Wall clock time and date at job start Sat Apr 11 2020 01:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47104 * 2 1 4 4 H 1.09001 * 109.46950 * 55.01033 * 3 2 1 5 5 N 1.46496 * 109.47575 * 295.00182 * 3 2 1 6 6 C 1.34777 * 119.99614 * 84.99689 * 5 3 2 7 7 C 1.50706 * 120.00110 * 180.02562 * 6 5 3 8 8 O 1.21283 * 120.00387 * 0.02562 * 6 5 3 9 9 C 1.50706 * 109.47023 * 175.00307 * 3 2 1 10 10 O 1.21279 * 119.99987 * 119.99776 * 9 3 2 11 11 N 1.34780 * 119.99731 * 300.00541 * 9 3 2 12 12 C 1.48140 * 127.84090 * 0.02562 * 11 9 3 13 13 C 1.54387 * 104.61737 * 219.58873 * 12 11 9 14 14 H 1.09003 * 110.34375 * 95.00405 * 13 12 11 15 15 C 1.53002 * 110.34230 * 217.15788 * 13 12 11 16 16 C 1.54287 * 104.96308 * 336.13300 * 13 12 11 17 17 C 1.52998 * 110.34379 * 241.12952 * 16 13 12 18 18 C 1.53002 * 110.34210 * 118.97255 * 16 13 12 19 19 N 1.46499 * 109.46764 * 180.02562 * 18 16 13 20 20 C 1.36937 * 119.99909 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99727 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00141 * 179.97438 * 20 19 18 23 23 N 1.31616 * 120.00128 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99820 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47465 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47090 * 120.00011 * 24 22 20 27 27 H 1.48500 * 109.46785 * 239.99878 * 24 22 20 28 28 C 1.48147 * 127.83060 * 179.70610 * 11 9 3 29 29 H 1.09007 * 109.46395 * 299.99527 * 1 2 3 30 30 H 1.08996 * 109.47009 * 59.99233 * 1 2 3 31 31 H 1.08999 * 109.47039 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46395 * 240.00472 * 2 1 3 33 33 H 1.08997 * 109.47491 * 120.00982 * 2 1 3 34 34 H 0.96996 * 120.00499 * 265.00266 * 5 3 2 35 35 H 1.09001 * 109.46953 * 0.02562 * 7 6 5 36 36 H 1.09000 * 109.47318 * 119.99741 * 7 6 5 37 37 H 1.09000 * 109.47161 * 240.00372 * 7 6 5 38 38 H 1.09005 * 110.40726 * 338.37157 * 12 11 9 39 39 H 1.09001 * 110.40615 * 100.68524 * 12 11 9 40 40 H 1.08994 * 109.47425 * 58.54508 * 15 13 12 41 41 H 1.09002 * 109.47187 * 178.55081 * 15 13 12 42 42 H 1.09003 * 109.47236 * 298.54310 * 15 13 12 43 43 H 1.09004 * 109.46806 * 59.99984 * 17 16 13 44 44 H 1.08998 * 109.46907 * 179.97438 * 17 16 13 45 45 H 1.08998 * 109.47348 * 299.99886 * 17 16 13 46 46 H 1.08995 * 109.47154 * 300.00308 * 18 16 13 47 47 H 1.09000 * 109.46578 * 60.00607 * 18 16 13 48 48 H 0.96999 * 120.00689 * 0.02562 * 19 18 16 49 49 H 0.96993 * 120.00140 * 179.97438 * 23 22 20 50 50 H 1.08997 * 110.40594 * 259.19070 * 28 11 9 51 51 H 1.08995 * 110.41339 * 21.62882 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 7 1.6525 2.0976 -1.2517 6 6 0.4351 2.6644 -1.3667 7 6 0.0361 3.3379 -2.6546 8 8 -0.3393 2.6327 -0.4339 9 6 3.5420 1.4443 0.1238 10 8 4.2217 1.9435 -0.7478 11 7 4.1298 0.8909 1.2030 12 6 3.4745 0.2385 2.3604 13 6 4.2951 0.7001 3.5839 14 1 3.8304 1.5717 4.0450 15 6 4.4184 -0.4362 4.6010 16 6 5.6821 1.0685 3.0174 17 6 6.7638 0.1855 3.6426 18 6 5.9871 2.5454 3.2761 19 7 7.3064 2.8743 2.7305 20 6 7.7964 4.1479 2.8448 21 1 7.2104 4.9097 3.3375 22 6 9.0466 4.4595 2.3284 23 7 9.7613 3.5308 1.7294 24 14 9.7153 6.1967 2.4850 25 1 8.7260 7.0457 3.1962 26 1 10.9865 6.1705 3.2521 27 1 9.9651 6.7547 1.1317 28 6 5.5783 0.7915 1.4978 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5140 0.8899 34 1 2.2719 2.1233 -1.9977 35 1 0.8545 3.2658 -3.3710 36 1 -0.8476 2.8472 -3.0626 37 1 -0.1872 4.3872 -2.4619 38 1 2.4403 0.5713 2.4489 39 1 3.5167 -0.8460 2.2594 40 1 4.8958 -1.2954 4.1300 41 1 5.0212 -0.1037 5.4461 42 1 3.4259 -0.7192 4.9519 43 1 6.5542 -0.8602 3.4174 44 1 7.7365 0.4572 3.2326 45 1 6.7713 0.3301 4.7230 46 1 5.2301 3.1628 2.7926 47 1 5.9797 2.7352 4.3494 48 1 7.8328 2.1901 2.2884 49 1 10.6348 3.7486 1.3682 50 1 5.9457 -0.2080 1.2653 51 1 6.1332 1.5420 0.9349 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182708167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:32:11 Heat of formation + Delta-G solvation = -85.569104 kcal Electronic energy + Delta-G solvation = -29580.962325 eV Core-core repulsion = 25707.545793 eV Total energy + Delta-G solvation = -3873.416532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.87702 -40.76380 -39.45418 -36.63911 -36.37347 -34.80090 -33.51980 -33.16519 -31.20757 -30.65007 -28.99106 -27.92428 -26.79506 -26.41952 -25.14166 -23.18128 -22.28749 -21.53693 -20.73815 -19.76424 -19.23990 -18.43131 -17.77188 -17.24771 -16.97598 -16.71037 -16.54787 -16.19219 -15.94808 -15.42341 -15.24703 -14.99953 -14.94071 -14.55529 -14.49817 -14.38753 -13.89111 -13.67908 -13.36078 -13.33231 -13.09812 -13.05905 -12.92991 -12.89193 -12.82755 -12.64862 -12.61023 -12.45967 -12.29933 -12.06876 -11.98860 -11.90749 -11.57591 -11.27092 -11.16631 -11.02145 -10.98366 -10.94225 -10.17421 -9.80760 -9.01409 -7.98433 -5.26157 1.39702 1.42314 1.43834 1.53420 1.54621 1.71113 2.33422 2.52304 3.20735 3.34823 3.55249 3.60210 3.75658 3.80042 3.91852 3.99054 4.14747 4.21271 4.31804 4.34457 4.40857 4.44697 4.51436 4.54582 4.63792 4.64491 4.72091 4.81130 4.83565 4.84755 4.88703 4.97945 5.00823 5.03524 5.04755 5.10259 5.13828 5.20510 5.29849 5.33407 5.41004 5.43733 5.45746 5.46945 5.68183 6.24421 6.45066 6.47915 6.94286 7.17316 7.31016 8.07058 8.31087 9.25194 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.011817 B = 0.003644 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.994325 B = 7681.536608 C = 9342.106304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.125 4.125 3 C 0.138 3.862 4 H 0.105 0.895 5 N -0.712 5.712 6 C 0.509 3.491 7 C -0.165 4.165 8 O -0.579 6.579 9 C 0.522 3.478 10 O -0.581 6.581 11 N -0.613 5.613 12 C 0.100 3.900 13 C -0.092 4.092 14 H 0.076 0.924 15 C -0.137 4.137 16 C -0.068 4.068 17 C -0.126 4.126 18 C 0.170 3.830 19 N -0.738 5.738 20 C -0.247 4.247 21 H 0.068 0.932 22 C -0.072 4.072 23 N -0.966 5.966 24 Si 0.970 3.030 25 H -0.269 1.269 26 H -0.288 1.288 27 H -0.295 1.295 28 C 0.116 3.884 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.413 0.587 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.030 0.970 45 H 0.067 0.933 46 H -0.005 1.005 47 H 0.023 0.977 48 H 0.377 0.623 49 H 0.252 0.748 50 H 0.089 0.911 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.940 -13.131 -1.730 24.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.164 4.164 3 C 0.030 3.970 4 H 0.123 0.877 5 N -0.367 5.367 6 C 0.299 3.701 7 C -0.224 4.224 8 O -0.459 6.459 9 C 0.311 3.689 10 O -0.461 6.461 11 N -0.345 5.345 12 C -0.022 4.022 13 C -0.111 4.111 14 H 0.095 0.905 15 C -0.194 4.194 16 C -0.070 4.070 17 C -0.184 4.184 18 C 0.043 3.957 19 N -0.381 5.381 20 C -0.379 4.379 21 H 0.086 0.914 22 C -0.264 4.264 23 N -0.617 5.617 24 Si 0.800 3.200 25 H -0.194 1.194 26 H -0.214 1.214 27 H -0.222 1.222 28 C -0.007 4.007 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.250 0.750 35 H 0.113 0.887 36 H 0.129 0.871 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.050 0.950 45 H 0.086 0.914 46 H 0.013 0.987 47 H 0.041 0.959 48 H 0.210 0.790 49 H 0.060 0.940 50 H 0.107 0.893 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -21.204 -12.658 -1.566 24.745 hybrid contribution 1.574 1.363 -0.650 2.181 sum -19.630 -11.296 -2.216 22.756 Atomic orbital electron populations 1.21713 0.93708 1.01717 1.02087 1.22009 0.97655 0.92237 1.04454 1.20763 0.88871 0.97340 0.90073 0.87730 1.46015 1.17335 1.57456 1.15852 1.21457 0.80381 0.77074 0.91225 1.21883 1.04856 1.02466 0.93201 1.90703 1.52161 1.60542 1.42465 1.20725 0.90692 0.76854 0.80628 1.90717 1.66397 1.47375 1.41623 1.48905 1.08364 1.56689 1.20502 1.22975 0.97612 0.98972 0.82607 1.22146 0.92680 1.00306 0.96015 0.90543 1.21868 1.03030 0.96774 0.97705 1.21684 0.97150 0.94475 0.93662 1.21822 0.96440 0.99236 1.00872 1.20755 0.86035 0.93515 0.95385 1.42557 1.17188 1.09171 1.69223 1.19615 0.99496 0.88888 1.29915 0.91389 1.25510 0.97836 1.01524 1.01549 1.69804 1.13000 1.33898 1.44958 0.85119 0.78080 0.79961 0.76886 1.19381 1.21434 1.22204 1.22495 0.81315 1.01369 0.95484 0.92918 0.93777 0.91171 0.90960 0.88189 0.74981 0.88726 0.87069 0.88073 0.88262 0.87276 0.90824 0.92297 0.90407 0.89498 0.95044 0.91402 0.98729 0.95916 0.78992 0.93961 0.89297 0.93819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 8.52 71.98 0.61 -1.70 16 2 C -0.13 -2.12 5.37 30.59 0.16 -1.95 16 3 C 0.14 3.23 2.00 44.25 0.09 3.32 16 4 H 0.11 2.62 7.39 -2.39 -0.02 2.61 16 5 N -0.71 -15.99 4.90 -446.09 -2.19 -18.18 16 6 C 0.51 11.05 6.51 87.66 0.57 11.62 16 7 C -0.17 -2.15 10.39 71.24 0.74 -1.41 16 8 O -0.58 -16.15 14.24 -3.04 -0.04 -16.19 16 9 C 0.52 15.97 7.33 87.66 0.64 16.62 16 10 O -0.58 -23.22 16.10 -3.03 -0.05 -23.27 16 11 N -0.61 -16.74 3.30 -807.14 -2.67 -19.40 16 12 C 0.10 1.74 4.74 86.53 0.41 2.15 16 13 C -0.09 -1.88 3.30 -9.89 -0.03 -1.91 16 14 H 0.08 1.69 7.71 -2.39 -0.02 1.67 16 15 C -0.14 -1.91 7.93 71.98 0.57 -1.34 16 16 C -0.07 -2.05 0.73 -51.13 -0.04 -2.08 16 17 C -0.13 -3.49 7.11 71.98 0.51 -2.98 16 18 C 0.17 7.04 4.96 86.38 0.43 7.47 16 19 N -0.74 -38.80 4.80 -343.45 -1.65 -40.45 16 20 C -0.25 -14.49 9.99 84.03 0.84 -13.65 16 21 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 22 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 23 N -0.97 -60.73 13.06 21.65 0.28 -60.44 16 24 Si 0.97 48.01 29.55 68.60 2.03 50.04 16 25 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 26 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 27 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 28 C 0.12 3.78 5.94 86.68 0.51 4.30 16 29 H 0.05 1.02 7.85 -2.38 -0.02 1.00 16 30 H 0.04 0.88 5.64 -2.39 -0.01 0.87 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 1.21 8.14 -2.38 -0.02 1.20 16 33 H 0.10 1.30 5.27 -2.39 -0.01 1.29 16 34 H 0.41 8.98 7.63 -92.71 -0.71 8.27 16 35 H 0.09 0.91 7.91 -2.39 -0.02 0.89 16 36 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.10 1.39 6.64 -2.38 -0.02 1.38 16 39 H 0.11 1.27 7.68 -2.39 -0.02 1.25 16 40 H 0.07 0.89 6.62 -2.39 -0.02 0.87 16 41 H 0.06 0.93 6.99 -2.39 -0.02 0.91 16 42 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.09 1.77 6.68 -2.38 -0.02 1.75 16 44 H 0.03 1.10 6.75 -2.39 -0.02 1.09 16 45 H 0.07 1.76 6.89 -2.39 -0.02 1.75 16 46 H -0.01 -0.24 8.14 -2.39 -0.02 -0.26 16 47 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.38 20.78 5.99 -92.71 -0.56 20.22 16 49 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 50 H 0.09 2.50 7.84 -2.39 -0.02 2.48 16 51 H 0.04 1.93 6.97 -2.39 -0.02 1.91 16 Total: -1.00 -79.85 389.19 1.89 -77.97 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: -0.32 Total: 35.29 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 6.49 Total: 14.64 kcal Atomic # 7 Polarization: -132.25 SS G_CDS: -6.22 Total: -138.47 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -0.09 Total: -39.46 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.04 kcal Total: -79.85 1.89 -77.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182708167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.602 kcal (2) G-P(sol) polarization free energy of solvation -79.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds