Wall clock time and date at job start Sat Apr 11 2020 01:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47322 * 2 1 4 4 C 1.50699 * 109.46991 * 179.97438 * 3 2 1 5 5 O 1.21278 * 120.00488 * 0.02562 * 4 3 2 6 6 N 1.34782 * 119.99844 * 179.97438 * 4 3 2 7 7 C 1.46928 * 120.63146 * 359.97438 * 6 4 3 8 8 C 1.53187 * 108.77623 * 126.41312 * 7 6 4 9 9 C 1.53036 * 109.33909 * 54.61900 * 8 7 6 10 10 H 1.08998 * 109.46343 * 58.67009 * 9 8 7 11 11 C 1.52999 * 109.46209 * 178.63045 * 9 8 7 12 12 N 1.46899 * 109.47093 * 294.99875 * 11 9 8 13 13 C 1.46908 * 111.00152 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.46982 * 180.02562 * 13 12 11 15 15 O 1.21293 * 120.00171 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99703 * 180.02562 * 14 13 12 17 17 C 1.37100 * 120.00182 * 180.02562 * 16 14 13 18 18 H 1.08004 * 119.99401 * 0.02562 * 17 16 14 19 19 C 1.38948 * 120.00306 * 180.02562 * 17 16 14 20 20 N 1.31409 * 119.99814 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99933 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47547 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47462 * 120.00119 * 21 19 17 24 24 H 1.48503 * 109.47066 * 239.99713 * 21 19 17 25 25 C 1.53042 * 109.54058 * 298.68652 * 9 8 7 26 26 H 1.09003 * 109.46473 * 301.36154 * 25 9 8 27 27 C 1.53003 * 109.49673 * 181.28678 * 25 9 8 28 28 C 1.46927 * 120.63238 * 180.02562 * 6 4 3 29 29 H 1.08998 * 109.47382 * 300.00549 * 1 2 3 30 30 H 1.09001 * 109.47211 * 60.00351 * 1 2 3 31 31 H 1.08999 * 109.47498 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47382 * 239.99451 * 2 1 3 33 33 H 1.09001 * 109.47211 * 119.99649 * 2 1 3 34 34 H 1.09000 * 109.47651 * 59.99852 * 3 2 1 35 35 H 1.08997 * 109.47129 * 299.99775 * 3 2 1 36 36 H 1.09000 * 109.58414 * 6.62478 * 7 6 4 37 37 H 1.09005 * 109.70435 * 246.27582 * 7 6 4 38 38 H 1.09002 * 109.49796 * 174.58834 * 8 7 6 39 39 H 1.09000 * 109.49812 * 294.65558 * 8 7 6 40 40 H 1.09003 * 109.47328 * 55.00309 * 11 9 8 41 41 H 1.09007 * 109.47272 * 175.00174 * 11 9 8 42 42 H 1.00895 * 111.00510 * 303.95506 * 12 11 9 43 43 H 1.08999 * 109.46915 * 300.00149 * 13 12 11 44 44 H 1.08995 * 109.46443 * 59.99948 * 13 12 11 45 45 H 0.96997 * 119.99994 * 359.97438 * 16 14 13 46 46 H 0.97001 * 120.00095 * 179.97438 * 20 19 17 47 47 H 1.09003 * 109.46801 * 300.12210 * 27 25 9 48 48 H 1.08991 * 109.47451 * 60.12323 * 27 25 9 49 49 H 1.09003 * 109.46796 * 180.12923 * 27 25 9 50 50 H 1.08999 * 109.58621 * 353.37832 * 28 6 4 51 51 H 1.09003 * 109.58297 * 113.65397 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3921 0.0006 6 7 4.2209 2.6096 0.0002 7 6 3.5004 3.8901 -0.0014 8 6 4.0079 4.7430 1.1655 9 6 5.5294 4.8778 1.0704 10 1 5.7947 5.3347 0.1171 11 6 6.0357 5.7575 2.2153 12 7 5.5137 7.1210 2.0529 13 6 5.9798 7.9958 3.1371 14 6 5.4248 9.3826 2.9373 15 8 4.7108 9.6188 1.9857 16 7 5.7218 10.3603 3.8161 17 6 5.2166 11.6218 3.6348 18 1 4.5801 11.8319 2.7878 19 6 5.5232 12.6299 4.5405 20 7 6.2971 12.3741 5.5712 21 14 4.8341 14.3485 4.2936 22 1 3.9970 14.3749 3.0673 23 1 4.0052 14.7228 5.4674 24 1 5.9529 15.3144 4.1496 25 6 6.1731 3.4928 1.1677 26 1 5.8886 3.0254 2.1105 27 6 7.6955 3.6317 1.1048 28 6 5.6901 2.6258 0.0003 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 2.4321 3.7083 0.1164 37 1 3.6807 4.4121 -0.9412 38 1 3.5514 5.7317 1.1190 39 1 3.7434 4.2640 2.1082 40 1 5.6941 5.3485 3.1662 41 1 7.1254 5.7815 2.2006 42 1 5.7627 7.4985 1.1509 43 1 5.6374 7.6022 4.0941 44 1 7.0690 8.0353 3.1292 45 1 6.2925 10.1713 4.5774 46 1 6.5115 13.0779 6.2033 47 1 7.9789 4.1004 0.1624 48 1 8.0387 4.2486 1.9352 49 1 8.1534 2.6448 1.1718 50 1 6.0667 1.6098 0.1191 51 1 6.0509 3.0415 -0.9406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183725781.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:32:25 Heat of formation + Delta-G solvation = -118.547914 kcal Electronic energy + Delta-G solvation = -27718.388313 eV Core-core repulsion = 23843.541712 eV Total energy + Delta-G solvation = -3874.846601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.37994 -40.16100 -39.26083 -36.72035 -35.86416 -35.40297 -34.60349 -33.26739 -32.74785 -29.69635 -29.20576 -27.46551 -26.95420 -25.49145 -23.72010 -22.97687 -22.48343 -21.28973 -20.79923 -19.95081 -19.82359 -18.09854 -17.74691 -17.07374 -16.96266 -16.80224 -16.46633 -16.09596 -15.62958 -15.56536 -15.35986 -15.18206 -15.04414 -14.44456 -14.36778 -14.19269 -13.92711 -13.72283 -13.66565 -13.42614 -13.14422 -12.99641 -12.92757 -12.87675 -12.83047 -12.60720 -12.49019 -12.39608 -12.10801 -11.99487 -11.93670 -11.70151 -11.63339 -11.50726 -11.42479 -11.23188 -10.75705 -10.32200 -10.00446 -9.62962 -9.23675 -8.46083 -5.94660 1.37340 1.42738 1.56828 1.61826 2.03146 2.06754 2.29791 2.94037 3.21505 3.52308 3.55191 3.73881 3.80794 3.97353 3.99641 4.04014 4.10739 4.30340 4.32610 4.40556 4.46878 4.50054 4.55761 4.57670 4.58731 4.66395 4.68909 4.72026 4.75403 4.81509 4.85346 4.91156 4.96020 5.00410 5.06716 5.19351 5.23524 5.27269 5.28612 5.38813 5.42019 5.45561 5.50995 5.62878 5.91246 6.12969 6.41613 6.46032 6.60994 7.13638 7.16642 7.57720 8.12637 8.71551 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.019973 B = 0.002002 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.561780 B =13981.582025 C =14984.136410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C -0.136 4.136 4 C 0.506 3.494 5 O -0.591 6.591 6 N -0.611 5.611 7 C 0.106 3.894 8 C -0.119 4.119 9 C -0.072 4.072 10 H 0.074 0.926 11 C 0.065 3.935 12 N -0.676 5.676 13 C 0.065 3.935 14 C 0.439 3.561 15 O -0.621 6.621 16 N -0.575 5.575 17 C -0.332 4.332 18 H 0.080 0.920 19 C -0.015 4.015 20 N -0.921 5.921 21 Si 0.993 3.007 22 H -0.272 1.272 23 H -0.272 1.272 24 H -0.272 1.272 25 C -0.089 4.089 26 H 0.065 0.935 27 C -0.147 4.147 28 C 0.116 3.884 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.044 0.956 42 H 0.344 0.656 43 H 0.100 0.900 44 H 0.064 0.936 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.060 0.940 50 H 0.074 0.926 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.599 -21.446 -8.956 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.176 4.176 4 C 0.297 3.703 5 O -0.472 6.472 6 N -0.343 5.343 7 C -0.016 4.016 8 C -0.157 4.157 9 C -0.091 4.091 10 H 0.092 0.908 11 C -0.063 4.063 12 N -0.308 5.308 13 C -0.067 4.067 14 C 0.227 3.773 15 O -0.507 6.507 16 N -0.213 5.213 17 C -0.462 4.462 18 H 0.098 0.902 19 C -0.214 4.214 20 N -0.562 5.562 21 Si 0.817 3.183 22 H -0.197 1.197 23 H -0.197 1.197 24 H -0.197 1.197 25 C -0.109 4.109 26 H 0.084 0.916 27 C -0.205 4.205 28 C -0.006 4.006 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.163 0.837 43 H 0.118 0.882 44 H 0.081 0.919 45 H 0.230 0.770 46 H 0.086 0.914 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.079 0.921 50 H 0.093 0.907 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.294 -21.846 -9.129 24.063 hybrid contribution 1.184 1.017 0.345 1.599 sum -3.110 -20.829 -8.785 22.819 Atomic orbital electron populations 1.21762 0.93750 1.02383 1.02685 1.21247 0.96660 0.94752 1.01951 1.21810 0.89413 1.00221 1.06109 1.21389 0.91736 0.82627 0.74574 1.90655 1.71575 1.32555 1.52408 1.48305 1.07091 1.06537 1.72354 1.21977 0.97598 0.82609 0.99451 1.21819 0.95371 1.00503 0.98051 1.21088 0.95465 0.94052 0.98508 0.90752 1.22129 0.97333 0.87528 0.99351 1.60047 1.63822 1.01999 1.04969 1.21510 0.98180 0.89648 0.97383 1.20884 0.84728 0.87604 0.84113 1.90485 1.42673 1.83867 1.33709 1.41960 1.45450 1.08835 1.25013 1.19709 1.29032 0.86729 1.10682 0.90227 1.26047 0.96948 1.03587 0.94850 1.69679 1.36906 1.35780 1.13875 0.84865 0.78137 0.77012 0.78293 1.19691 1.19703 1.19679 1.21380 0.96340 0.94817 0.98319 0.91623 1.21837 0.93606 1.02295 1.02726 1.21645 0.79522 1.00788 0.98679 0.91920 0.91655 0.92279 0.92747 0.93022 0.87152 0.86743 0.87619 0.90206 0.90082 0.92258 0.91194 0.93846 0.83750 0.88167 0.91859 0.77044 0.91355 0.91899 0.91699 0.92119 0.90709 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 71.98 0.71 -0.81 16 2 C -0.11 -1.61 5.22 30.59 0.16 -1.45 16 3 C -0.14 -1.80 4.05 29.85 0.12 -1.68 16 4 C 0.51 10.43 7.70 87.66 0.67 11.10 16 5 O -0.59 -17.02 15.40 -3.02 -0.05 -17.07 16 6 N -0.61 -10.78 2.97 -818.82 -2.43 -13.21 16 7 C 0.11 1.47 6.34 86.36 0.55 2.01 16 8 C -0.12 -2.09 5.26 30.67 0.16 -1.93 16 9 C -0.07 -1.27 1.84 -10.77 -0.02 -1.29 16 10 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 11 C 0.07 1.36 4.84 86.30 0.42 1.77 16 12 N -0.68 -19.37 5.56 -517.92 -2.88 -22.25 16 13 C 0.07 2.14 6.17 85.55 0.53 2.66 16 14 C 0.44 20.34 7.82 87.66 0.69 21.03 16 15 O -0.62 -33.42 15.78 -3.07 -0.05 -33.47 16 16 N -0.58 -29.11 5.29 -306.98 -1.62 -30.73 16 17 C -0.33 -18.66 9.68 84.04 0.81 -17.85 16 18 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 19 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 20 N -0.92 -49.39 13.05 21.66 0.28 -49.10 16 21 Si 0.99 42.51 29.55 68.60 2.03 44.54 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 25 C -0.09 -1.44 2.42 -10.70 -0.03 -1.47 16 26 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 27 C -0.15 -2.08 8.82 71.98 0.63 -1.45 16 28 C 0.12 2.06 5.72 86.37 0.49 2.55 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 33 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 34 H 0.11 1.13 7.69 -2.39 -0.02 1.11 16 35 H 0.11 1.04 7.94 -2.39 -0.02 1.02 16 36 H 0.11 1.05 5.93 -2.39 -0.01 1.03 16 37 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.08 1.74 7.72 -2.39 -0.02 1.72 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 41 H 0.04 0.83 6.14 -2.38 -0.01 0.82 16 42 H 0.34 10.37 8.43 -89.70 -0.76 9.62 16 43 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 44 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 46 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 47 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.06 0.93 6.30 -2.39 -0.02 0.91 16 49 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 50 H 0.07 1.59 7.01 -2.39 -0.02 1.58 16 51 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -70.34 402.77 1.09 -69.25 By element: Atomic # 1 Polarization: 39.72 SS G_CDS: -0.57 Total: 39.16 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 6.37 Total: 12.89 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -6.65 Total: -115.30 kcal Atomic # 8 Polarization: -50.45 SS G_CDS: -0.09 Total: -50.54 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -70.34 1.09 -69.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183725781.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.299 kcal (2) G-P(sol) polarization free energy of solvation -70.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds