Wall clock time and date at job start Sat Apr 11 2020 01:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47322 * 2 1 4 4 C 1.50699 * 109.46991 * 179.97438 * 3 2 1 5 5 O 1.21278 * 120.00488 * 0.02562 * 4 3 2 6 6 N 1.34782 * 119.99844 * 179.97438 * 4 3 2 7 7 C 1.46928 * 120.63146 * 359.97438 * 6 4 3 8 8 C 1.53187 * 108.77623 * 126.41312 * 7 6 4 9 9 C 1.53036 * 109.33909 * 54.61900 * 8 7 6 10 10 H 1.08998 * 109.46343 * 58.67009 * 9 8 7 11 11 C 1.52999 * 109.46209 * 178.63045 * 9 8 7 12 12 N 1.46899 * 109.47093 * 294.99875 * 11 9 8 13 13 C 1.46908 * 111.00152 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.46982 * 180.02562 * 13 12 11 15 15 O 1.21293 * 120.00171 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99703 * 180.02562 * 14 13 12 17 17 C 1.37100 * 120.00182 * 180.02562 * 16 14 13 18 18 H 1.08004 * 119.99401 * 0.02562 * 17 16 14 19 19 C 1.38948 * 120.00306 * 180.02562 * 17 16 14 20 20 N 1.31409 * 119.99814 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99933 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47547 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47462 * 120.00119 * 21 19 17 24 24 H 1.48503 * 109.47066 * 239.99713 * 21 19 17 25 25 C 1.53042 * 109.54058 * 298.68652 * 9 8 7 26 26 H 1.09003 * 109.46473 * 301.36154 * 25 9 8 27 27 C 1.53003 * 109.49673 * 181.28678 * 25 9 8 28 28 C 1.46927 * 120.63238 * 180.02562 * 6 4 3 29 29 H 1.08998 * 109.47382 * 300.00549 * 1 2 3 30 30 H 1.09001 * 109.47211 * 60.00351 * 1 2 3 31 31 H 1.08999 * 109.47498 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47382 * 239.99451 * 2 1 3 33 33 H 1.09001 * 109.47211 * 119.99649 * 2 1 3 34 34 H 1.09000 * 109.47651 * 59.99852 * 3 2 1 35 35 H 1.08997 * 109.47129 * 299.99775 * 3 2 1 36 36 H 1.09000 * 109.58414 * 6.62478 * 7 6 4 37 37 H 1.09005 * 109.70435 * 246.27582 * 7 6 4 38 38 H 1.09002 * 109.49796 * 174.58834 * 8 7 6 39 39 H 1.09000 * 109.49812 * 294.65558 * 8 7 6 40 40 H 1.09003 * 109.47328 * 55.00309 * 11 9 8 41 41 H 1.09007 * 109.47272 * 175.00174 * 11 9 8 42 42 H 1.00895 * 111.00510 * 303.95506 * 12 11 9 43 43 H 1.08999 * 109.46915 * 300.00149 * 13 12 11 44 44 H 1.08995 * 109.46443 * 59.99948 * 13 12 11 45 45 H 0.96997 * 119.99994 * 359.97438 * 16 14 13 46 46 H 0.97001 * 120.00095 * 179.97438 * 20 19 17 47 47 H 1.09003 * 109.46801 * 300.12210 * 27 25 9 48 48 H 1.08991 * 109.47451 * 60.12323 * 27 25 9 49 49 H 1.09003 * 109.46796 * 180.12923 * 27 25 9 50 50 H 1.08999 * 109.58621 * 353.37832 * 28 6 4 51 51 H 1.09003 * 109.58297 * 113.65397 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2209 2.6096 0.0002 7 6 3.5004 3.8901 -0.0014 8 6 4.0079 4.7430 1.1655 9 6 5.5294 4.8778 1.0704 10 1 5.7947 5.3347 0.1171 11 6 6.0357 5.7575 2.2153 12 7 5.5137 7.1210 2.0529 13 6 5.9798 7.9958 3.1371 14 6 5.4248 9.3826 2.9373 15 8 4.7108 9.6188 1.9857 16 7 5.7218 10.3603 3.8161 17 6 5.2166 11.6218 3.6348 18 1 4.5801 11.8319 2.7878 19 6 5.5232 12.6299 4.5405 20 7 6.2971 12.3741 5.5712 21 14 4.8341 14.3485 4.2936 22 1 3.9970 14.3749 3.0673 23 1 4.0052 14.7228 5.4674 24 1 5.9529 15.3144 4.1496 25 6 6.1731 3.4928 1.1677 26 1 5.8886 3.0254 2.1105 27 6 7.6955 3.6317 1.1048 28 6 5.6901 2.6258 0.0003 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 2.4321 3.7083 0.1164 37 1 3.6807 4.4121 -0.9412 38 1 3.5514 5.7317 1.1190 39 1 3.7434 4.2640 2.1082 40 1 5.6941 5.3485 3.1662 41 1 7.1254 5.7815 2.2006 42 1 5.7627 7.4985 1.1509 43 1 5.6374 7.6022 4.0941 44 1 7.0690 8.0353 3.1292 45 1 6.2925 10.1713 4.5774 46 1 6.5115 13.0779 6.2033 47 1 7.9789 4.1004 0.1624 48 1 8.0387 4.2486 1.9352 49 1 8.1534 2.6448 1.1718 50 1 6.0667 1.6098 0.1191 51 1 6.0509 3.0415 -0.9406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183725781.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:32:26 Heat of formation + Delta-G solvation = -97.081532 kcal Electronic energy + Delta-G solvation = -27717.457460 eV Core-core repulsion = 23843.541712 eV Total energy + Delta-G solvation = -3873.915749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.58768 -38.66602 -38.06769 -35.57746 -34.75285 -34.05876 -33.60311 -31.93752 -31.20969 -28.92964 -28.16808 -26.54581 -25.70190 -23.99031 -22.85061 -22.26529 -21.71892 -20.29050 -19.28738 -19.07234 -17.89587 -17.27170 -16.32260 -16.22212 -16.07266 -15.49544 -15.11040 -14.83315 -14.57325 -14.41685 -14.22757 -14.08721 -13.73329 -13.56368 -13.48575 -13.13911 -13.02278 -12.76054 -12.44014 -12.32419 -12.28747 -12.18061 -11.90999 -11.73675 -11.57964 -11.51655 -11.41810 -11.20175 -11.07937 -11.05385 -10.85626 -10.62537 -10.44215 -10.35728 -10.23654 -9.93172 -9.53484 -8.84698 -8.45964 -8.04548 -7.96887 -6.43325 -3.84163 2.41806 2.75835 3.14987 3.25649 3.32751 3.89583 4.06411 4.22401 4.27704 4.45831 4.57664 4.58779 4.68695 4.75908 4.77136 4.96633 5.07502 5.14603 5.16671 5.18453 5.23665 5.24020 5.29311 5.34045 5.38626 5.41403 5.48557 5.54878 5.58545 5.70846 5.72823 5.76406 5.78915 5.83402 5.86171 5.91485 5.97116 5.99239 6.02656 6.16003 6.24412 6.29845 6.38712 7.17264 7.21222 7.53824 7.65727 7.95930 8.05122 8.59678 9.16439 9.53029 10.04257 10.74493 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.019973 B = 0.002002 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.561780 B =13981.582025 C =14984.136410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.141 4.141 4 C 0.514 3.486 5 O -0.548 6.548 6 N -0.612 5.612 7 C 0.103 3.897 8 C -0.124 4.124 9 C -0.078 4.078 10 H 0.072 0.928 11 C 0.061 3.939 12 N -0.667 5.667 13 C 0.051 3.949 14 C 0.441 3.559 15 O -0.584 6.584 16 N -0.565 5.565 17 C -0.299 4.299 18 H 0.104 0.896 19 C 0.021 3.979 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.282 1.282 25 C -0.100 4.100 26 H 0.074 0.926 27 C -0.149 4.149 28 C 0.117 3.883 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.348 0.652 43 H 0.085 0.915 44 H 0.042 0.958 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.055 0.945 50 H 0.090 0.910 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.257 -21.604 -8.854 23.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.181 4.181 4 C 0.303 3.697 5 O -0.426 6.426 6 N -0.346 5.346 7 C -0.019 4.019 8 C -0.162 4.162 9 C -0.097 4.097 10 H 0.090 0.910 11 C -0.068 4.068 12 N -0.300 5.300 13 C -0.082 4.082 14 C 0.227 3.773 15 O -0.468 6.468 16 N -0.201 5.201 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.208 1.208 25 C -0.119 4.119 26 H 0.093 0.907 27 C -0.207 4.207 28 C -0.005 4.005 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.050 0.950 42 H 0.167 0.833 43 H 0.103 0.897 44 H 0.060 0.940 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.083 0.917 49 H 0.074 0.926 50 H 0.108 0.892 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.964 -22.001 -9.043 24.115 hybrid contribution 1.057 1.117 0.331 1.573 sum -2.907 -20.884 -8.713 22.814 Atomic orbital electron populations 1.21796 0.95429 1.01949 1.01895 1.21282 0.95295 0.94704 1.03423 1.21760 0.91838 1.00100 1.04385 1.20790 0.90431 0.83073 0.75451 1.90675 1.70517 1.31063 1.50319 1.48207 1.06959 1.06219 1.73187 1.21889 0.96638 0.83622 0.99763 1.21902 0.95535 1.01180 0.97544 1.21139 0.95336 0.94071 0.99135 0.90956 1.22086 0.96675 0.89458 0.98620 1.60051 1.63138 1.00935 1.05845 1.21657 0.97318 0.93206 0.95987 1.19822 0.86088 0.85850 0.85574 1.90516 1.41197 1.82725 1.32360 1.41881 1.44974 1.08955 1.24306 1.19753 1.27768 0.84875 1.10439 0.87864 1.25269 0.97015 1.00308 0.95432 1.69619 1.36632 1.34501 1.13559 0.85798 0.78593 0.81492 0.78443 1.19214 1.20742 1.20785 1.21502 0.95722 0.95687 0.99022 0.90720 1.21855 0.94465 1.01926 1.02454 1.21646 0.79298 1.01536 0.98037 0.92584 0.92655 0.92437 0.91376 0.91323 0.88769 0.88918 0.89677 0.91118 0.88500 0.91777 0.91261 0.95017 0.83309 0.89727 0.94009 0.77478 0.91925 0.92437 0.91715 0.92553 0.89168 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.15 0.37 -0.54 16 2 C -0.11 -0.85 5.22 -26.73 -0.14 -0.99 16 3 C -0.14 -1.05 4.05 -27.88 -0.11 -1.16 16 4 C 0.51 5.47 7.70 -10.98 -0.08 5.38 16 5 O -0.55 -7.76 15.40 5.56 0.09 -7.68 16 6 N -0.61 -5.78 2.97 -172.74 -0.51 -6.30 16 7 C 0.10 0.82 6.34 -3.71 -0.02 0.80 16 8 C -0.12 -1.18 5.26 -26.62 -0.14 -1.32 16 9 C -0.08 -0.75 1.84 -90.58 -0.17 -0.91 16 10 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 11 C 0.06 0.69 4.84 -3.83 -0.02 0.67 16 12 N -0.67 -10.01 5.56 -115.05 -0.64 -10.65 16 13 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 14 C 0.44 10.22 7.82 -10.99 -0.09 10.13 16 15 O -0.58 -15.51 15.78 5.55 0.09 -15.42 16 16 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 17 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 18 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 20 N -0.90 -24.41 13.05 55.50 0.72 -23.68 16 21 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 C -0.10 -0.87 2.42 -90.48 -0.22 -1.09 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 27 C -0.15 -1.18 8.82 37.16 0.33 -0.85 16 28 C 0.12 1.09 5.72 -3.69 -0.02 1.07 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 33 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 34 H 0.09 0.60 7.69 -51.93 -0.40 0.20 16 35 H 0.09 0.55 7.94 -51.93 -0.41 0.14 16 36 H 0.08 0.54 5.93 -51.93 -0.31 0.23 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 1.09 7.72 -51.93 -0.40 0.69 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.03 0.34 6.14 -51.92 -0.32 0.02 16 42 H 0.35 5.42 8.43 -39.29 -0.33 5.09 16 43 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 46 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.53 6.30 -51.93 -0.33 0.20 16 49 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.09 0.96 7.01 -51.93 -0.36 0.60 16 51 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 402.77 15.07 6.07 6.07 Total: -1.00 -32.23 402.77 -8.89 -41.11 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -9.03 Total: 10.81 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -0.59 Total: 4.09 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.49 Total: -54.85 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: 0.17 Total: -23.10 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.23 -8.89 -41.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183725781.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.968 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds