Wall clock time and date at job start Sat Apr 11 2020 01:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47227 * 2 1 4 4 H 1.09002 * 109.47045 * 55.00081 * 3 2 1 5 5 C 1.53002 * 109.47092 * 295.00214 * 3 2 1 6 6 C 1.50703 * 109.47084 * 175.00047 * 3 2 1 7 7 O 1.21278 * 119.99985 * 0.02562 * 6 3 2 8 8 N 1.34779 * 119.99944 * 180.02562 * 6 3 2 9 9 C 1.46499 * 119.99872 * 180.02562 * 8 6 3 10 10 C 1.50701 * 109.46992 * 179.97438 * 9 8 6 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46921 * 120.63059 * 359.72315 * 12 10 9 14 14 C 1.53629 * 108.54224 * 126.36706 * 13 12 10 15 15 C 1.53041 * 109.24036 * 54.85265 * 14 13 12 16 16 C 1.52999 * 109.45914 * 178.48863 * 15 14 13 17 17 N 1.46503 * 109.47518 * 295.07366 * 16 15 14 18 18 C 1.36937 * 120.00069 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99885 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99857 * 179.97438 * 18 17 16 21 21 N 1.31616 * 119.99801 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99900 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47327 * 90.00104 * 22 20 18 24 24 H 1.48500 * 109.47118 * 210.00298 * 22 20 18 25 25 H 1.48503 * 109.47203 * 330.00212 * 22 20 18 26 26 C 1.53038 * 109.54157 * 298.51402 * 15 14 13 27 27 C 1.46926 * 120.62707 * 180.02562 * 12 10 9 28 28 H 1.08996 * 109.46934 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46896 * 300.00110 * 1 2 3 30 30 H 1.09002 * 109.46986 * 59.99895 * 1 2 3 31 31 H 1.09001 * 109.46896 * 239.99890 * 2 1 3 32 32 H 1.09000 * 109.47254 * 120.00558 * 2 1 3 33 33 H 1.09002 * 109.47067 * 299.99853 * 5 3 2 34 34 H 1.08992 * 109.47461 * 60.00154 * 5 3 2 35 35 H 1.09004 * 109.46930 * 179.97438 * 5 3 2 36 36 H 0.97000 * 119.99708 * 359.97438 * 8 6 3 37 37 H 1.09002 * 109.47391 * 59.99686 * 9 8 6 38 38 H 1.09001 * 109.46813 * 299.99742 * 9 8 6 39 39 H 1.08998 * 109.58542 * 246.19788 * 13 12 10 40 40 H 1.08999 * 109.58977 * 6.62636 * 13 12 10 41 41 H 1.08999 * 109.63120 * 294.86485 * 14 13 12 42 42 H 1.09000 * 109.43244 * 174.72381 * 14 13 12 43 43 H 1.08999 * 109.44682 * 58.52952 * 15 14 13 44 44 H 1.09006 * 109.47031 * 55.06916 * 16 15 14 45 45 H 1.09000 * 109.47537 * 175.06906 * 16 15 14 46 46 H 0.96995 * 119.99280 * 359.97438 * 17 16 15 47 47 H 0.97004 * 119.99676 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.49670 * 301.41329 * 26 15 14 49 49 H 1.09002 * 109.52529 * 181.33535 * 26 15 14 50 50 H 1.09003 * 109.58886 * 353.37482 * 27 12 10 51 51 H 1.08992 * 109.58644 * 113.65764 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 3.5420 1.4442 0.1238 7 8 4.1451 0.3951 0.2037 8 7 4.2150 2.6118 0.1458 9 6 5.6750 2.6134 0.2656 10 6 6.1774 4.0343 0.2657 11 8 5.3929 4.9548 0.1752 12 7 7.4983 4.2820 0.3675 13 6 8.4601 3.1776 0.4851 14 6 9.5263 3.3397 -0.6090 15 6 10.1522 4.7321 -0.5010 16 6 11.2412 4.8853 -1.5647 17 7 12.3308 3.9462 -1.2869 18 6 13.4233 3.9017 -2.1114 19 1 13.4818 4.5593 -2.9663 20 6 14.4559 3.0123 -1.8479 21 7 14.3848 2.2114 -0.8059 22 14 15.9464 2.9521 -2.9722 23 1 16.9748 3.9048 -2.4823 24 1 16.5076 1.5773 -2.9770 25 1 15.5418 3.3264 -4.3511 26 6 9.0740 5.7962 -0.7182 27 6 8.0032 5.6618 0.3696 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.0699 1.5875 -2.1492 34 1 0.5490 2.1253 -1.3969 35 1 1.9982 3.1544 -1.3071 36 1 3.7326 3.4509 0.0816 37 1 6.1094 2.0749 -0.5767 38 1 5.9637 2.1255 1.1966 39 1 8.9327 3.2076 1.4669 40 1 7.9428 2.2270 0.3552 41 1 9.0652 3.2232 -1.5898 42 1 10.2990 2.5822 -0.4775 43 1 10.5913 4.8567 0.4888 44 1 10.8210 4.6736 -2.5480 45 1 11.6265 5.9047 -1.5460 46 1 12.2784 3.3560 -0.5190 47 1 15.1062 1.5896 -0.6220 48 1 8.6171 5.6566 -1.6979 49 1 9.5244 6.7874 -0.6647 50 1 7.1842 6.3509 0.1634 51 1 8.4369 5.8906 1.3429 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206935440.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:33:31 Heat of formation + Delta-G solvation = -84.195710 kcal Electronic energy + Delta-G solvation = -27764.485318 eV Core-core repulsion = 23891.128341 eV Total energy + Delta-G solvation = -3873.356978 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.73836 -39.86746 -37.88670 -35.81818 -35.05193 -34.75061 -32.97752 -31.38198 -30.40871 -30.29084 -28.19878 -26.47306 -25.50094 -23.76852 -23.30925 -22.21169 -21.61915 -20.39053 -20.21976 -19.12732 -17.87521 -17.19695 -16.84665 -16.30702 -16.21480 -15.63357 -15.55695 -14.81939 -14.74918 -14.41280 -14.20303 -14.00083 -13.86072 -13.78685 -13.62490 -13.33186 -13.04474 -12.78671 -12.64861 -12.50364 -12.44706 -12.27758 -12.04114 -11.95570 -11.86448 -11.23378 -11.19270 -11.04362 -11.02657 -10.85740 -10.46992 -10.43812 -10.34981 -10.06768 -10.04366 -9.96646 -9.67570 -9.44815 -8.89229 -8.77902 -6.93698 -5.78859 -3.07032 2.28486 2.38589 2.50203 3.08809 3.42322 3.47710 3.49198 4.14572 4.30785 4.41095 4.53518 4.56966 4.76882 4.91497 4.94358 4.96766 4.99712 5.05441 5.08141 5.10254 5.12222 5.21379 5.28910 5.40628 5.43092 5.50297 5.51572 5.58798 5.59752 5.70511 5.71834 5.86763 5.88141 5.88433 5.96730 6.01559 6.07214 6.13258 6.22593 6.33084 6.41265 6.57572 6.76279 6.87699 7.15243 7.20816 7.68520 7.82997 7.93658 8.40497 9.51737 10.09413 10.44075 11.44064 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.018978 B = 0.002066 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.022896 B =13548.730494 C =14486.201097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.109 4.109 4 H 0.098 0.902 5 C -0.148 4.148 6 C 0.518 3.482 7 O -0.539 6.539 8 N -0.719 5.719 9 C 0.099 3.901 10 C 0.511 3.489 11 O -0.548 6.548 12 N -0.601 5.601 13 C 0.100 3.900 14 C -0.125 4.125 15 C -0.095 4.095 16 C 0.158 3.842 17 N -0.732 5.732 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.126 4.126 27 C 0.113 3.887 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.411 0.589 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.018 0.982 45 H 0.019 0.981 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.066 0.934 49 H 0.076 0.924 50 H 0.090 0.910 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.835 1.539 4.114 27.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.130 4.130 4 H 0.116 0.884 5 C -0.205 4.205 6 C 0.304 3.696 7 O -0.415 6.415 8 N -0.374 5.374 9 C -0.028 4.028 10 C 0.299 3.701 11 O -0.427 6.427 12 N -0.334 5.334 13 C -0.022 4.022 14 C -0.163 4.163 15 C -0.113 4.113 16 C 0.030 3.970 17 N -0.376 5.376 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.164 4.164 27 C -0.009 4.009 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.249 0.751 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.109 0.891 43 H 0.091 0.909 44 H 0.036 0.964 45 H 0.037 0.963 46 H 0.217 0.783 47 H 0.065 0.935 48 H 0.085 0.915 49 H 0.095 0.905 50 H 0.109 0.891 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -26.673 1.307 3.983 27.000 hybrid contribution 0.935 0.140 -0.360 1.011 sum -25.738 1.447 3.623 26.032 Atomic orbital electron populations 1.21846 0.95407 1.01975 1.01888 1.21355 0.95402 0.93996 1.03645 1.21345 0.91231 0.99639 1.00797 0.88379 1.21853 1.02482 1.00413 0.95765 1.20746 0.90187 0.83099 0.75553 1.90721 1.70299 1.31349 1.49150 1.45783 1.06384 1.09971 1.75306 1.21126 0.82311 0.94628 1.04780 1.20439 0.82494 0.90924 0.76260 1.90661 1.54877 1.46085 1.51077 1.48114 1.05467 1.08421 1.71357 1.22092 0.90855 0.88716 1.00546 1.22009 0.97641 0.98731 0.97946 1.21316 0.95294 0.93844 1.00896 1.20668 0.87991 0.93564 0.94749 1.42366 1.18520 1.43890 1.32834 1.19231 0.95841 1.16373 1.05603 0.91264 1.24729 0.98851 0.99057 0.98379 1.69649 1.33687 1.25977 1.28946 0.86191 0.83115 0.76843 0.80051 1.21747 1.21769 1.20808 1.21919 0.95874 0.99912 0.98726 1.21682 0.97640 0.82160 0.99441 0.92401 0.92698 0.92394 0.91193 0.91054 0.91920 0.91023 0.91966 0.75114 0.88150 0.88302 0.90527 0.89726 0.91641 0.89092 0.90878 0.96426 0.96349 0.78274 0.93522 0.91543 0.90501 0.89148 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.67 37.16 0.36 -0.47 16 2 C -0.11 -0.79 4.75 -26.73 -0.13 -0.92 16 3 C -0.11 -0.79 2.72 -91.77 -0.25 -1.04 16 4 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 5 C -0.15 -0.88 8.84 37.16 0.33 -0.55 16 6 C 0.52 5.39 7.15 -10.98 -0.08 5.31 16 7 O -0.54 -7.53 15.92 5.56 0.09 -7.44 16 8 N -0.72 -6.99 5.42 -61.47 -0.33 -7.33 16 9 C 0.10 1.00 4.50 -5.19 -0.02 0.98 16 10 C 0.51 5.96 7.77 -10.98 -0.09 5.88 16 11 O -0.55 -7.61 15.08 5.56 0.08 -7.53 16 12 N -0.60 -6.77 2.97 -172.48 -0.51 -7.28 16 13 C 0.10 1.08 6.37 -3.49 -0.02 1.06 16 14 C -0.13 -1.72 5.26 -26.38 -0.14 -1.86 16 15 C -0.09 -1.39 2.19 -90.58 -0.20 -1.59 16 16 C 0.16 3.04 5.65 -4.04 -0.02 3.02 16 17 N -0.73 -17.89 5.32 -59.90 -0.32 -18.21 16 18 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 19 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -27.77 13.06 55.49 0.72 -27.04 16 22 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 C -0.13 -1.52 5.36 -26.59 -0.14 -1.66 16 27 C 0.11 1.26 6.43 -3.69 -0.02 1.24 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.27 6.57 -51.93 -0.34 -0.07 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.61 7.96 -51.93 -0.41 0.20 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.32 6.56 -51.93 -0.34 -0.02 16 35 H 0.06 0.35 7.57 -51.93 -0.39 -0.04 16 36 H 0.41 3.68 6.86 -40.82 -0.28 3.40 16 37 H 0.10 1.02 7.70 -51.93 -0.40 0.62 16 38 H 0.10 0.94 7.93 -51.93 -0.41 0.53 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.78 5.93 -51.93 -0.31 0.48 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.09 1.46 7.15 -51.93 -0.37 1.09 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.38 9.71 6.84 -40.82 -0.28 9.43 16 47 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 50 H 0.09 1.05 7.01 -51.93 -0.36 0.68 16 51 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 400.85 15.07 6.04 6.04 Total: -1.00 -33.04 400.85 -8.86 -41.90 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -8.94 Total: 7.51 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -0.67 Total: 2.13 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.44 Total: -59.87 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.17 Total: -14.97 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.04 -8.86 -41.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206935440.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.292 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds