620 1.33543 1.36422 1.46510 2.38236 2.81432 2.91556 3.03224 3.12932 3.30820 3.37213 3.71567 3.80161 3.91208 4.02810 4.12337 4.17141 4.22098 4.22863 4.33928 4.35399 4.50200 4.57787 4.67060 4.74477 4.75528 4.82332 4.90448 4.98156 5.05367 5.09535 5.10737 5.19905 5.22499 5.38381 5.45388 5.48684 5.52910 5.58967 5.60642 5.66286 5.68117 5.76729 5.82891 6.01065 6.05148 6.15392 6.40846 6.46952 6.85508 7.14282 7.40292 8.93909 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012497 B = 0.003504 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.047498 B = 7988.853936 C = 9161.971098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.045 4.045 3 C -0.107 4.107 4 C -0.003 4.003 5 C -0.502 4.502 6 H 0.046 0.954 7 C 0.002 3.998 8 N -0.954 5.954 9 Si 0.938 3.062 10 H -0.268 1.268 11 H -0.290 1.290 12 H -0.253 1.253 13 C 0.084 3.916 14 N -0.673 5.673 15 C 0.183 3.817 16 H 0.077 0.923 17 C -0.096 4.096 18 C -0.109 4.109 19 C -0.131 4.131 20 C -0.125 4.125 21 C -0.128 4.128 22 C -0.118 4.118 23 C -0.168 4.168 24 C 0.170 3.830 25 N -0.543 5.543 26 C 0.275 3.725 27 N -0.537 5.537 28 C 0.142 3.858 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.029 0.971 33 H 0.026 0.974 34 H 0.072 0.928 35 H 0.007 0.993 36 H 0.012 0.988 37 H 0.262 0.738 38 H 0.055 0.945 39 H 0.036 0.964 40 H 0.355 0.645 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.136 0.864 46 H 0.173 0.827 47 H 0.215 0.785 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.735 -3.188 27.548 27.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.046 4.046 3 C -0.165 4.165 4 C -0.041 4.041 5 C -0.540 4.540 6 H 0.064 0.936 7 C -0.194 4.194 8 N -0.596 5.596 9 Si 0.763 3.237 10 H -0.194 1.194 11 H -0.216 1.216 12 H -0.176 1.176 13 C -0.045 4.045 14 N -0.307 5.307 15 C 0.072 3.928 16 H 0.095 0.905 17 C -0.096 4.096 18 C -0.127 4.127 19 C -0.149 4.149 20 C -0.143 4.143 21 C -0.146 4.146 22 C -0.136 4.136 23 C -0.173 4.173 24 C 0.005 3.995 25 N -0.257 5.257 26 C -0.013 4.013 27 N -0.250 5.250 28 C -0.024 4.024 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.025 0.975 36 H 0.031 0.969 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.177 0.823 41 H 0.148 0.852 42 H 0.153 0.847 43 H 0.156 0.844 44 H 0.158 0.842 45 H 0.154 0.846 46 H 0.191 0.809 47 H 0.231 0.769 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 0.688 -2.391 27.599 27.711 hybrid contribution -0.838 -1.409 -1.295 2.089 sum -0.150 -3.800 26.304 26.578 Atomic orbital electron populations 1.21689 0.94685 1.00812 1.00894 1.20317 0.95692 0.95736 0.92844 1.21502 0.98947 0.95664 1.00352 1.19590 0.95395 0.95400 0.93671 1.21436 1.30041 1.12086 0.90433 0.93596 1.25899 0.97538 1.00124 0.95850 1.70056 1.48332 1.42794 0.98436 0.85838 0.79763 0.80301 0.77792 1.19360 1.21623 1.17637 1.21860 0.99046 0.94863 0.88708 1.60446 1.17406 1.53064 0.99751 1.19024 0.88400 0.97103 0.88301 0.90550 1.19738 0.98290 0.94756 0.96818 1.21202 0.96841 0.96462 0.98223 1.21431 0.98103 1.00303 0.95025 1.21494 0.99940 0.93405 0.99486 1.21403 0.97300 0.97554 0.98344 1.21267 0.98226 0.99398 0.94725 1.21580 0.97882 0.96104 1.01709 1.23259 0.92505 0.94690 0.89040 1.68505 1.03408 1.40540 1.13262 1.25428 0.99781 0.85130 0.90947 1.68470 1.21708 1.16915 1.17939 1.23499 0.87346 1.01464 0.90057 0.91231 0.94642 0.93571 0.95153 0.95464 0.90948 0.97478 0.96922 0.92932 0.92619 0.94535 0.82276 0.85232 0.84742 0.84414 0.84216 0.84620 0.80950 0.76885 0.79623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.11 7.89 71.98 0.57 -3.54 16 2 C -0.05 -1.60 0.60 -52.18 -0.03 -1.63 16 3 C -0.11 -3.87 8.06 71.98 0.58 -3.29 16 4 C 0.00 -0.12 3.11 29.85 0.09 -0.03 16 5 C -0.50 -27.86 8.20 25.60 0.21 -27.65 16 6 H 0.05 2.79 5.92 -2.91 -0.02 2.77 16 7 C 0.00 0.09 5.47 84.66 0.46 0.56 16 8 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 9 Si 0.94 44.69 27.47 68.60 1.88 46.57 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 12 H -0.25 -11.32 6.54 99.48 0.65 -10.66 16 13 C 0.08 2.29 4.44 86.30 0.38 2.68 16 14 N -0.67 -14.04 4.24 -499.35 -2.11 -16.16 16 15 C 0.18 3.24 2.45 43.43 0.11 3.34 16 16 H 0.08 1.22 7.56 -2.39 -0.02 1.21 16 17 C -0.10 -1.59 4.69 -19.86 -0.09 -1.68 16 18 C -0.11 -1.84 8.86 22.27 0.20 -1.65 16 19 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 20 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 21 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 22 C -0.12 -1.72 9.67 22.27 0.22 -1.50 16 23 C -0.17 -3.41 4.72 -19.69 -0.09 -3.50 16 24 C 0.17 3.97 10.47 84.71 0.89 4.86 16 25 N -0.54 -13.66 10.44 -200.04 -2.09 -15.75 16 26 C 0.27 6.14 12.29 180.88 2.22 8.36 16 27 N -0.54 -12.25 10.44 -200.05 -2.09 -14.33 16 28 C 0.14 2.82 10.97 84.70 0.93 3.75 16 29 H 0.07 1.83 6.57 -2.39 -0.02 1.81 16 30 H 0.03 1.42 6.62 -2.39 -0.02 1.40 16 31 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.03 1.14 6.62 -2.39 -0.02 1.12 16 34 H 0.07 2.17 7.60 -2.39 -0.02 2.15 16 35 H 0.01 0.32 7.20 -2.39 -0.02 0.31 16 36 H 0.01 0.56 7.57 -2.38 -0.02 0.54 16 37 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.06 1.65 8.00 -2.39 -0.02 1.63 16 39 H 0.04 0.95 8.05 -2.38 -0.02 0.93 16 40 H 0.36 7.07 6.04 -89.69 -0.54 6.53 16 41 H 0.13 2.19 7.39 -2.91 -0.02 2.16 16 42 H 0.13 1.61 8.06 -2.92 -0.02 1.58 16 43 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 44 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 45 H 0.14 1.49 8.04 -2.91 -0.02 1.47 16 46 H 0.17 3.84 7.46 -2.91 -0.02 3.82 16 47 H 0.21 3.41 8.06 -2.91 -0.02 3.38 16 48 H 0.19 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -68.64 384.86 3.56 -65.08 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.36 Total: 19.87 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 7.31 Total: -25.67 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -5.99 Total: -105.85 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -68.64 3.56 -65.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348214069.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.856 kcal (2) G-P(sol) polarization free energy of solvation -68.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds