Wall clock time and date at job start Sat Apr 11 2020 01:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47059 * 2 1 4 4 H 1.08999 * 109.47309 * 54.99473 * 3 2 1 5 5 C 1.53003 * 109.46907 * 294.99769 * 3 2 1 6 6 C 1.52992 * 109.47148 * 174.99761 * 3 2 1 7 7 C 1.50700 * 109.47257 * 184.99859 * 6 3 2 8 8 O 1.21279 * 120.00113 * 0.02562 * 7 6 3 9 9 N 1.34784 * 119.99961 * 180.02562 * 7 6 3 10 10 C 1.46927 * 120.62995 * 359.72079 * 9 7 6 11 11 C 1.52758 * 109.00682 * 233.58186 * 10 9 7 12 12 C 1.53039 * 109.38439 * 305.58958 * 11 10 9 13 13 N 1.46898 * 109.44660 * 181.25519 * 12 11 10 14 14 C 1.46895 * 111.00349 * 84.93830 * 13 12 11 15 15 C 1.50702 * 109.47304 * 179.97438 * 14 13 12 16 16 O 1.21291 * 120.00104 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99592 * 180.02562 * 15 14 13 18 18 C 1.37099 * 119.99737 * 180.02562 * 17 15 14 19 19 H 1.08005 * 119.99932 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00574 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00421 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99390 * 359.97438 * 20 18 17 23 23 H 1.48493 * 109.47299 * 90.00322 * 22 20 18 24 24 H 1.48501 * 109.47050 * 210.00368 * 22 20 18 25 25 H 1.48500 * 109.47601 * 330.00116 * 22 20 18 26 26 C 1.53041 * 109.53647 * 61.24252 * 12 11 10 27 27 C 1.46923 * 120.62964 * 179.97438 * 9 7 6 28 28 H 1.09000 * 109.46811 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46881 * 300.00419 * 1 2 3 30 30 H 1.09003 * 109.46873 * 59.99943 * 1 2 3 31 31 H 1.09002 * 109.47294 * 239.99950 * 2 1 3 32 32 H 1.08998 * 109.46855 * 119.99575 * 2 1 3 33 33 H 1.09005 * 109.46613 * 180.02562 * 5 3 2 34 34 H 1.08993 * 109.47263 * 299.99732 * 5 3 2 35 35 H 1.08998 * 109.47147 * 60.00317 * 5 3 2 36 36 H 1.09004 * 109.47330 * 64.99881 * 6 3 2 37 37 H 1.08997 * 109.47279 * 305.00368 * 6 3 2 38 38 H 1.09003 * 109.58790 * 353.42296 * 10 9 7 39 39 H 1.09007 * 109.58432 * 113.84106 * 10 9 7 40 40 H 1.08998 * 109.56153 * 185.55612 * 11 10 9 41 41 H 1.09003 * 109.38437 * 65.51806 * 11 10 9 42 42 H 1.09000 * 109.45771 * 301.22193 * 12 11 10 43 43 H 1.00900 * 111.00211 * 320.98302 * 13 12 11 44 44 H 1.08993 * 109.47349 * 300.00358 * 14 13 12 45 45 H 1.09001 * 109.47031 * 59.99774 * 14 13 12 46 46 H 0.96996 * 120.00887 * 0.02562 * 17 15 14 47 47 H 0.97002 * 119.99536 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.49638 * 178.68503 * 26 12 11 49 49 H 1.08997 * 109.52468 * 58.59952 * 26 12 11 50 50 H 1.08998 * 109.59009 * 246.15627 * 27 9 7 51 51 H 1.09003 * 109.58381 * 6.44334 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4444 0.1258 7 6 4.0570 2.8634 0.2493 8 8 3.2660 3.7827 0.2383 9 7 5.3762 3.1109 0.3719 10 6 6.3461 2.0074 0.3930 11 6 7.2188 2.1358 1.6401 12 6 7.8506 3.5292 1.6767 13 7 8.7139 3.6439 2.8597 14 6 10.0549 3.1102 2.5865 15 6 10.9102 3.2452 3.8200 16 8 10.4479 3.7372 4.8276 17 7 12.1888 2.8193 3.8033 18 6 12.9667 2.9416 4.9256 19 1 12.5550 3.3797 5.8228 20 6 14.2850 2.5030 4.9084 21 7 15.0308 2.6208 5.9840 22 14 14.9972 1.7460 3.3562 23 1 15.6019 2.8121 2.5179 24 1 16.0394 0.7536 3.7227 25 1 13.9166 1.0702 2.5941 26 6 6.7488 4.5891 1.7449 27 6 5.8713 4.4889 0.4927 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.9991 3.1541 -1.3076 34 1 2.0700 1.5875 -2.1491 35 1 0.5490 2.1252 -1.3970 36 1 4.0030 0.9836 -0.7596 37 1 3.8570 0.8801 1.0113 38 1 5.8159 1.0552 0.4160 39 1 6.9747 2.0564 -0.4962 40 1 8.0044 1.3807 1.6151 41 1 6.6038 1.9917 2.5285 42 1 8.4459 3.6816 0.7764 43 1 8.2979 3.1858 3.6567 44 1 9.9782 2.0586 2.3105 45 1 10.5083 3.6685 1.7675 46 1 12.5586 2.4261 2.9974 47 1 15.9511 2.3142 5.9719 48 1 7.1998 5.5801 1.7944 49 1 6.1376 4.4227 2.6320 50 1 6.4605 4.7440 -0.3881 51 1 5.0278 5.1739 0.5791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200271539.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:32:49 Heat of formation + Delta-G solvation = -86.988789 kcal Electronic energy + Delta-G solvation = -27712.783095 eV Core-core repulsion = 23839.305000 eV Total energy + Delta-G solvation = -3873.478095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.64688 -38.82367 -38.01937 -36.59943 -35.18612 -33.94172 -32.15164 -31.69286 -31.07810 -30.73147 -28.11623 -26.91179 -24.91718 -24.19210 -23.51937 -22.91403 -21.12458 -20.31829 -19.49353 -19.12422 -18.31249 -17.46822 -16.33808 -16.01619 -15.99668 -15.43646 -15.30739 -14.95559 -14.76571 -14.53804 -14.35591 -14.18563 -13.96452 -13.84178 -13.46991 -13.18049 -12.89022 -12.77707 -12.69581 -12.45731 -12.30933 -12.18563 -12.09246 -11.94735 -11.71786 -11.61398 -11.50846 -11.20399 -11.17349 -10.99846 -10.94761 -10.89708 -10.71843 -10.62015 -9.99817 -9.87365 -9.59851 -8.94069 -8.62134 -8.21707 -8.15201 -6.33263 -3.84843 2.38271 2.70015 2.99279 3.04438 3.12666 3.71062 4.00097 4.08026 4.13994 4.34285 4.43265 4.50799 4.64384 4.71427 4.77393 4.82415 4.89775 4.97901 5.02001 5.08772 5.16290 5.19664 5.21574 5.28463 5.31667 5.34068 5.41817 5.44499 5.47406 5.58795 5.62623 5.65803 5.69737 5.72295 5.73310 5.81511 5.86236 5.89996 5.92409 6.06699 6.12224 6.16650 6.31986 7.07715 7.12228 7.52968 7.56161 7.93590 8.12279 8.57389 8.92793 9.40019 9.80230 10.79846 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.025099 B = 0.001946 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.292506 B =14381.359367 C =14758.920849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.077 4.077 4 H 0.078 0.922 5 C -0.154 4.154 6 C -0.138 4.138 7 C 0.516 3.484 8 O -0.539 6.539 9 N -0.613 5.613 10 C 0.112 3.888 11 C -0.170 4.170 12 C 0.089 3.911 13 N -0.663 5.663 14 C 0.048 3.952 15 C 0.449 3.551 16 O -0.564 6.564 17 N -0.590 5.590 18 C -0.306 4.306 19 H 0.119 0.881 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.270 1.270 26 C -0.121 4.121 27 C 0.111 3.889 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.352 0.648 44 H 0.044 0.956 45 H 0.087 0.913 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.085 0.915 49 H 0.067 0.933 50 H 0.066 0.934 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.896 -6.355 -18.377 30.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.096 4.096 4 H 0.096 0.904 5 C -0.211 4.211 6 C -0.177 4.177 7 C 0.304 3.696 8 O -0.416 6.416 9 N -0.347 5.347 10 C -0.012 4.012 11 C -0.210 4.210 12 C -0.022 4.022 13 N -0.294 5.294 14 C -0.085 4.085 15 C 0.234 3.766 16 O -0.446 6.446 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.707 3.293 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.159 4.159 27 C -0.011 4.011 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.172 0.828 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.104 0.896 49 H 0.086 0.914 50 H 0.085 0.915 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.217 -4.898 -17.694 29.599 hybrid contribution 0.885 -1.779 -1.102 2.272 sum -22.332 -6.677 -18.796 29.943 Atomic orbital electron populations 1.21807 0.95682 1.01478 1.02111 1.21598 0.96255 0.96044 1.01911 1.20933 0.92655 0.96046 0.99924 0.90382 1.21988 1.01201 1.02067 0.95808 1.21810 0.97822 0.94108 1.04005 1.20714 0.81516 0.91743 0.75587 1.90657 1.54071 1.46738 1.50169 1.48208 1.06074 1.07716 1.72727 1.21610 0.91348 0.89787 0.98446 1.22670 0.99900 0.99742 0.98654 1.21587 0.93572 0.92657 0.94372 1.60164 1.01525 1.62037 1.05641 1.21738 0.90589 0.98084 0.98048 1.19724 0.82853 0.84337 0.89641 1.90572 1.72600 1.47359 1.34077 1.42205 1.10956 1.56074 1.13760 1.19436 0.92835 1.38833 0.92342 0.86291 1.25045 0.96021 0.97803 0.97308 1.69624 1.08498 1.46403 1.27547 0.86664 0.79702 0.79843 0.83101 1.19591 1.20190 1.19575 1.21892 0.96205 1.00287 0.97564 1.21660 0.98682 0.82883 0.97918 0.92865 0.92686 0.92414 0.91992 0.91991 0.90793 0.93504 0.92700 0.89011 0.88934 0.89706 0.91114 0.90458 0.91012 0.90342 0.82840 0.93815 0.89512 0.79720 0.91601 0.89630 0.91398 0.91530 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.67 37.16 0.36 -0.53 16 2 C -0.12 -0.71 5.40 -26.73 -0.14 -0.85 16 3 C -0.08 -0.57 2.04 -90.62 -0.18 -0.76 16 4 H 0.08 0.71 7.95 -51.93 -0.41 0.30 16 5 C -0.15 -1.23 8.69 37.16 0.32 -0.90 16 6 C -0.14 -0.95 3.52 -27.89 -0.10 -1.05 16 7 C 0.52 5.14 7.41 -10.98 -0.08 5.06 16 8 O -0.54 -7.17 13.38 5.56 0.07 -7.10 16 9 N -0.61 -5.45 2.98 -173.00 -0.52 -5.97 16 10 C 0.11 0.76 6.31 -3.93 -0.02 0.73 16 11 C -0.17 -1.43 5.31 -26.84 -0.14 -1.57 16 12 C 0.09 0.93 2.43 -67.67 -0.16 0.76 16 13 N -0.66 -9.61 5.87 -107.95 -0.63 -10.24 16 14 C 0.05 0.75 5.96 -4.98 -0.03 0.72 16 15 C 0.45 9.96 7.82 -10.99 -0.09 9.87 16 16 O -0.56 -15.01 15.78 5.55 0.09 -14.92 16 17 N -0.59 -13.81 5.09 -10.96 -0.06 -13.87 16 18 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 16 19 H 0.12 3.83 7.39 -52.48 -0.39 3.45 16 20 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 21 N -0.88 -25.56 13.96 55.50 0.77 -24.79 16 22 Si 0.88 19.06 27.74 -169.99 -4.71 14.35 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 26 C -0.12 -1.24 5.69 -26.59 -0.15 -1.39 16 27 C 0.11 1.04 6.44 -3.69 -0.02 1.02 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.33 6.57 -51.93 -0.34 -0.01 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.76 5.95 -51.93 -0.31 0.45 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.05 0.40 6.56 -51.93 -0.34 0.06 16 36 H 0.09 0.49 7.95 -51.93 -0.41 0.08 16 37 H 0.09 0.53 7.68 -51.93 -0.40 0.13 16 38 H 0.08 0.43 5.94 -51.93 -0.31 0.12 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.63 7.42 -51.93 -0.39 0.24 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.77 7.80 -51.93 -0.40 0.37 16 43 H 0.35 5.41 8.18 -39.29 -0.32 5.09 16 44 H 0.04 0.58 7.41 -51.93 -0.38 0.20 16 45 H 0.09 1.21 8.06 -51.93 -0.42 0.79 16 46 H 0.37 7.54 5.76 -40.82 -0.24 7.31 16 47 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 50 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.09 1.00 7.00 -51.93 -0.36 0.63 16 LS Contribution 395.24 15.07 5.96 5.96 Total: -1.00 -33.60 395.24 -8.54 -42.14 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -8.82 Total: 11.02 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -0.70 Total: 3.41 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.43 Total: -54.86 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: 0.16 Total: -22.02 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.60 -8.54 -42.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200271539.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.848 kcal (2) G-P(sol) polarization free energy of solvation -33.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds