Wall clock time and date at job start Sat Apr 11 2020 01:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47059 * 2 1 4 4 H 1.08999 * 109.47309 * 54.99473 * 3 2 1 5 5 C 1.53003 * 109.46907 * 294.99769 * 3 2 1 6 6 C 1.52992 * 109.47148 * 174.99761 * 3 2 1 7 7 C 1.50700 * 109.47257 * 184.99859 * 6 3 2 8 8 O 1.21279 * 120.00113 * 0.02562 * 7 6 3 9 9 N 1.34784 * 119.99961 * 180.02562 * 7 6 3 10 10 C 1.46927 * 120.62995 * 359.72079 * 9 7 6 11 11 C 1.52758 * 109.00682 * 233.58186 * 10 9 7 12 12 C 1.53039 * 109.38439 * 305.58958 * 11 10 9 13 13 N 1.46898 * 109.44660 * 181.25519 * 12 11 10 14 14 C 1.46895 * 111.00349 * 84.93830 * 13 12 11 15 15 C 1.50702 * 109.47304 * 179.97438 * 14 13 12 16 16 O 1.21291 * 120.00104 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99592 * 180.02562 * 15 14 13 18 18 C 1.37099 * 119.99737 * 180.02562 * 17 15 14 19 19 H 1.08005 * 119.99932 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00574 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00421 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99390 * 359.97438 * 20 18 17 23 23 H 1.48493 * 109.47299 * 90.00322 * 22 20 18 24 24 H 1.48501 * 109.47050 * 210.00368 * 22 20 18 25 25 H 1.48500 * 109.47601 * 330.00116 * 22 20 18 26 26 C 1.53041 * 109.53647 * 61.24252 * 12 11 10 27 27 C 1.46923 * 120.62964 * 179.97438 * 9 7 6 28 28 H 1.09000 * 109.46811 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46881 * 300.00419 * 1 2 3 30 30 H 1.09003 * 109.46873 * 59.99943 * 1 2 3 31 31 H 1.09002 * 109.47294 * 239.99950 * 2 1 3 32 32 H 1.08998 * 109.46855 * 119.99575 * 2 1 3 33 33 H 1.09005 * 109.46613 * 180.02562 * 5 3 2 34 34 H 1.08993 * 109.47263 * 299.99732 * 5 3 2 35 35 H 1.08998 * 109.47147 * 60.00317 * 5 3 2 36 36 H 1.09004 * 109.47330 * 64.99881 * 6 3 2 37 37 H 1.08997 * 109.47279 * 305.00368 * 6 3 2 38 38 H 1.09003 * 109.58790 * 353.42296 * 10 9 7 39 39 H 1.09007 * 109.58432 * 113.84106 * 10 9 7 40 40 H 1.08998 * 109.56153 * 185.55612 * 11 10 9 41 41 H 1.09003 * 109.38437 * 65.51806 * 11 10 9 42 42 H 1.09000 * 109.45771 * 301.22193 * 12 11 10 43 43 H 1.00900 * 111.00211 * 320.98302 * 13 12 11 44 44 H 1.08993 * 109.47349 * 300.00358 * 14 13 12 45 45 H 1.09001 * 109.47031 * 59.99774 * 14 13 12 46 46 H 0.96996 * 120.00887 * 0.02562 * 17 15 14 47 47 H 0.97002 * 119.99536 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.49638 * 178.68503 * 26 12 11 49 49 H 1.08997 * 109.52468 * 58.59952 * 26 12 11 50 50 H 1.08998 * 109.59009 * 246.15627 * 27 9 7 51 51 H 1.09003 * 109.58381 * 6.44334 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4444 0.1258 7 6 4.0570 2.8634 0.2493 8 8 3.2660 3.7827 0.2383 9 7 5.3762 3.1109 0.3719 10 6 6.3461 2.0074 0.3930 11 6 7.2188 2.1358 1.6401 12 6 7.8506 3.5292 1.6767 13 7 8.7139 3.6439 2.8597 14 6 10.0549 3.1102 2.5865 15 6 10.9102 3.2452 3.8200 16 8 10.4479 3.7372 4.8276 17 7 12.1888 2.8193 3.8033 18 6 12.9667 2.9416 4.9256 19 1 12.5550 3.3797 5.8228 20 6 14.2850 2.5030 4.9084 21 7 15.0308 2.6208 5.9840 22 14 14.9972 1.7460 3.3562 23 1 15.6019 2.8121 2.5179 24 1 16.0394 0.7536 3.7227 25 1 13.9166 1.0702 2.5941 26 6 6.7488 4.5891 1.7449 27 6 5.8713 4.4889 0.4927 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.9991 3.1541 -1.3076 34 1 2.0700 1.5875 -2.1491 35 1 0.5490 2.1252 -1.3970 36 1 4.0030 0.9836 -0.7596 37 1 3.8570 0.8801 1.0113 38 1 5.8159 1.0552 0.4160 39 1 6.9747 2.0564 -0.4962 40 1 8.0044 1.3807 1.6151 41 1 6.6038 1.9917 2.5285 42 1 8.4459 3.6816 0.7764 43 1 8.2979 3.1858 3.6567 44 1 9.9782 2.0586 2.3105 45 1 10.5083 3.6685 1.7675 46 1 12.5586 2.4261 2.9974 47 1 15.9511 2.3142 5.9719 48 1 7.1998 5.5801 1.7944 49 1 6.1376 4.4227 2.6320 50 1 6.4605 4.7440 -0.3881 51 1 5.0278 5.1739 0.5791 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200271539.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:32:48 Heat of formation + Delta-G solvation = -111.594044 kcal Electronic energy + Delta-G solvation = -27713.850059 eV Core-core repulsion = 23839.305000 eV Total energy + Delta-G solvation = -3874.545058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.37700 -40.33316 -39.08357 -37.23661 -36.30640 -35.77443 -33.75273 -32.91236 -31.92924 -31.30046 -28.89770 -28.17379 -26.15413 -25.09557 -24.30700 -23.81450 -21.88382 -21.30797 -20.89415 -20.31397 -19.75512 -18.25639 -17.62836 -17.02065 -16.88660 -16.68662 -16.37917 -15.98700 -15.85944 -15.48428 -15.16083 -15.13004 -14.97921 -14.77433 -14.65637 -14.34623 -14.02154 -13.97436 -13.68786 -13.45075 -13.31458 -13.13489 -12.89299 -12.78733 -12.69835 -12.57384 -12.40159 -12.28025 -12.13681 -11.96852 -11.86987 -11.64843 -11.52464 -11.52332 -11.49694 -11.38829 -10.62745 -10.42775 -10.24138 -9.66184 -9.24464 -8.40475 -6.01794 1.30929 1.37499 1.46194 1.66462 1.97215 2.04623 2.24405 2.73286 3.15945 3.39504 3.53820 3.74624 3.84874 3.96379 3.99825 4.07257 4.14795 4.20004 4.29591 4.35751 4.43795 4.45041 4.51066 4.55920 4.60963 4.66118 4.69088 4.72907 4.76890 4.82562 4.84158 4.92127 4.94026 5.03533 5.15282 5.18880 5.19537 5.25023 5.27550 5.32340 5.51038 5.53922 5.57604 5.63202 5.92719 6.11227 6.38564 6.45510 6.60869 6.89179 7.22529 7.40911 7.98278 8.77256 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.025099 B = 0.001946 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.292506 B =14381.359367 C =14758.920849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.076 4.076 4 H 0.052 0.948 5 C -0.150 4.150 6 C -0.132 4.132 7 C 0.507 3.493 8 O -0.582 6.582 9 N -0.613 5.613 10 C 0.112 3.888 11 C -0.163 4.163 12 C 0.092 3.908 13 N -0.685 5.685 14 C 0.064 3.936 15 C 0.446 3.554 16 O -0.618 6.618 17 N -0.590 5.590 18 C -0.330 4.330 19 H 0.052 0.948 20 C -0.017 4.017 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.258 1.258 24 H -0.276 1.276 25 H -0.227 1.227 26 C -0.114 4.114 27 C 0.116 3.884 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.342 0.658 44 H 0.082 0.918 45 H 0.115 0.885 46 H 0.391 0.609 47 H 0.279 0.721 48 H 0.076 0.924 49 H 0.047 0.953 50 H 0.084 0.916 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.603 -9.251 -22.605 33.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.095 4.095 4 H 0.071 0.929 5 C -0.207 4.207 6 C -0.171 4.171 7 C 0.297 3.703 8 O -0.463 6.463 9 N -0.346 5.346 10 C -0.011 4.011 11 C -0.203 4.203 12 C -0.018 4.018 13 N -0.316 5.316 14 C -0.068 4.068 15 C 0.234 3.766 16 O -0.502 6.502 17 N -0.232 5.232 18 C -0.460 4.460 19 H 0.071 0.929 20 C -0.215 4.215 21 N -0.576 5.576 22 Si 0.787 3.213 23 H -0.182 1.182 24 H -0.201 1.201 25 H -0.150 1.150 26 C -0.153 4.153 27 C -0.007 4.007 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.161 0.839 44 H 0.100 0.900 45 H 0.133 0.867 46 H 0.226 0.774 47 H 0.088 0.912 48 H 0.094 0.906 49 H 0.066 0.934 50 H 0.102 0.898 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.936 -7.809 -21.952 32.695 hybrid contribution 0.704 -0.760 0.345 1.092 sum -22.232 -8.569 -21.607 32.165 Atomic orbital electron populations 1.21828 0.95947 1.01908 1.01642 1.21562 0.96029 0.94773 1.02875 1.20898 0.93284 0.96808 0.98520 0.92919 1.21929 1.01285 1.00698 0.96771 1.21851 0.97196 0.92162 1.05903 1.21338 0.81488 0.92658 0.74769 1.90648 1.55216 1.48268 1.52132 1.48322 1.06307 1.08010 1.71971 1.21819 0.91069 0.89923 0.98273 1.22591 1.00267 0.98367 0.99101 1.21645 0.93055 0.93908 0.93167 1.60133 1.01809 1.62608 1.07024 1.21660 0.89709 1.00962 0.94441 1.21108 0.82698 0.81655 0.91120 1.90552 1.73646 1.49049 1.36975 1.42017 1.11188 1.56904 1.13069 1.19004 0.94297 1.40334 0.92333 0.92942 1.26164 0.95650 0.97621 1.02099 1.69816 1.09203 1.47628 1.30965 0.85336 0.79524 0.79006 0.77454 1.18247 1.20141 1.15004 1.21799 0.96169 1.00067 0.97289 1.21537 0.97875 0.83339 0.97950 0.91943 0.93533 0.92605 0.90656 0.91268 0.93501 0.92089 0.92647 0.86433 0.87229 0.87252 0.89024 0.89063 0.92243 0.88557 0.83877 0.90017 0.86739 0.77371 0.91172 0.90576 0.93398 0.89765 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.67 71.98 0.70 -0.89 16 2 C -0.11 -1.08 5.40 30.60 0.17 -0.91 16 3 C -0.08 -1.04 2.04 -10.79 -0.02 -1.06 16 4 H 0.05 0.98 7.95 -2.39 -0.02 0.96 16 5 C -0.15 -2.28 8.69 71.98 0.63 -1.65 16 6 C -0.13 -1.47 3.52 29.85 0.11 -1.36 16 7 C 0.51 9.49 7.41 87.66 0.65 10.14 16 8 O -0.58 -15.85 13.38 -3.03 -0.04 -15.89 16 9 N -0.61 -9.54 2.98 -819.64 -2.44 -11.98 16 10 C 0.11 1.03 6.31 86.22 0.54 1.58 16 11 C -0.16 -2.16 5.31 30.53 0.16 -2.00 16 12 C 0.09 1.66 2.43 44.94 0.11 1.77 16 13 N -0.68 -18.65 5.87 -495.46 -2.91 -21.56 16 14 C 0.06 1.79 5.96 85.56 0.51 2.30 16 15 C 0.45 19.55 7.82 87.66 0.69 20.23 16 16 O -0.62 -34.06 15.78 -3.06 -0.05 -34.11 16 17 N -0.59 -27.06 5.09 -306.98 -1.56 -28.62 16 18 C -0.33 -19.20 10.16 84.04 0.85 -18.35 16 19 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 20 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 21 N -0.94 -56.14 13.96 21.66 0.30 -55.84 16 22 Si 0.97 37.73 27.74 68.60 1.90 39.63 16 23 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 24 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 25 H -0.23 -7.22 6.52 99.48 0.65 -6.57 16 26 C -0.11 -2.26 5.69 30.69 0.17 -2.09 16 27 C 0.12 2.04 6.44 86.38 0.56 2.60 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.58 6.57 -2.39 -0.02 0.56 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.05 0.98 5.95 -2.38 -0.01 0.97 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.05 0.80 6.56 -2.39 -0.02 0.78 16 36 H 0.12 0.74 7.95 -2.38 -0.02 0.72 16 37 H 0.11 0.88 7.68 -2.39 -0.02 0.86 16 38 H 0.11 0.53 5.94 -2.39 -0.01 0.52 16 39 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 40 H 0.09 1.01 7.42 -2.39 -0.02 0.99 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.10 1.45 7.80 -2.39 -0.02 1.43 16 43 H 0.34 10.36 8.18 -89.69 -0.73 9.63 16 44 H 0.08 1.72 7.41 -2.39 -0.02 1.70 16 45 H 0.11 2.63 8.06 -2.39 -0.02 2.61 16 46 H 0.39 14.51 5.76 -92.71 -0.53 13.98 16 47 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 48 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.07 1.61 7.00 -2.39 -0.02 1.59 16 Total: -1.00 -81.50 395.24 1.09 -80.41 By element: Atomic # 1 Polarization: 38.54 SS G_CDS: -0.40 Total: 38.14 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 6.28 Total: 9.83 kcal Atomic # 7 Polarization: -111.39 SS G_CDS: -6.61 Total: -118.00 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -0.09 Total: -50.00 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 1.90 Total: 39.63 kcal Total: -81.50 1.09 -80.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200271539.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.188 kcal (2) G-P(sol) polarization free energy of solvation -81.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds