Wall clock time and date at job start Sat Apr 11 2020 01:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47110 * 2 1 4 4 H 1.09000 * 109.46773 * 305.00220 * 3 2 1 5 5 C 1.53001 * 109.47251 * 64.99760 * 3 2 1 6 6 C 1.50699 * 109.47073 * 185.00137 * 3 2 1 7 7 O 1.21281 * 119.99753 * 263.40811 * 6 3 2 8 8 N 1.34776 * 119.99877 * 83.41091 * 6 3 2 9 9 C 1.46916 * 120.63490 * 4.76179 * 8 6 3 10 10 C 1.52757 * 109.01088 * 233.58846 * 9 8 6 11 11 C 1.53043 * 109.38193 * 305.58321 * 10 9 8 12 12 C 1.52997 * 109.46071 * 181.25927 * 11 10 9 13 13 N 1.46894 * 109.47029 * 64.93526 * 12 11 10 14 14 C 1.46899 * 111.00005 * 179.97438 * 13 12 11 15 15 C 1.50710 * 109.47151 * 180.02562 * 14 13 12 16 16 O 1.21284 * 119.99911 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99786 * 180.02562 * 15 14 13 18 18 C 1.37094 * 119.99622 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00319 * 359.97438 * 18 17 15 20 20 C 1.38958 * 120.00041 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99641 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00123 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46891 * 60.00294 * 22 20 18 24 24 H 1.48494 * 109.46899 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47418 * 300.00308 * 22 20 18 26 26 C 1.53047 * 109.53551 * 61.24139 * 11 10 9 27 27 C 1.46927 * 120.62619 * 185.04076 * 8 6 3 28 28 H 1.08998 * 109.47241 * 299.99956 * 1 2 3 29 29 H 1.09002 * 109.47043 * 59.99972 * 1 2 3 30 30 H 1.09004 * 109.46785 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47241 * 240.00044 * 2 1 3 32 32 H 1.09002 * 109.47043 * 120.00028 * 2 1 3 33 33 H 1.08994 * 109.47352 * 173.91907 * 5 3 2 34 34 H 1.08996 * 109.47098 * 293.91909 * 5 3 2 35 35 H 1.09002 * 109.46860 * 53.92200 * 5 3 2 36 36 H 1.09000 * 109.58682 * 353.42436 * 9 8 6 37 37 H 1.09006 * 109.59006 * 113.84252 * 9 8 6 38 38 H 1.08998 * 109.56663 * 185.55492 * 10 9 8 39 39 H 1.08996 * 109.36128 * 65.49302 * 10 9 8 40 40 H 1.08999 * 109.46185 * 301.22471 * 11 10 9 41 41 H 1.09001 * 109.47178 * 184.93405 * 12 11 10 42 42 H 1.08996 * 109.47126 * 304.93665 * 12 11 10 43 43 H 1.00899 * 111.00204 * 56.04549 * 13 12 11 44 44 H 1.08996 * 109.47250 * 299.99599 * 14 13 12 45 45 H 1.08999 * 109.47555 * 60.00115 * 14 13 12 46 46 H 0.97001 * 120.00069 * 359.97438 * 17 15 14 47 47 H 0.96998 * 119.99796 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.49434 * 178.68251 * 26 11 10 49 49 H 1.08995 * 109.52384 * 58.60255 * 26 11 10 50 50 H 1.09000 * 109.58938 * 246.15196 * 27 8 6 51 51 H 1.09001 * 109.58659 * 6.44174 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5419 1.4443 -0.1239 7 8 4.2321 1.5352 0.8692 8 7 4.1180 1.3449 -1.3382 9 6 3.2984 1.3389 -2.5575 10 6 3.6522 0.1072 -3.3889 11 6 5.1608 0.0838 -3.6453 12 6 5.5130 -1.1322 -4.5044 13 7 4.8943 -0.9915 -5.8292 14 6 5.2121 -2.1433 -6.6837 15 6 4.5623 -1.9635 -8.0316 16 8 3.8993 -0.9734 -8.2578 17 7 4.7171 -2.9033 -8.9851 18 6 4.1256 -2.7398 -10.2110 19 1 3.5351 -1.8582 -10.4125 20 6 4.2856 -3.7085 -11.1943 21 7 5.0036 -4.7814 -10.9490 22 14 3.4789 -3.4862 -12.8645 23 1 3.9882 -2.2437 -13.4986 24 1 3.7999 -4.6508 -13.7281 25 1 2.0071 -3.3876 -12.6942 26 6 5.9054 -0.0018 -2.3109 27 6 5.5774 1.2344 -1.4676 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0890 3.1164 1.3551 34 1 0.5502 2.2220 1.3466 35 1 1.9782 1.5286 2.1516 36 1 2.2427 1.3052 -2.2879 37 1 3.5006 2.2389 -3.1383 38 1 3.1221 0.1446 -4.3405 39 1 3.3616 -0.7915 -2.8450 40 1 5.4546 0.9944 -4.1673 41 1 6.5955 -1.1984 -4.6141 42 1 5.1406 -2.0368 -4.0237 43 1 5.1739 -0.1274 -6.2689 44 1 6.2925 -2.2160 -6.8085 45 1 4.8380 -3.0552 -6.2184 46 1 5.2471 -3.6952 -8.8040 47 1 5.1150 -5.4578 -11.6353 48 1 6.9789 -0.0420 -2.4954 49 1 5.5942 -0.8995 -1.7770 50 1 5.9694 2.1256 -1.9577 51 1 6.0253 1.1341 -0.4789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204528447.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:32:58 Heat of formation + Delta-G solvation = -95.264837 kcal Electronic energy + Delta-G solvation = -27871.278140 eV Core-core repulsion = 23997.441169 eV Total energy + Delta-G solvation = -3873.836971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.67772 -38.54039 -37.95943 -35.84435 -35.54494 -33.92775 -32.77322 -31.36261 -31.20221 -29.96539 -28.17508 -26.20839 -25.25134 -23.94140 -23.51461 -22.55131 -21.50654 -20.50861 -19.25926 -18.83821 -17.91267 -17.66003 -16.20343 -16.10628 -15.67834 -15.41518 -15.23924 -14.83253 -14.60762 -14.37469 -14.31703 -13.99340 -13.94918 -13.68569 -13.25601 -13.16569 -13.05343 -12.78003 -12.63186 -12.42544 -12.36007 -12.05387 -11.82280 -11.80509 -11.57495 -11.51817 -11.43453 -11.14975 -11.03534 -11.03246 -10.89021 -10.62085 -10.60148 -10.45573 -10.22551 -9.80380 -9.51384 -8.85762 -8.47205 -8.06420 -7.97197 -6.42995 -3.83922 2.40061 2.76609 3.18893 3.24723 3.28970 3.89643 4.06670 4.17257 4.28355 4.45890 4.50654 4.53510 4.65992 4.81810 4.87274 4.93592 5.01040 5.06763 5.13215 5.16311 5.22924 5.25579 5.27945 5.28588 5.46338 5.49793 5.52791 5.56660 5.62236 5.66105 5.68949 5.69381 5.76348 5.81722 5.83702 5.88526 5.93108 5.97446 5.98619 6.13149 6.23935 6.28404 6.39542 7.17829 7.20356 7.53569 7.64766 7.96736 8.04722 8.59856 9.16352 9.53003 10.04370 10.74649 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.021421 B = 0.002010 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.805800 B =13929.016705 C =14685.777211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.113 4.113 4 H 0.094 0.906 5 C -0.133 4.133 6 C 0.519 3.481 7 O -0.547 6.547 8 N -0.610 5.610 9 C 0.101 3.899 10 C -0.123 4.123 11 C -0.083 4.083 12 C 0.064 3.936 13 N -0.667 5.667 14 C 0.051 3.949 15 C 0.441 3.559 16 O -0.584 6.584 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.128 4.128 27 C 0.112 3.888 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.027 0.973 42 H 0.070 0.930 43 H 0.348 0.652 44 H 0.042 0.958 45 H 0.085 0.915 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.074 0.926 49 H 0.067 0.933 50 H 0.066 0.934 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.348 9.242 21.540 23.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.134 4.134 4 H 0.112 0.888 5 C -0.191 4.191 6 C 0.308 3.692 7 O -0.424 6.424 8 N -0.344 5.344 9 C -0.021 4.021 10 C -0.161 4.161 11 C -0.102 4.102 12 C -0.066 4.066 13 N -0.299 5.299 14 C -0.082 4.082 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.167 4.167 27 C -0.010 4.010 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.045 0.955 42 H 0.088 0.912 43 H 0.167 0.833 44 H 0.060 0.940 45 H 0.103 0.897 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.093 0.907 49 H 0.086 0.914 50 H 0.084 0.916 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.985 9.534 21.975 24.139 hybrid contribution 0.998 -0.421 -1.172 1.596 sum -1.987 9.113 20.803 22.798 Atomic orbital electron populations 1.21810 0.94756 1.02193 1.02166 1.21488 0.96678 0.93956 1.03027 1.21411 0.91872 0.99052 1.01076 0.88841 1.21662 1.00944 1.00583 0.95891 1.20726 0.90662 0.75324 0.82495 1.90667 1.65105 1.49966 1.36658 1.48186 1.07384 1.72602 1.06193 1.21859 0.95416 0.99477 0.85374 1.21826 0.96199 0.97028 1.01033 1.21114 0.95629 0.98688 0.94771 1.22001 0.96054 0.98213 0.90342 1.60073 1.62450 1.05010 1.02393 1.21662 0.97934 0.94978 0.93622 1.19816 0.86294 0.85563 0.85710 1.90512 1.44146 1.30851 1.81315 1.41865 1.46201 1.20076 1.11899 1.19651 1.28413 1.06608 0.88283 0.87978 1.25273 0.97356 0.95219 1.00137 1.69604 1.39689 1.09522 1.35503 0.85910 0.79547 0.77650 0.81066 1.19919 1.20990 1.19875 1.21945 1.00578 0.98305 0.95875 1.21568 0.80146 0.97861 1.01430 0.92297 0.92373 0.92259 0.91235 0.91330 0.92462 0.91788 0.91722 0.89487 0.91176 0.88537 0.91784 0.90952 0.95527 0.91167 0.83292 0.93999 0.89705 0.77466 0.91815 0.90724 0.91420 0.91608 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.67 37.16 0.36 -0.56 16 2 C -0.11 -0.84 5.21 -26.73 -0.14 -0.98 16 3 C -0.11 -0.91 1.87 -91.77 -0.17 -1.08 16 4 H 0.09 0.62 6.36 -51.93 -0.33 0.29 16 5 C -0.13 -1.03 8.20 37.16 0.30 -0.73 16 6 C 0.52 5.64 6.82 -10.99 -0.07 5.57 16 7 O -0.55 -7.84 15.63 5.56 0.09 -7.75 16 8 N -0.61 -5.82 2.98 -173.03 -0.52 -6.33 16 9 C 0.10 0.82 6.08 -3.94 -0.02 0.80 16 10 C -0.12 -1.16 5.25 -26.83 -0.14 -1.30 16 11 C -0.08 -0.79 2.29 -90.57 -0.21 -0.99 16 12 C 0.06 0.72 5.07 -3.83 -0.02 0.70 16 13 N -0.67 -10.02 5.56 -115.06 -0.64 -10.65 16 14 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 15 C 0.44 10.21 7.82 -10.98 -0.09 10.13 16 16 O -0.58 -15.51 15.78 5.55 0.09 -15.42 16 17 N -0.56 -14.16 5.29 -10.96 -0.06 -14.21 16 18 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 19 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 20 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 21 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 22 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 26 C -0.13 -1.09 5.36 -26.60 -0.14 -1.23 16 27 C 0.11 1.03 6.42 -3.71 -0.02 1.01 16 28 H 0.06 0.33 6.70 -51.93 -0.35 -0.02 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.54 7.79 -51.93 -0.40 0.13 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.38 6.87 -51.93 -0.36 0.02 16 35 H 0.06 0.57 8.07 -51.93 -0.42 0.15 16 36 H 0.09 0.60 5.19 -51.93 -0.27 0.33 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.10 1.09 7.71 -51.93 -0.40 0.69 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.35 5.43 8.43 -39.29 -0.33 5.10 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 47 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.09 0.93 7.03 -51.93 -0.37 0.57 16 LS Contribution 402.09 15.07 6.06 6.06 Total: -1.00 -32.16 402.09 -8.89 -41.05 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -8.98 Total: 10.86 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -0.64 Total: 4.19 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.49 Total: -54.87 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: 0.17 Total: -23.17 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.16 -8.89 -41.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204528447.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.210 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds