Wall clock time and date at job start Sat Apr 11 2020 01:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46921 * 2 1 4 4 H 1.09001 * 109.47375 * 55.00127 * 3 2 1 5 5 C 1.53006 * 109.47164 * 295.00093 * 3 2 1 6 6 C 1.52997 * 109.47232 * 174.99994 * 3 2 1 7 7 C 1.50699 * 109.47337 * 184.99945 * 6 3 2 8 8 O 1.21290 * 120.00038 * 359.97438 * 7 6 3 9 9 N 1.34781 * 120.00326 * 180.02562 * 7 6 3 10 10 C 1.46492 * 120.00279 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.27543 * 34.29435 * 10 9 7 12 12 C 1.53992 * 110.30998 * 272.20889 * 10 9 7 13 13 N 1.48129 * 106.94401 * 242.33375 * 12 10 9 14 14 C 1.46898 * 110.95180 * 214.09737 * 13 12 10 15 15 C 1.50700 * 109.47403 * 307.37299 * 14 13 12 16 16 O 1.21290 * 119.99858 * 0.02562 * 15 14 13 17 17 N 1.34776 * 119.99661 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99713 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99824 * 0.02562 * 18 17 15 20 20 C 1.38948 * 119.99987 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00334 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99898 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47575 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46968 * 120.00533 * 22 20 18 25 25 H 1.48496 * 109.47545 * 240.00149 * 22 20 18 26 26 C 1.48530 * 105.82372 * 334.59438 * 13 12 10 27 27 C 1.54595 * 110.30966 * 156.38558 * 10 9 7 28 28 H 1.08998 * 110.72273 * 22.51923 * 27 10 9 29 29 C 1.52997 * 110.72427 * 259.40899 * 27 10 9 30 30 H 1.08998 * 109.47141 * 299.99499 * 1 2 3 31 31 H 1.09000 * 109.47312 * 60.00379 * 1 2 3 32 32 H 1.09004 * 109.46964 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47359 * 240.00048 * 2 1 3 34 34 H 1.09000 * 109.47312 * 119.99621 * 2 1 3 35 35 H 1.09001 * 109.46998 * 299.99705 * 5 3 2 36 36 H 1.09000 * 109.47050 * 59.99996 * 5 3 2 37 37 H 1.09001 * 109.46801 * 180.02562 * 5 3 2 38 38 H 1.09004 * 109.47346 * 305.00019 * 6 3 2 39 39 H 1.09002 * 109.47196 * 64.99793 * 6 3 2 40 40 H 0.96995 * 119.99853 * 359.97438 * 9 7 6 41 41 H 1.09001 * 109.91736 * 1.65913 * 12 10 9 42 42 H 1.09001 * 109.91915 * 122.95654 * 12 10 9 43 43 H 1.09006 * 109.46983 * 67.37502 * 14 13 12 44 44 H 1.09006 * 109.47303 * 187.37113 * 14 13 12 45 45 H 0.96995 * 120.00489 * 0.02562 * 17 15 14 46 46 H 0.96995 * 120.00366 * 179.97438 * 21 20 18 47 47 H 1.09010 * 110.66186 * 280.82157 * 26 13 12 48 48 H 1.08998 * 110.81040 * 157.76511 * 26 13 12 49 49 H 1.08994 * 109.47376 * 59.99878 * 29 27 10 50 50 H 1.09004 * 109.47053 * 180.02562 * 29 27 10 51 51 H 1.08997 * 109.47406 * 299.99695 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6351 2.1266 -1.3074 6 6 3.5648 1.4444 0.1257 7 6 4.0569 2.8634 0.2492 8 8 3.2659 3.7828 0.2373 9 7 5.3761 3.1110 0.3718 10 6 5.8545 4.4904 0.4913 11 1 5.1354 5.0929 1.0464 12 6 6.0944 5.0957 -0.9042 13 7 7.5377 5.4172 -0.9929 14 6 7.7581 6.6253 -1.7991 15 6 7.0677 6.4739 -3.1301 16 8 6.4522 5.4596 -3.3821 17 7 7.1334 7.4660 -4.0400 18 6 6.5058 7.3281 -5.2511 19 1 5.9584 6.4246 -5.4758 20 6 6.5731 8.3511 -6.1889 21 7 7.2387 9.4506 -5.9153 22 14 5.7173 8.1635 -7.8387 23 1 5.0414 6.8425 -7.8985 24 1 4.7096 9.2424 -7.9992 25 1 6.7201 8.2566 -8.9300 26 6 7.9942 5.6200 0.4059 27 6 7.2332 4.5216 1.1900 28 1 7.7366 3.5596 1.0930 29 6 7.0851 4.9068 2.6632 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.0698 1.5876 -2.1492 36 1 0.5488 2.1252 -1.3969 37 1 1.9989 3.1541 -1.3075 38 1 3.8571 0.8801 1.0113 39 1 4.0029 0.9836 -0.7596 40 1 6.0087 2.3758 0.3810 41 1 5.8266 4.3719 -1.6739 42 1 5.5025 6.0033 -1.0220 43 1 7.3519 7.4907 -1.2754 44 1 8.8273 6.7658 -1.9583 45 1 7.6254 8.2773 -3.8383 46 1 7.2860 10.1646 -6.5702 47 1 7.7138 6.6113 0.7621 48 1 9.0714 5.4741 0.4866 49 1 6.4513 4.1775 3.1676 50 1 8.0676 4.9230 3.1351 51 1 6.6310 5.8950 2.7365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206909134.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:33:22 Heat of formation + Delta-G solvation = -87.902101 kcal Electronic energy + Delta-G solvation = -28466.494822 eV Core-core repulsion = 24592.977123 eV Total energy + Delta-G solvation = -3873.517699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.24574 -39.03560 -37.68757 -36.37253 -34.41537 -33.81560 -32.56277 -31.23767 -30.93455 -28.99583 -27.73947 -26.97367 -25.27472 -24.35218 -23.57029 -21.45876 -20.63548 -20.24444 -19.70455 -19.04824 -17.79608 -16.96838 -16.71411 -15.92282 -15.59625 -15.28415 -14.90784 -14.87849 -14.56362 -14.25343 -14.12944 -13.89506 -13.75640 -13.25972 -13.21005 -13.03407 -12.65606 -12.55802 -12.30050 -12.04076 -12.00945 -11.84649 -11.77401 -11.53106 -11.47585 -11.29690 -11.24116 -11.06442 -10.94064 -10.78551 -10.72952 -10.69837 -10.66824 -10.32252 -10.21059 -9.58710 -9.49601 -8.93769 -8.38407 -7.98722 -7.90667 -6.40472 -3.81052 2.73111 3.17493 3.21861 3.28031 3.35522 3.91399 4.08049 4.27145 4.43095 4.62735 4.64630 4.71845 4.76188 4.95900 5.04487 5.07550 5.12251 5.26384 5.32034 5.33927 5.40574 5.43248 5.52654 5.56352 5.56744 5.58752 5.65726 5.71672 5.78647 5.81617 5.83286 5.91788 5.93148 5.96052 5.96481 6.08607 6.13700 6.16463 6.29367 6.31912 6.45711 6.56848 6.79071 7.20307 7.27015 7.56886 7.57641 8.07533 8.33259 8.62788 9.19441 9.55308 10.06888 10.77413 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.009687 B = 0.003183 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.846072 B = 8794.610348 C =11352.612153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.075 4.075 4 H 0.076 0.924 5 C -0.156 4.156 6 C -0.138 4.138 7 C 0.512 3.488 8 O -0.535 6.535 9 N -0.719 5.719 10 C 0.133 3.867 11 H 0.091 0.909 12 C 0.043 3.957 13 N -0.495 5.495 14 C 0.035 3.965 15 C 0.441 3.559 16 O -0.580 6.580 17 N -0.563 5.563 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.036 3.964 27 C -0.100 4.100 28 H 0.087 0.913 29 C -0.142 4.142 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.399 0.601 41 H 0.106 0.894 42 H 0.045 0.955 43 H 0.049 0.951 44 H 0.091 0.909 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.046 0.954 48 H 0.083 0.917 49 H 0.056 0.944 50 H 0.059 0.941 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.798 -14.001 17.440 22.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.094 4.094 4 H 0.094 0.906 5 C -0.213 4.213 6 C -0.178 4.178 7 C 0.299 3.701 8 O -0.412 6.412 9 N -0.371 5.371 10 C 0.028 3.972 11 H 0.109 0.891 12 C -0.086 4.086 13 N -0.219 5.219 14 C -0.097 4.097 15 C 0.227 3.773 16 O -0.464 6.464 17 N -0.200 5.200 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.092 4.092 27 C -0.119 4.119 28 H 0.105 0.895 29 C -0.199 4.199 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.233 0.767 41 H 0.124 0.876 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.109 0.891 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.064 0.936 48 H 0.102 0.898 49 H 0.075 0.925 50 H 0.078 0.922 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.482 -14.252 16.862 22.351 hybrid contribution -0.041 0.960 -0.462 1.066 sum -3.523 -13.292 16.400 21.402 Atomic orbital electron populations 1.21808 0.95809 1.01300 1.02159 1.21594 0.96146 0.96232 1.01773 1.20906 0.92686 0.95801 0.99979 0.90574 1.22010 1.01033 1.02535 0.95755 1.21774 0.97921 0.94040 1.04036 1.20703 0.82131 0.91667 0.75611 1.90684 1.54678 1.46649 1.49172 1.46069 1.07517 1.08576 1.74904 1.22043 0.95144 0.83189 0.96837 0.89122 1.23338 0.87943 1.01375 0.95901 1.64700 1.16118 1.32615 1.08517 1.22116 1.01633 0.91409 0.94492 1.19731 0.86095 0.85387 0.86098 1.90499 1.46666 1.29779 1.79445 1.41855 1.47244 1.16621 1.14242 1.19744 1.28793 1.03504 0.90613 0.87890 1.25260 0.97596 0.95063 1.00058 1.69617 1.41841 1.06439 1.36447 0.85808 0.78829 0.78527 0.81235 1.19213 1.20754 1.20742 1.23346 1.00255 0.96914 0.88696 1.22317 0.94910 1.00075 0.94607 0.89452 1.21769 1.01826 1.01631 0.94712 0.92818 0.92274 0.93009 0.91919 0.92215 0.93269 0.92841 0.90464 0.89245 0.88808 0.76668 0.87600 0.93664 0.93293 0.89104 0.77483 0.91935 0.93594 0.89826 0.92465 0.92200 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.67 37.16 0.36 -0.84 16 2 C -0.12 -0.96 5.40 -26.73 -0.14 -1.11 16 3 C -0.07 -0.77 2.04 -90.62 -0.18 -0.95 16 4 H 0.08 0.87 7.96 -51.93 -0.41 0.45 16 5 C -0.16 -1.92 8.69 37.16 0.32 -1.59 16 6 C -0.14 -1.31 5.17 -27.89 -0.14 -1.45 16 7 C 0.51 6.72 7.55 -10.98 -0.08 6.63 16 8 O -0.54 -9.17 13.64 5.55 0.08 -9.09 16 9 N -0.72 -8.46 5.02 -52.49 -0.26 -8.73 16 10 C 0.13 1.80 2.89 -66.58 -0.19 1.60 16 11 H 0.09 1.33 7.31 -51.93 -0.38 0.95 16 12 C 0.04 0.77 4.87 -2.63 -0.01 0.75 16 13 N -0.50 -8.31 5.27 -231.69 -1.22 -9.53 16 14 C 0.04 0.65 5.48 -4.98 -0.03 0.62 16 15 C 0.44 10.62 7.36 -10.99 -0.08 10.54 16 16 O -0.58 -15.75 13.37 5.55 0.07 -15.67 16 17 N -0.56 -14.54 5.29 -10.96 -0.06 -14.60 16 18 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 19 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 22 Si 0.93 21.42 29.55 -169.99 -5.02 16.39 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C 0.04 0.45 6.01 -1.90 -0.01 0.44 16 27 C -0.10 -1.05 3.36 -88.76 -0.30 -1.35 16 28 H 0.09 0.84 7.75 -51.93 -0.40 0.44 16 29 C -0.14 -1.21 9.17 37.16 0.34 -0.87 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.60 6.56 -51.93 -0.34 0.26 16 37 H 0.08 1.20 5.95 -51.93 -0.31 0.89 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.40 3.60 8.36 -40.82 -0.34 3.25 16 41 H 0.11 2.25 6.53 -51.93 -0.34 1.91 16 42 H 0.04 0.91 7.60 -51.93 -0.39 0.52 16 43 H 0.05 0.83 7.89 -51.93 -0.41 0.42 16 44 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 46 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 47 H 0.05 0.55 7.74 -51.92 -0.40 0.15 16 48 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 LS Contribution 400.58 15.07 6.04 6.04 Total: -1.00 -33.10 400.58 -9.03 -42.13 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -8.98 Total: 12.87 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -0.40 Total: 4.35 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.82 Total: -57.02 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: 0.15 Total: -24.77 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.10 -9.03 -42.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206909134.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.775 kcal (2) G-P(sol) polarization free energy of solvation -33.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds