Wall clock time and date at job start Sat Apr 11 2020 01:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46921 * 2 1 4 4 H 1.09001 * 109.47375 * 55.00127 * 3 2 1 5 5 C 1.53006 * 109.47164 * 295.00093 * 3 2 1 6 6 C 1.52997 * 109.47232 * 174.99994 * 3 2 1 7 7 C 1.50699 * 109.47337 * 184.99945 * 6 3 2 8 8 O 1.21290 * 120.00038 * 359.97438 * 7 6 3 9 9 N 1.34781 * 120.00326 * 180.02562 * 7 6 3 10 10 C 1.46492 * 120.00279 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.27543 * 34.29435 * 10 9 7 12 12 C 1.53992 * 110.30998 * 272.20889 * 10 9 7 13 13 N 1.48129 * 106.94401 * 242.33375 * 12 10 9 14 14 C 1.46898 * 110.95180 * 214.09737 * 13 12 10 15 15 C 1.50700 * 109.47403 * 307.37299 * 14 13 12 16 16 O 1.21290 * 119.99858 * 0.02562 * 15 14 13 17 17 N 1.34776 * 119.99661 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99713 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99824 * 0.02562 * 18 17 15 20 20 C 1.38948 * 119.99987 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00334 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99898 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47575 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46968 * 120.00533 * 22 20 18 25 25 H 1.48496 * 109.47545 * 240.00149 * 22 20 18 26 26 C 1.48530 * 105.82372 * 334.59438 * 13 12 10 27 27 C 1.54595 * 110.30966 * 156.38558 * 10 9 7 28 28 H 1.08998 * 110.72273 * 22.51923 * 27 10 9 29 29 C 1.52997 * 110.72427 * 259.40899 * 27 10 9 30 30 H 1.08998 * 109.47141 * 299.99499 * 1 2 3 31 31 H 1.09000 * 109.47312 * 60.00379 * 1 2 3 32 32 H 1.09004 * 109.46964 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47359 * 240.00048 * 2 1 3 34 34 H 1.09000 * 109.47312 * 119.99621 * 2 1 3 35 35 H 1.09001 * 109.46998 * 299.99705 * 5 3 2 36 36 H 1.09000 * 109.47050 * 59.99996 * 5 3 2 37 37 H 1.09001 * 109.46801 * 180.02562 * 5 3 2 38 38 H 1.09004 * 109.47346 * 305.00019 * 6 3 2 39 39 H 1.09002 * 109.47196 * 64.99793 * 6 3 2 40 40 H 0.96995 * 119.99853 * 359.97438 * 9 7 6 41 41 H 1.09001 * 109.91736 * 1.65913 * 12 10 9 42 42 H 1.09001 * 109.91915 * 122.95654 * 12 10 9 43 43 H 1.09006 * 109.46983 * 67.37502 * 14 13 12 44 44 H 1.09006 * 109.47303 * 187.37113 * 14 13 12 45 45 H 0.96995 * 120.00489 * 0.02562 * 17 15 14 46 46 H 0.96995 * 120.00366 * 179.97438 * 21 20 18 47 47 H 1.09010 * 110.66186 * 280.82157 * 26 13 12 48 48 H 1.08998 * 110.81040 * 157.76511 * 26 13 12 49 49 H 1.08994 * 109.47376 * 59.99878 * 29 27 10 50 50 H 1.09004 * 109.47053 * 180.02562 * 29 27 10 51 51 H 1.08997 * 109.47406 * 299.99695 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6351 2.1266 -1.3074 6 6 3.5648 1.4444 0.1257 7 6 4.0569 2.8634 0.2492 8 8 3.2659 3.7828 0.2373 9 7 5.3761 3.1110 0.3718 10 6 5.8545 4.4904 0.4913 11 1 5.1354 5.0929 1.0464 12 6 6.0944 5.0957 -0.9042 13 7 7.5377 5.4172 -0.9929 14 6 7.7581 6.6253 -1.7991 15 6 7.0677 6.4739 -3.1301 16 8 6.4522 5.4596 -3.3821 17 7 7.1334 7.4660 -4.0400 18 6 6.5058 7.3281 -5.2511 19 1 5.9584 6.4246 -5.4758 20 6 6.5731 8.3511 -6.1889 21 7 7.2387 9.4506 -5.9153 22 14 5.7173 8.1635 -7.8387 23 1 5.0414 6.8425 -7.8985 24 1 4.7096 9.2424 -7.9992 25 1 6.7201 8.2566 -8.9300 26 6 7.9942 5.6200 0.4059 27 6 7.2332 4.5216 1.1900 28 1 7.7366 3.5596 1.0930 29 6 7.0851 4.9068 2.6632 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.0698 1.5876 -2.1492 36 1 0.5488 2.1252 -1.3969 37 1 1.9989 3.1541 -1.3075 38 1 3.8571 0.8801 1.0113 39 1 4.0029 0.9836 -0.7596 40 1 6.0087 2.3758 0.3810 41 1 5.8266 4.3719 -1.6739 42 1 5.5025 6.0033 -1.0220 43 1 7.3519 7.4907 -1.2754 44 1 8.8273 6.7658 -1.9583 45 1 7.6254 8.2773 -3.8383 46 1 7.2860 10.1646 -6.5702 47 1 7.7138 6.6113 0.7621 48 1 9.0714 5.4741 0.4866 49 1 6.4513 4.1775 3.1676 50 1 8.0676 4.9230 3.1351 51 1 6.6310 5.8950 2.7365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206909134.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:33:21 Heat of formation + Delta-G solvation = -112.660209 kcal Electronic energy + Delta-G solvation = -28467.568414 eV Core-core repulsion = 24592.977123 eV Total energy + Delta-G solvation = -3874.591291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.39600 -40.47098 -39.25157 -37.25459 -36.10775 -35.38698 -33.66222 -33.30158 -31.70213 -30.19840 -28.98923 -28.08461 -26.84056 -25.54771 -24.64228 -22.67238 -21.77142 -21.20242 -20.92168 -20.56715 -19.85059 -18.03428 -17.80221 -17.61551 -16.71250 -16.58650 -16.49404 -16.18677 -15.80035 -15.57466 -15.48959 -15.10870 -14.99881 -14.58746 -14.23198 -14.03822 -14.00996 -13.56744 -13.50440 -13.35253 -13.23341 -13.07493 -12.95403 -12.81069 -12.76963 -12.60326 -12.45017 -12.27144 -12.18343 -12.14556 -11.83911 -11.80056 -11.64858 -11.55283 -11.51832 -11.39923 -10.66815 -10.30814 -10.07446 -9.98995 -9.38769 -8.50634 -5.99368 1.32858 1.37914 1.52356 1.69320 1.99956 2.24783 2.25626 2.82244 3.15681 3.23249 3.56452 3.69173 3.78298 3.85206 3.98394 4.02096 4.17953 4.25464 4.32090 4.35705 4.44771 4.46331 4.49837 4.59441 4.60881 4.67327 4.70899 4.72219 4.81518 4.83722 4.86251 4.91423 4.99865 5.12071 5.13468 5.17150 5.19972 5.23981 5.31789 5.35806 5.37478 5.49559 5.56426 5.63713 5.78278 5.90563 6.06127 6.56184 6.62192 7.08794 7.34598 7.50919 8.07071 8.67184 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.009687 B = 0.003183 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.846072 B = 8794.610348 C =11352.612153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.073 4.073 4 H 0.062 0.938 5 C -0.155 4.155 6 C -0.130 4.130 7 C 0.503 3.497 8 O -0.583 6.583 9 N -0.709 5.709 10 C 0.141 3.859 11 H 0.076 0.924 12 C 0.052 3.948 13 N -0.506 5.506 14 C 0.046 3.954 15 C 0.436 3.564 16 O -0.616 6.616 17 N -0.573 5.573 18 C -0.332 4.332 19 H 0.076 0.924 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.992 3.008 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.267 1.267 26 C 0.034 3.966 27 C -0.085 4.085 28 H 0.106 0.894 29 C -0.136 4.136 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.037 0.963 38 H 0.127 0.873 39 H 0.106 0.894 40 H 0.415 0.585 41 H 0.063 0.937 42 H 0.006 0.994 43 H 0.065 0.935 44 H 0.117 0.883 45 H 0.396 0.604 46 H 0.278 0.722 47 H 0.053 0.947 48 H 0.110 0.890 49 H 0.063 0.937 50 H 0.082 0.918 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.386 -15.476 19.091 24.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.092 4.092 4 H 0.080 0.920 5 C -0.212 4.212 6 C -0.170 4.170 7 C 0.292 3.708 8 O -0.463 6.463 9 N -0.361 5.361 10 C 0.034 3.966 11 H 0.094 0.906 12 C -0.078 4.078 13 N -0.230 5.230 14 C -0.085 4.085 15 C 0.223 3.777 16 O -0.502 6.502 17 N -0.210 5.210 18 C -0.462 4.462 19 H 0.094 0.906 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.816 3.184 23 H -0.200 1.200 24 H -0.196 1.196 25 H -0.192 1.192 26 C -0.093 4.093 27 C -0.104 4.104 28 H 0.124 0.876 29 C -0.193 4.193 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.145 0.855 39 H 0.124 0.876 40 H 0.253 0.747 41 H 0.082 0.918 42 H 0.024 0.976 43 H 0.083 0.917 44 H 0.135 0.865 45 H 0.230 0.770 46 H 0.088 0.912 47 H 0.071 0.929 48 H 0.128 0.872 49 H 0.082 0.918 50 H 0.101 0.899 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.021 -15.735 18.540 24.401 hybrid contribution -0.491 1.431 -0.975 1.800 sum -2.512 -14.304 17.565 22.791 Atomic orbital electron populations 1.21829 0.95862 1.02024 1.01598 1.21551 0.96086 0.94369 1.03029 1.20882 0.93368 0.97045 0.97863 0.91991 1.21972 1.01313 1.00449 0.97477 1.21826 0.97177 0.91702 1.06274 1.21482 0.82073 0.92855 0.74418 1.90672 1.55935 1.48450 1.51281 1.45985 1.07646 1.08420 1.74063 1.21852 0.96856 0.83709 0.94140 0.90598 1.23071 0.88400 0.98818 0.97481 1.64677 1.15038 1.32012 1.11319 1.22025 1.02260 0.92814 0.91417 1.20811 0.85098 0.84188 0.87589 1.90486 1.47999 1.31148 1.80614 1.41921 1.47640 1.17302 1.14167 1.19658 1.30536 1.03441 0.92551 0.90618 1.26040 0.97792 0.94402 1.03009 1.69671 1.41977 1.06759 1.37655 0.84885 0.78129 0.78213 0.77187 1.20000 1.19575 1.19194 1.23546 1.01846 0.98055 0.85837 1.22314 0.92172 1.00494 0.95406 0.87561 1.21735 1.03258 1.01404 0.92925 0.92998 0.93310 0.91604 0.91336 0.90164 0.93041 0.92331 0.94429 0.85501 0.87585 0.74721 0.91832 0.97555 0.91717 0.86470 0.76992 0.91221 0.92867 0.87232 0.91824 0.89914 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.67 71.98 0.70 -1.56 16 2 C -0.11 -1.59 5.40 30.59 0.17 -1.43 16 3 C -0.07 -1.46 2.04 -10.79 -0.02 -1.48 16 4 H 0.06 1.43 7.96 -2.39 -0.02 1.41 16 5 C -0.15 -4.02 8.69 71.98 0.63 -3.39 16 6 C -0.13 -2.30 5.17 29.85 0.15 -2.14 16 7 C 0.50 13.41 7.55 87.66 0.66 14.08 16 8 O -0.58 -21.32 13.64 -3.06 -0.04 -21.36 16 9 N -0.71 -16.38 5.02 -438.38 -2.20 -18.58 16 10 C 0.14 3.80 2.89 45.87 0.13 3.94 16 11 H 0.08 2.30 7.31 -2.39 -0.02 2.28 16 12 C 0.05 1.93 4.87 86.40 0.42 2.36 16 13 N -0.51 -16.78 5.27 -886.93 -4.67 -21.46 16 14 C 0.05 1.69 5.48 85.56 0.47 2.16 16 15 C 0.44 21.80 7.36 87.66 0.64 22.45 16 16 O -0.62 -35.45 13.37 -3.06 -0.04 -35.49 16 17 N -0.57 -30.68 5.29 -306.99 -1.62 -32.30 16 18 C -0.33 -19.58 9.68 84.04 0.81 -18.77 16 19 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 20 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 21 N -0.92 -50.83 13.05 21.66 0.28 -50.55 16 22 Si 0.99 44.32 29.55 68.60 2.03 46.35 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 26 C 0.03 0.76 6.01 86.65 0.52 1.28 16 27 C -0.08 -1.57 3.36 -9.59 -0.03 -1.61 16 28 H 0.11 1.63 7.75 -2.39 -0.02 1.62 16 29 C -0.14 -1.88 9.17 71.98 0.66 -1.22 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.79 6.57 -2.39 -0.02 0.78 16 32 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.39 6.56 -2.39 -0.02 1.38 16 37 H 0.04 1.27 5.95 -2.39 -0.01 1.26 16 38 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.42 6.71 8.36 -92.71 -0.78 5.93 16 41 H 0.06 2.91 6.53 -2.39 -0.02 2.89 16 42 H 0.01 0.26 7.60 -2.39 -0.02 0.25 16 43 H 0.06 2.17 7.89 -2.38 -0.02 2.15 16 44 H 0.12 3.68 8.14 -2.38 -0.02 3.66 16 45 H 0.40 20.07 7.90 -92.71 -0.73 19.34 16 46 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 47 H 0.05 1.13 7.74 -2.38 -0.02 1.12 16 48 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.05 0.79 8.11 -2.39 -0.02 0.77 16 Total: -1.00 -77.65 400.58 -0.47 -78.12 By element: Atomic # 1 Polarization: 41.41 SS G_CDS: -0.58 Total: 40.83 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 6.38 Total: 14.42 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -8.21 Total: -122.88 kcal Atomic # 8 Polarization: -56.77 SS G_CDS: -0.08 Total: -56.85 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -77.65 -0.47 -78.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206909134.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.536 kcal (2) G-P(sol) polarization free energy of solvation -77.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds