Wall clock time and date at job start Sat Apr 11 2020 01:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47104 * 2 1 4 4 H 1.09001 * 109.46950 * 55.01033 * 3 2 1 5 5 N 1.46496 * 109.47575 * 295.00182 * 3 2 1 6 6 C 1.34777 * 119.99614 * 84.99689 * 5 3 2 7 7 C 1.50706 * 120.00110 * 180.02562 * 6 5 3 8 8 O 1.21283 * 120.00387 * 0.02562 * 6 5 3 9 9 C 1.50706 * 109.47023 * 175.00307 * 3 2 1 10 10 O 1.21279 * 119.99987 * 119.99776 * 9 3 2 11 11 N 1.34780 * 119.99731 * 300.00541 * 9 3 2 12 12 C 1.48140 * 127.84090 * 0.02562 * 11 9 3 13 13 C 1.54387 * 104.61737 * 219.58873 * 12 11 9 14 14 H 1.09003 * 110.34375 * 95.00405 * 13 12 11 15 15 C 1.53002 * 110.34230 * 217.15788 * 13 12 11 16 16 C 1.54287 * 104.96308 * 336.13300 * 13 12 11 17 17 C 1.52998 * 110.34379 * 241.12952 * 16 13 12 18 18 C 1.53002 * 110.34210 * 118.97255 * 16 13 12 19 19 N 1.46499 * 109.46764 * 180.02562 * 18 16 13 20 20 C 1.36937 * 119.99909 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99727 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00141 * 179.97438 * 20 19 18 23 23 N 1.31616 * 120.00128 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99820 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47465 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47090 * 120.00011 * 24 22 20 27 27 H 1.48500 * 109.46785 * 239.99878 * 24 22 20 28 28 C 1.48147 * 127.83060 * 179.70610 * 11 9 3 29 29 H 1.09007 * 109.46395 * 299.99527 * 1 2 3 30 30 H 1.08996 * 109.47009 * 59.99233 * 1 2 3 31 31 H 1.08999 * 109.47039 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46395 * 240.00472 * 2 1 3 33 33 H 1.08997 * 109.47491 * 120.00982 * 2 1 3 34 34 H 0.96996 * 120.00499 * 265.00266 * 5 3 2 35 35 H 1.09001 * 109.46953 * 0.02562 * 7 6 5 36 36 H 1.09000 * 109.47318 * 119.99741 * 7 6 5 37 37 H 1.09000 * 109.47161 * 240.00372 * 7 6 5 38 38 H 1.09005 * 110.40726 * 338.37157 * 12 11 9 39 39 H 1.09001 * 110.40615 * 100.68524 * 12 11 9 40 40 H 1.08994 * 109.47425 * 58.54508 * 15 13 12 41 41 H 1.09002 * 109.47187 * 178.55081 * 15 13 12 42 42 H 1.09003 * 109.47236 * 298.54310 * 15 13 12 43 43 H 1.09004 * 109.46806 * 59.99984 * 17 16 13 44 44 H 1.08998 * 109.46907 * 179.97438 * 17 16 13 45 45 H 1.08998 * 109.47348 * 299.99886 * 17 16 13 46 46 H 1.08995 * 109.47154 * 300.00308 * 18 16 13 47 47 H 1.09000 * 109.46578 * 60.00607 * 18 16 13 48 48 H 0.96999 * 120.00689 * 0.02562 * 19 18 16 49 49 H 0.96993 * 120.00140 * 179.97438 * 23 22 20 50 50 H 1.08997 * 110.40594 * 259.19070 * 28 11 9 51 51 H 1.08995 * 110.41339 * 21.62882 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 7 1.6525 2.0976 -1.2517 6 6 0.4351 2.6644 -1.3667 7 6 0.0361 3.3379 -2.6546 8 8 -0.3393 2.6327 -0.4339 9 6 3.5420 1.4443 0.1238 10 8 4.2217 1.9435 -0.7478 11 7 4.1298 0.8909 1.2030 12 6 3.4745 0.2385 2.3604 13 6 4.2951 0.7001 3.5839 14 1 3.8304 1.5717 4.0450 15 6 4.4184 -0.4362 4.6010 16 6 5.6821 1.0685 3.0174 17 6 6.7638 0.1855 3.6426 18 6 5.9871 2.5454 3.2761 19 7 7.3064 2.8743 2.7305 20 6 7.7964 4.1479 2.8448 21 1 7.2104 4.9097 3.3375 22 6 9.0466 4.4595 2.3284 23 7 9.7613 3.5308 1.7294 24 14 9.7153 6.1967 2.4850 25 1 8.7260 7.0457 3.1962 26 1 10.9865 6.1705 3.2521 27 1 9.9651 6.7547 1.1317 28 6 5.5783 0.7915 1.4978 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5140 0.8899 34 1 2.2719 2.1233 -1.9977 35 1 0.8545 3.2658 -3.3710 36 1 -0.8476 2.8472 -3.0626 37 1 -0.1872 4.3872 -2.4619 38 1 2.4403 0.5713 2.4489 39 1 3.5167 -0.8460 2.2594 40 1 4.8958 -1.2954 4.1300 41 1 5.0212 -0.1037 5.4461 42 1 3.4259 -0.7192 4.9519 43 1 6.5542 -0.8602 3.4174 44 1 7.7365 0.4572 3.2326 45 1 6.7713 0.3301 4.7230 46 1 5.2301 3.1628 2.7926 47 1 5.9797 2.7352 4.3494 48 1 7.8328 2.1901 2.2884 49 1 10.6348 3.7486 1.3682 50 1 5.9457 -0.2080 1.2653 51 1 6.1332 1.5420 0.9349 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182708167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:32:12 Heat of formation + Delta-G solvation = -60.610125 kcal Electronic energy + Delta-G solvation = -29579.880023 eV Core-core repulsion = 25707.545793 eV Total energy + Delta-G solvation = -3872.334230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.79360 -39.74407 -38.25806 -35.50808 -34.80143 -33.44270 -32.61443 -31.53490 -29.94212 -29.64462 -27.98208 -26.59705 -25.65178 -25.15676 -23.37617 -22.20970 -21.08930 -20.62820 -19.64066 -18.41715 -17.70402 -17.08200 -16.76345 -16.15445 -15.92678 -15.52256 -15.19119 -14.89623 -14.41872 -14.34635 -14.01026 -13.83524 -13.66267 -13.50632 -13.04311 -12.94412 -12.81349 -12.72082 -12.69416 -12.35971 -12.10176 -12.03054 -11.82979 -11.67297 -11.53612 -11.43789 -11.23283 -11.11155 -10.95332 -10.81979 -10.46379 -10.31746 -10.16722 -10.05384 -9.88315 -9.82240 -9.58233 -9.22476 -8.85373 -8.63988 -6.88386 -5.73704 -3.01580 2.42240 2.60361 2.69487 3.25899 3.45764 3.51516 3.53560 4.23341 4.53993 4.60225 4.63523 4.69037 4.76602 4.82261 4.89853 4.98555 5.16039 5.18392 5.26899 5.29550 5.35719 5.38610 5.48892 5.55421 5.58704 5.59316 5.65259 5.71270 5.73024 5.84993 5.86361 5.91769 6.02351 6.09345 6.14646 6.16548 6.21017 6.21788 6.30825 6.42889 6.52971 6.70148 6.79712 6.88128 7.33690 7.58183 7.73765 8.02864 8.13644 8.45335 9.56831 10.13726 10.48428 11.49359 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.011817 B = 0.003644 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.994325 B = 7681.536608 C = 9342.106304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.131 3.869 4 H 0.112 0.888 5 N -0.710 5.710 6 C 0.514 3.486 7 C -0.170 4.170 8 O -0.546 6.546 9 C 0.529 3.471 10 O -0.530 6.530 11 N -0.613 5.613 12 C 0.101 3.899 13 C -0.099 4.099 14 H 0.083 0.917 15 C -0.142 4.142 16 C -0.075 4.075 17 C -0.134 4.134 18 C 0.169 3.831 19 N -0.729 5.729 20 C -0.237 4.237 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.114 3.886 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.411 0.589 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.016 0.984 47 H 0.021 0.979 48 H 0.384 0.616 49 H 0.254 0.746 50 H 0.068 0.932 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.968 -11.488 -2.593 22.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.022 3.978 4 H 0.130 0.870 5 N -0.365 5.365 6 C 0.301 3.699 7 C -0.230 4.230 8 O -0.423 6.423 9 C 0.316 3.684 10 O -0.407 6.407 11 N -0.347 5.347 12 C -0.022 4.022 13 C -0.119 4.119 14 H 0.101 0.899 15 C -0.199 4.199 16 C -0.076 4.076 17 C -0.191 4.191 18 C 0.041 3.959 19 N -0.374 5.374 20 C -0.368 4.368 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.582 5.582 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.008 4.008 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.248 0.752 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.034 0.966 47 H 0.039 0.961 48 H 0.219 0.781 49 H 0.064 0.936 50 H 0.086 0.914 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.190 -10.998 -2.471 22.256 hybrid contribution 0.989 0.831 -0.400 1.352 sum -18.201 -10.168 -2.871 21.045 Atomic orbital electron populations 1.21791 0.93996 1.00864 1.03254 1.22030 0.97696 0.94162 1.03381 1.20777 0.91571 0.95561 0.89869 0.86985 1.45896 1.17093 1.57428 1.16053 1.20764 0.81052 0.77714 0.90342 1.21839 1.03571 1.02612 0.94965 1.90724 1.51358 1.59249 1.40998 1.20083 0.89481 0.77755 0.81056 1.90748 1.65067 1.45179 1.39669 1.48804 1.08957 1.57052 1.19839 1.22649 0.97158 0.97341 0.85070 1.22161 0.95606 0.99197 0.94910 0.89899 1.21887 1.01348 0.97825 0.98832 1.21782 0.94223 0.97871 0.93769 1.21870 0.98908 0.97507 1.00857 1.20639 0.89001 0.90033 0.96188 1.42390 1.15551 1.10270 1.69167 1.19248 0.99345 0.87553 1.30688 0.91313 1.24703 0.97326 0.97643 1.01186 1.69654 1.12801 1.32016 1.43695 0.86139 0.78633 0.84366 0.77198 1.20627 1.21910 1.21890 1.22666 0.80299 1.02167 0.95672 0.91905 0.92411 0.93148 0.91283 0.90068 0.75220 0.90386 0.88764 0.88570 0.90341 0.90690 0.92041 0.91719 0.92986 0.93086 0.91269 0.92139 0.96578 0.96150 0.78113 0.93607 0.91374 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.52 37.16 0.32 -1.05 16 2 C -0.13 -1.29 5.37 -26.73 -0.14 -1.43 16 3 C 0.13 1.57 2.00 -69.08 -0.14 1.43 16 4 H 0.11 1.43 7.39 -51.93 -0.38 1.05 16 5 N -0.71 -8.04 4.90 -54.93 -0.27 -8.31 16 6 C 0.51 5.71 6.51 -10.98 -0.07 5.64 16 7 C -0.17 -1.23 10.39 36.01 0.37 -0.85 16 8 O -0.55 -7.72 14.24 5.56 0.08 -7.64 16 9 C 0.53 8.02 7.33 -10.98 -0.08 7.94 16 10 O -0.53 -10.12 16.10 5.56 0.09 -10.03 16 11 N -0.61 -8.59 3.30 -169.05 -0.56 -9.15 16 12 C 0.10 1.04 4.74 -2.41 -0.01 1.03 16 13 C -0.10 -1.14 3.30 -89.22 -0.29 -1.43 16 14 H 0.08 1.00 7.71 -51.93 -0.40 0.60 16 15 C -0.14 -1.29 7.93 37.16 0.29 -1.00 16 16 C -0.08 -1.14 0.73 -152.88 -0.11 -1.25 16 17 C -0.13 -1.92 7.11 37.16 0.26 -1.66 16 18 C 0.17 3.40 4.96 -4.04 -0.02 3.38 16 19 N -0.73 -18.35 4.80 -59.91 -0.29 -18.64 16 20 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 21 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -28.42 13.06 55.49 0.72 -27.70 16 24 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 28 C 0.11 1.83 5.94 -2.18 -0.01 1.82 16 29 H 0.06 0.66 7.85 -51.92 -0.41 0.26 16 30 H 0.06 0.62 5.64 -51.93 -0.29 0.33 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.08 0.68 5.27 -51.93 -0.27 0.41 16 34 H 0.41 4.42 7.63 -40.82 -0.31 4.11 16 35 H 0.08 0.44 7.91 -51.93 -0.41 0.03 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.70 6.64 -51.93 -0.34 0.35 16 39 H 0.07 0.64 7.68 -51.93 -0.40 0.24 16 40 H 0.06 0.53 6.62 -51.93 -0.34 0.19 16 41 H 0.06 0.63 6.99 -51.93 -0.36 0.26 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.60 6.68 -51.93 -0.35 0.25 16 44 H 0.07 1.20 6.75 -51.93 -0.35 0.85 16 45 H 0.06 0.83 6.89 -51.93 -0.36 0.48 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.38 10.04 5.99 -40.82 -0.24 9.80 16 49 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 50 H 0.07 0.98 7.84 -51.93 -0.41 0.58 16 51 H 0.10 2.07 6.97 -51.93 -0.36 1.71 16 LS Contribution 389.19 15.07 5.86 5.86 Total: -1.00 -34.63 389.19 -7.77 -42.40 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -8.50 Total: 10.11 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 0.12 Total: 5.21 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: -0.39 Total: -63.80 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.17 Total: -17.67 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.63 -7.77 -42.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182708167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.209 kcal (2) G-P(sol) polarization free energy of solvation -34.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds