Wall clock time and date at job start Sat Apr 11 2020 01:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47110 * 2 1 4 4 H 1.09000 * 109.46773 * 305.00220 * 3 2 1 5 5 C 1.53001 * 109.47251 * 64.99760 * 3 2 1 6 6 C 1.50699 * 109.47073 * 185.00137 * 3 2 1 7 7 O 1.21281 * 119.99753 * 263.40811 * 6 3 2 8 8 N 1.34776 * 119.99877 * 83.41091 * 6 3 2 9 9 C 1.46916 * 120.63490 * 4.76179 * 8 6 3 10 10 C 1.52757 * 109.01088 * 233.58846 * 9 8 6 11 11 C 1.53043 * 109.38193 * 305.58321 * 10 9 8 12 12 C 1.52997 * 109.46071 * 181.25927 * 11 10 9 13 13 N 1.46894 * 109.47029 * 64.93526 * 12 11 10 14 14 C 1.46899 * 111.00005 * 179.97438 * 13 12 11 15 15 C 1.50710 * 109.47151 * 180.02562 * 14 13 12 16 16 O 1.21284 * 119.99911 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99786 * 180.02562 * 15 14 13 18 18 C 1.37094 * 119.99622 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00319 * 359.97438 * 18 17 15 20 20 C 1.38958 * 120.00041 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99641 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00123 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46891 * 60.00294 * 22 20 18 24 24 H 1.48494 * 109.46899 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47418 * 300.00308 * 22 20 18 26 26 C 1.53047 * 109.53551 * 61.24139 * 11 10 9 27 27 C 1.46927 * 120.62619 * 185.04076 * 8 6 3 28 28 H 1.08998 * 109.47241 * 299.99956 * 1 2 3 29 29 H 1.09002 * 109.47043 * 59.99972 * 1 2 3 30 30 H 1.09004 * 109.46785 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47241 * 240.00044 * 2 1 3 32 32 H 1.09002 * 109.47043 * 120.00028 * 2 1 3 33 33 H 1.08994 * 109.47352 * 173.91907 * 5 3 2 34 34 H 1.08996 * 109.47098 * 293.91909 * 5 3 2 35 35 H 1.09002 * 109.46860 * 53.92200 * 5 3 2 36 36 H 1.09000 * 109.58682 * 353.42436 * 9 8 6 37 37 H 1.09006 * 109.59006 * 113.84252 * 9 8 6 38 38 H 1.08998 * 109.56663 * 185.55492 * 10 9 8 39 39 H 1.08996 * 109.36128 * 65.49302 * 10 9 8 40 40 H 1.08999 * 109.46185 * 301.22471 * 11 10 9 41 41 H 1.09001 * 109.47178 * 184.93405 * 12 11 10 42 42 H 1.08996 * 109.47126 * 304.93665 * 12 11 10 43 43 H 1.00899 * 111.00204 * 56.04549 * 13 12 11 44 44 H 1.08996 * 109.47250 * 299.99599 * 14 13 12 45 45 H 1.08999 * 109.47555 * 60.00115 * 14 13 12 46 46 H 0.97001 * 120.00069 * 359.97438 * 17 15 14 47 47 H 0.96998 * 119.99796 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.49434 * 178.68251 * 26 11 10 49 49 H 1.08995 * 109.52384 * 58.60255 * 26 11 10 50 50 H 1.09000 * 109.58938 * 246.15196 * 27 8 6 51 51 H 1.09001 * 109.58659 * 6.44174 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5419 1.4443 -0.1239 7 8 4.2321 1.5352 0.8692 8 7 4.1180 1.3449 -1.3382 9 6 3.2984 1.3389 -2.5575 10 6 3.6522 0.1072 -3.3889 11 6 5.1608 0.0838 -3.6453 12 6 5.5130 -1.1322 -4.5044 13 7 4.8943 -0.9915 -5.8292 14 6 5.2121 -2.1433 -6.6837 15 6 4.5623 -1.9635 -8.0316 16 8 3.8993 -0.9734 -8.2578 17 7 4.7171 -2.9033 -8.9851 18 6 4.1256 -2.7398 -10.2110 19 1 3.5351 -1.8582 -10.4125 20 6 4.2856 -3.7085 -11.1943 21 7 5.0036 -4.7814 -10.9490 22 14 3.4789 -3.4862 -12.8645 23 1 3.9882 -2.2437 -13.4986 24 1 3.7999 -4.6508 -13.7281 25 1 2.0071 -3.3876 -12.6942 26 6 5.9054 -0.0018 -2.3109 27 6 5.5774 1.2344 -1.4676 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0890 3.1164 1.3551 34 1 0.5502 2.2220 1.3466 35 1 1.9782 1.5286 2.1516 36 1 2.2427 1.3052 -2.2879 37 1 3.5006 2.2389 -3.1383 38 1 3.1221 0.1446 -4.3405 39 1 3.3616 -0.7915 -2.8450 40 1 5.4546 0.9944 -4.1673 41 1 6.5955 -1.1984 -4.6141 42 1 5.1406 -2.0368 -4.0237 43 1 5.1739 -0.1274 -6.2689 44 1 6.2925 -2.2160 -6.8085 45 1 4.8380 -3.0552 -6.2184 46 1 5.2471 -3.6952 -8.8040 47 1 5.1150 -5.4578 -11.6353 48 1 6.9789 -0.0420 -2.4954 49 1 5.5942 -0.8995 -1.7770 50 1 5.9694 2.1256 -1.9577 51 1 6.0253 1.1341 -0.4789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204528447.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:32:57 Heat of formation + Delta-G solvation = -116.658860 kcal Electronic energy + Delta-G solvation = -27872.205854 eV Core-core repulsion = 23997.441169 eV Total energy + Delta-G solvation = -3874.764685 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.47353 -40.15608 -39.03015 -36.71096 -36.53125 -35.83950 -33.80204 -33.20928 -32.08322 -30.55856 -29.35887 -27.44158 -26.31820 -25.28964 -24.25401 -23.44536 -22.25477 -21.38580 -20.91966 -19.90212 -19.59594 -18.47535 -17.75480 -16.97297 -16.91293 -16.48955 -16.31305 -16.00956 -15.87430 -15.43537 -15.33923 -15.31779 -15.03848 -14.67766 -14.25376 -14.19861 -13.92957 -13.82761 -13.57443 -13.44686 -13.19988 -13.14002 -13.03085 -12.89234 -12.69754 -12.63830 -12.43990 -12.42228 -12.14954 -12.12189 -11.84209 -11.69488 -11.58991 -11.48906 -11.40918 -11.38931 -10.62357 -10.32324 -10.00491 -9.65205 -9.26884 -8.45533 -5.94237 1.40829 1.42714 1.53584 1.57742 2.02351 2.07080 2.30047 2.94398 3.21899 3.46755 3.55023 3.77733 3.82878 3.85370 3.95637 4.03802 4.16470 4.24901 4.33524 4.38662 4.46320 4.47771 4.52363 4.54320 4.57357 4.59266 4.69083 4.71321 4.76982 4.83286 4.90169 4.94757 4.99762 5.04251 5.05214 5.09910 5.13729 5.19293 5.30998 5.35794 5.41708 5.45402 5.50164 5.62931 5.91072 6.12733 6.40178 6.45450 6.61257 7.13630 7.15237 7.57850 8.12811 8.71586 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.021421 B = 0.002010 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.805800 B =13929.016705 C =14685.777211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.109 4.109 4 H 0.113 0.887 5 C -0.131 4.131 6 C 0.513 3.487 7 O -0.588 6.588 8 N -0.608 5.608 9 C 0.104 3.896 10 C -0.117 4.117 11 C -0.077 4.077 12 C 0.067 3.933 13 N -0.676 5.676 14 C 0.065 3.935 15 C 0.438 3.562 16 O -0.621 6.621 17 N -0.575 5.575 18 C -0.333 4.333 19 H 0.080 0.920 20 C -0.015 4.015 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.272 1.272 26 C -0.117 4.117 27 C 0.110 3.890 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.038 0.962 42 H 0.072 0.928 43 H 0.344 0.656 44 H 0.063 0.937 45 H 0.101 0.899 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.088 0.912 49 H 0.061 0.939 50 H 0.076 0.924 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.705 9.296 21.476 23.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C -0.130 4.130 4 H 0.131 0.869 5 C -0.188 4.188 6 C 0.303 3.697 7 O -0.469 6.469 8 N -0.340 5.340 9 C -0.018 4.018 10 C -0.156 4.156 11 C -0.096 4.096 12 C -0.062 4.062 13 N -0.308 5.308 14 C -0.067 4.067 15 C 0.226 3.774 16 O -0.507 6.507 17 N -0.212 5.212 18 C -0.463 4.463 19 H 0.098 0.902 20 C -0.214 4.214 21 N -0.562 5.562 22 Si 0.817 3.183 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.156 4.156 27 C -0.012 4.012 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.057 0.943 42 H 0.090 0.910 43 H 0.162 0.838 44 H 0.081 0.919 45 H 0.119 0.881 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.107 0.893 49 H 0.080 0.920 50 H 0.094 0.906 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.330 9.572 21.913 24.143 hybrid contribution 1.133 -0.417 -1.106 1.638 sum -2.197 9.155 20.807 22.838 Atomic orbital electron populations 1.21798 0.93417 1.02539 1.02889 1.21449 0.97736 0.93271 1.02282 1.21462 0.89902 0.99736 1.01936 0.86913 1.21651 1.02254 0.99716 0.95210 1.21266 0.91767 0.74515 0.82189 1.90645 1.66209 1.52027 1.37999 1.48283 1.07714 1.71699 1.06339 1.21924 0.96092 0.99166 0.84638 1.21733 0.96027 0.97516 1.00282 1.21065 0.95734 0.97981 0.94865 1.22049 0.96515 0.99121 0.88476 1.60072 1.63443 1.04020 1.03314 1.21516 0.98445 0.96447 0.90341 1.20886 0.85097 0.84168 0.87248 1.90482 1.45623 1.32189 1.82451 1.41949 1.46620 1.20800 1.11845 1.19633 1.29821 1.06693 0.90138 0.90219 1.26056 0.97537 0.94650 1.03196 1.69668 1.40025 1.09861 1.36640 0.84984 0.78516 0.77951 0.76873 1.19646 1.19633 1.19680 1.21845 1.01256 0.97619 0.94891 1.21602 0.80095 0.98665 1.00883 0.91626 0.91570 0.92156 0.91543 0.92561 0.93288 0.89549 0.93215 0.87946 0.90327 0.90177 0.92142 0.90717 0.94335 0.90955 0.83758 0.91879 0.88102 0.77037 0.91342 0.89347 0.92005 0.90577 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.67 71.98 0.70 -0.83 16 2 C -0.11 -1.50 5.21 30.60 0.16 -1.34 16 3 C -0.11 -1.62 1.87 -11.54 -0.02 -1.64 16 4 H 0.11 1.23 6.36 -2.39 -0.02 1.21 16 5 C -0.13 -1.92 8.20 71.98 0.59 -1.33 16 6 C 0.51 10.90 6.82 87.66 0.60 11.49 16 7 O -0.59 -17.15 15.63 -3.03 -0.05 -17.20 16 8 N -0.61 -10.94 2.98 -819.75 -2.44 -13.38 16 9 C 0.10 1.51 6.08 86.22 0.52 2.03 16 10 C -0.12 -2.05 5.25 30.53 0.16 -1.89 16 11 C -0.08 -1.33 2.29 -10.76 -0.02 -1.35 16 12 C 0.07 1.38 5.07 86.30 0.44 1.81 16 13 N -0.68 -19.32 5.56 -517.95 -2.88 -22.20 16 14 C 0.07 2.12 6.17 85.56 0.53 2.65 16 15 C 0.44 20.30 7.82 87.66 0.69 20.99 16 16 O -0.62 -33.39 15.78 -3.04 -0.05 -33.44 16 17 N -0.57 -29.08 5.29 -306.98 -1.62 -30.70 16 18 C -0.33 -18.71 9.68 84.04 0.81 -17.90 16 19 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 20 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 21 N -0.92 -49.37 13.05 21.67 0.28 -49.09 16 22 Si 0.99 42.46 29.55 68.60 2.03 44.49 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 24 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 C -0.12 -1.80 5.36 30.68 0.16 -1.63 16 27 C 0.11 1.91 6.42 86.36 0.55 2.46 16 28 H 0.06 0.59 6.70 -2.39 -0.02 0.57 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.07 0.95 7.79 -2.39 -0.02 0.93 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 0.85 6.87 -2.39 -0.02 0.84 16 35 H 0.05 0.87 8.07 -2.39 -0.02 0.85 16 36 H 0.10 1.18 5.19 -2.39 -0.01 1.16 16 37 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.08 1.72 7.71 -2.39 -0.02 1.70 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.34 10.36 8.43 -89.69 -0.76 9.60 16 44 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 45 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 46 H 0.40 19.06 7.90 -92.71 -0.73 18.32 16 47 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 48 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.08 1.57 7.03 -2.39 -0.02 1.55 16 Total: -1.00 -69.96 402.09 1.04 -68.92 By element: Atomic # 1 Polarization: 39.96 SS G_CDS: -0.56 Total: 39.39 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 6.33 Total: 13.20 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -6.66 Total: -115.37 kcal Atomic # 8 Polarization: -50.54 SS G_CDS: -0.10 Total: -50.64 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -69.96 1.04 -68.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204528447.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.737 kcal (2) G-P(sol) polarization free energy of solvation -69.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds