Wall clock time and date at job start Sat Apr 11 2020 01:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46947 * 2 1 4 4 C 1.50706 * 109.47238 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99507 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00020 * 180.02562 * 4 3 2 7 7 C 1.46496 * 119.99544 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.46760 * 180.02562 * 7 6 4 9 9 O 1.21276 * 120.00438 * 0.02562 * 8 7 6 10 10 N 1.34786 * 119.99895 * 179.97438 * 8 7 6 11 11 C 1.48137 * 127.83912 * 359.68455 * 10 8 7 12 12 C 1.54788 * 104.41916 * 140.36406 * 11 10 8 13 13 H 1.08999 * 110.20018 * 142.94432 * 12 11 10 14 14 C 1.53007 * 110.61395 * 265.17767 * 12 11 10 15 15 C 1.54280 * 104.92290 * 24.16453 * 12 11 10 16 16 C 1.53000 * 110.34415 * 240.93826 * 15 12 11 17 17 C 1.52995 * 110.34548 * 118.67512 * 15 12 11 18 18 N 1.46498 * 109.47225 * 183.01107 * 17 15 12 19 19 C 1.36945 * 119.99773 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00084 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99670 * 179.97438 * 19 18 17 22 22 N 1.31623 * 120.00101 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99821 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47156 * 60.00106 * 23 21 19 25 25 H 1.48505 * 109.46918 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47110 * 300.00050 * 23 21 19 27 27 C 1.48145 * 127.83634 * 179.97438 * 10 8 7 28 28 H 1.08992 * 109.47554 * 299.99696 * 1 2 3 29 29 H 1.08996 * 109.47261 * 60.00229 * 1 2 3 30 30 H 1.09000 * 109.46870 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47372 * 240.00310 * 2 1 3 32 32 H 1.09004 * 109.47108 * 120.00054 * 2 1 3 33 33 H 1.09001 * 109.46832 * 59.99979 * 3 2 1 34 34 H 1.09000 * 109.47611 * 300.00276 * 3 2 1 35 35 H 0.96994 * 119.99756 * 0.02562 * 6 4 3 36 36 H 1.08996 * 109.47366 * 299.99598 * 7 6 4 37 37 H 1.08992 * 109.47635 * 60.00246 * 7 6 4 38 38 H 1.08997 * 110.41036 * 259.19412 * 11 10 8 39 39 H 1.09007 * 110.40699 * 21.62918 * 11 10 8 40 40 H 1.09004 * 109.46915 * 175.64838 * 14 12 11 41 41 H 1.09000 * 109.47035 * 295.64693 * 14 12 11 42 42 H 1.08992 * 109.46870 * 55.64741 * 14 12 11 43 43 H 1.09003 * 109.47115 * 176.98354 * 16 15 12 44 44 H 1.08991 * 109.47184 * 296.98508 * 16 15 12 45 45 H 1.08997 * 109.47237 * 56.99046 * 16 15 12 46 46 H 1.08999 * 109.47202 * 303.01375 * 17 15 12 47 47 H 1.09003 * 109.46784 * 63.01437 * 17 15 12 48 48 H 0.96998 * 119.99936 * 0.02562 * 18 17 15 49 49 H 0.96997 * 119.99612 * 180.02562 * 22 21 19 50 50 H 1.08999 * 110.40772 * 338.37338 * 27 10 8 51 51 H 1.08998 * 110.40603 * 100.68749 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1533 0.3922 0.0006 6 7 4.2208 2.6098 0.0013 7 6 5.6857 2.6097 0.0013 8 6 6.1880 4.0306 0.0027 9 8 5.4000 4.9524 0.0040 10 7 7.5132 4.2769 0.0035 11 6 8.6204 3.2928 0.0097 12 6 9.6769 3.8952 -0.9479 13 1 10.6811 3.6961 -0.5736 14 6 9.5132 3.3248 -2.3582 15 6 9.3950 5.4121 -0.9468 16 6 9.0343 5.8871 -2.3558 17 6 10.6101 6.1785 -0.4206 18 7 10.2968 7.6083 -0.3600 19 6 11.2393 8.4976 0.0831 20 1 12.2136 8.1449 0.3875 21 6 10.9426 9.8524 0.1400 22 7 9.7553 10.2823 -0.2315 23 14 12.2284 11.0655 0.7438 24 1 13.4245 10.9967 -0.1336 25 1 11.6670 12.4399 0.7094 26 1 12.6157 10.7242 2.1362 27 6 8.1928 5.5933 0.0044 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6765 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.7357 3.4497 0.0017 36 1 6.0491 2.0955 0.8910 37 1 6.0492 2.0964 -0.8888 38 1 9.0303 3.1880 1.0142 39 1 8.2741 2.3287 -0.3630 40 1 10.2137 3.8171 -3.0328 41 1 9.7154 2.2539 -2.3427 42 1 8.4940 3.4972 -2.7037 43 1 8.7862 6.9481 -2.3291 44 1 9.8832 5.7291 -3.0209 45 1 8.1765 5.3225 -2.7211 46 1 10.8622 5.8192 0.5771 47 1 11.4567 6.0201 -1.0886 48 1 9.4218 7.9251 -0.6338 49 1 9.5482 11.2291 -0.1920 50 1 7.5236 6.3668 -0.3722 51 1 8.5350 5.8437 1.0085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180787719.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:32:06 Heat of formation + Delta-G solvation = -95.146461 kcal Electronic energy + Delta-G solvation = -28225.540150 eV Core-core repulsion = 24351.708312 eV Total energy + Delta-G solvation = -3873.831838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.67587 -40.75688 -39.50573 -36.51542 -35.64618 -35.22432 -34.63633 -33.06532 -31.34495 -30.35767 -28.74208 -27.93167 -26.67536 -26.39703 -24.94251 -22.81248 -22.45727 -21.36661 -20.59764 -19.87832 -19.16248 -18.43332 -17.63947 -17.48792 -17.00328 -16.92737 -16.51522 -16.04283 -15.89219 -15.56465 -15.35927 -15.08205 -14.76364 -14.73849 -14.73204 -14.22412 -13.95396 -13.90522 -13.71523 -13.43178 -13.15346 -13.03903 -12.83880 -12.81580 -12.65957 -12.59272 -12.47690 -12.41358 -12.13507 -12.02023 -11.95762 -11.61173 -11.50740 -11.39061 -11.22541 -11.11936 -10.99337 -10.90588 -10.27899 -9.82129 -8.96609 -7.93030 -5.21258 1.38998 1.47310 1.50095 1.56184 1.58742 1.59259 2.30661 2.56949 3.23216 3.40546 3.54432 3.60716 3.78016 3.79971 4.02620 4.12537 4.17878 4.23217 4.26135 4.28475 4.28619 4.34642 4.54328 4.59080 4.63493 4.69775 4.71017 4.77688 4.78194 4.83829 4.89322 4.92867 5.01655 5.02588 5.07213 5.13819 5.19661 5.26529 5.27531 5.29439 5.37990 5.43767 5.48354 5.51920 5.59614 6.28671 6.41143 6.45945 6.90481 7.14325 7.35383 8.12765 8.34346 9.30301 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.021930 B = 0.002248 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.464071 B =12449.879688 C =13255.800715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.136 4.136 4 C 0.513 3.487 5 O -0.579 6.579 6 N -0.720 5.720 7 C 0.113 3.887 8 C 0.524 3.476 9 O -0.580 6.580 10 N -0.612 5.612 11 C 0.100 3.900 12 C -0.090 4.090 13 H 0.105 0.895 14 C -0.139 4.139 15 C -0.067 4.067 16 C -0.123 4.123 17 C 0.166 3.834 18 N -0.743 5.743 19 C -0.241 4.241 20 H 0.078 0.922 21 C -0.078 4.078 22 N -0.971 5.971 23 Si 0.972 3.028 24 H -0.277 1.277 25 H -0.299 1.299 26 H -0.278 1.278 27 C 0.126 3.874 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.415 0.585 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.049 0.951 43 H 0.027 0.973 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.027 0.973 47 H 0.029 0.971 48 H 0.373 0.627 49 H 0.249 0.751 50 H 0.049 0.951 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.537 -23.420 -1.429 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.175 4.175 4 C 0.302 3.698 5 O -0.459 6.459 6 N -0.375 5.375 7 C -0.014 4.014 8 C 0.314 3.686 9 O -0.461 6.461 10 N -0.345 5.345 11 C -0.022 4.022 12 C -0.109 4.109 13 H 0.123 0.877 14 C -0.196 4.196 15 C -0.068 4.068 16 C -0.180 4.180 17 C 0.040 3.960 18 N -0.386 5.386 19 C -0.373 4.373 20 H 0.096 0.904 21 C -0.270 4.270 22 N -0.622 5.622 23 Si 0.802 3.198 24 H -0.203 1.203 25 H -0.226 1.226 26 H -0.204 1.204 27 C 0.003 3.997 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.253 0.747 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.110 0.890 39 H 0.129 0.871 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.068 0.932 43 H 0.046 0.954 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.045 0.955 47 H 0.046 0.954 48 H 0.206 0.794 49 H 0.058 0.942 50 H 0.068 0.932 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.452 -23.661 -1.362 26.322 hybrid contribution 0.260 2.044 0.279 2.079 sum -11.192 -21.617 -1.083 24.367 Atomic orbital electron populations 1.21767 0.93880 1.02420 1.02624 1.21257 0.96584 0.94444 1.02330 1.21786 0.88643 1.00591 1.06514 1.21359 0.91765 0.82304 0.74352 1.90686 1.71487 1.32357 1.51338 1.45886 1.05977 1.10249 1.75385 1.20998 0.82510 0.92027 1.05829 1.20554 0.80753 0.91667 0.75642 1.90704 1.55179 1.47557 1.52642 1.48956 1.04734 1.09479 1.71295 1.22941 0.85616 0.92600 1.01021 1.22220 1.00265 0.91222 0.97228 0.87655 1.21889 1.01672 1.01411 0.94672 1.21574 0.93741 0.96405 0.95111 1.21776 1.01330 0.99515 0.95415 1.20900 0.94580 0.83136 0.97392 1.42604 1.14981 1.02240 1.78784 1.19613 0.95085 0.88569 1.34063 0.90401 1.25557 0.98860 0.98984 1.03577 1.69824 1.22343 1.14021 1.56000 0.85227 0.78428 0.77817 0.78375 1.20315 1.22562 1.20431 1.22201 0.93043 0.85087 0.99376 0.91876 0.91861 0.92176 0.92484 0.92518 0.86850 0.86806 0.74669 0.87230 0.87081 0.89013 0.87051 0.92209 0.90287 0.93229 0.95425 0.91444 0.92089 0.95491 0.95358 0.79430 0.94192 0.93183 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.65 16 2 C -0.11 -1.44 5.22 30.59 0.16 -1.28 16 3 C -0.14 -1.65 5.70 29.85 0.17 -1.48 16 4 C 0.51 9.88 7.83 87.66 0.69 10.56 16 5 O -0.58 -15.01 15.98 -3.02 -0.05 -15.06 16 6 N -0.72 -13.71 5.53 -466.80 -2.58 -16.29 16 7 C 0.11 2.17 5.13 85.63 0.44 2.61 16 8 C 0.52 13.71 7.98 87.66 0.70 14.41 16 9 O -0.58 -19.91 15.93 -3.02 -0.05 -19.96 16 10 N -0.61 -15.34 3.31 -807.23 -2.67 -18.01 16 11 C 0.10 1.69 6.49 86.67 0.56 2.25 16 12 C -0.09 -1.74 3.30 -9.75 -0.03 -1.77 16 13 H 0.11 1.79 7.71 -2.39 -0.02 1.78 16 14 C -0.14 -2.29 7.95 71.98 0.57 -1.72 16 15 C -0.07 -1.96 0.73 -51.29 -0.04 -2.00 16 16 C -0.12 -3.81 7.08 71.98 0.51 -3.30 16 17 C 0.17 6.14 4.85 86.38 0.42 6.56 16 18 N -0.74 -36.75 5.12 -343.46 -1.76 -38.51 16 19 C -0.24 -13.28 9.99 84.03 0.84 -12.44 16 20 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 21 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 22 N -0.97 -60.16 13.06 21.65 0.28 -59.88 16 23 Si 0.97 46.25 29.55 68.60 2.03 48.28 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 25 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 27 C 0.13 4.12 5.54 86.53 0.48 4.60 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 32 H 0.06 0.89 8.10 -2.38 -0.02 0.87 16 33 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.42 7.79 7.44 -92.71 -0.69 7.10 16 36 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.11 1.85 7.96 -2.39 -0.02 1.84 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.11 1.25 7.05 -2.38 -0.02 1.23 16 40 H 0.06 1.06 6.89 -2.38 -0.02 1.04 16 41 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.05 0.90 6.72 -2.39 -0.02 0.88 16 43 H 0.03 1.05 7.01 -2.39 -0.02 1.03 16 44 H 0.07 1.92 6.98 -2.39 -0.02 1.91 16 45 H 0.06 1.70 6.62 -2.39 -0.02 1.69 16 46 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.37 20.09 6.28 -92.71 -0.58 19.51 16 49 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 50 H 0.05 1.99 7.60 -2.39 -0.02 1.97 16 51 H 0.06 2.26 7.87 -2.39 -0.02 2.24 16 Total: -1.00 -74.52 402.89 1.50 -73.02 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: -0.35 Total: 34.07 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 6.65 Total: 12.34 kcal Atomic # 7 Polarization: -125.97 SS G_CDS: -6.73 Total: -132.70 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -0.10 Total: -35.02 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -74.52 1.50 -73.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180787719.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.122 kcal (2) G-P(sol) polarization free energy of solvation -74.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds