Wall clock time and date at job start Sat Apr 11 2020 01:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47227 * 2 1 4 4 H 1.09002 * 109.47045 * 55.00081 * 3 2 1 5 5 C 1.53002 * 109.47092 * 295.00214 * 3 2 1 6 6 C 1.50703 * 109.47084 * 175.00047 * 3 2 1 7 7 O 1.21278 * 119.99985 * 0.02562 * 6 3 2 8 8 N 1.34779 * 119.99944 * 180.02562 * 6 3 2 9 9 C 1.46499 * 119.99872 * 180.02562 * 8 6 3 10 10 C 1.50701 * 109.46992 * 179.97438 * 9 8 6 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46921 * 120.63059 * 359.72315 * 12 10 9 14 14 C 1.53629 * 108.54224 * 126.36706 * 13 12 10 15 15 C 1.53041 * 109.24036 * 54.85265 * 14 13 12 16 16 C 1.52999 * 109.45914 * 178.48863 * 15 14 13 17 17 N 1.46503 * 109.47518 * 295.07366 * 16 15 14 18 18 C 1.36937 * 120.00069 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99885 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99857 * 179.97438 * 18 17 16 21 21 N 1.31616 * 119.99801 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99900 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47327 * 90.00104 * 22 20 18 24 24 H 1.48500 * 109.47118 * 210.00298 * 22 20 18 25 25 H 1.48503 * 109.47203 * 330.00212 * 22 20 18 26 26 C 1.53038 * 109.54157 * 298.51402 * 15 14 13 27 27 C 1.46926 * 120.62707 * 180.02562 * 12 10 9 28 28 H 1.08996 * 109.46934 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46896 * 300.00110 * 1 2 3 30 30 H 1.09002 * 109.46986 * 59.99895 * 1 2 3 31 31 H 1.09001 * 109.46896 * 239.99890 * 2 1 3 32 32 H 1.09000 * 109.47254 * 120.00558 * 2 1 3 33 33 H 1.09002 * 109.47067 * 299.99853 * 5 3 2 34 34 H 1.08992 * 109.47461 * 60.00154 * 5 3 2 35 35 H 1.09004 * 109.46930 * 179.97438 * 5 3 2 36 36 H 0.97000 * 119.99708 * 359.97438 * 8 6 3 37 37 H 1.09002 * 109.47391 * 59.99686 * 9 8 6 38 38 H 1.09001 * 109.46813 * 299.99742 * 9 8 6 39 39 H 1.08998 * 109.58542 * 246.19788 * 13 12 10 40 40 H 1.08999 * 109.58977 * 6.62636 * 13 12 10 41 41 H 1.08999 * 109.63120 * 294.86485 * 14 13 12 42 42 H 1.09000 * 109.43244 * 174.72381 * 14 13 12 43 43 H 1.08999 * 109.44682 * 58.52952 * 15 14 13 44 44 H 1.09006 * 109.47031 * 55.06916 * 16 15 14 45 45 H 1.09000 * 109.47537 * 175.06906 * 16 15 14 46 46 H 0.96995 * 119.99280 * 359.97438 * 17 16 15 47 47 H 0.97004 * 119.99676 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.49670 * 301.41329 * 26 15 14 49 49 H 1.09002 * 109.52529 * 181.33535 * 26 15 14 50 50 H 1.09003 * 109.58886 * 353.37482 * 27 12 10 51 51 H 1.08992 * 109.58644 * 113.65764 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 3.5420 1.4442 0.1238 7 8 4.1451 0.3951 0.2037 8 7 4.2150 2.6118 0.1458 9 6 5.6750 2.6134 0.2656 10 6 6.1774 4.0343 0.2657 11 8 5.3929 4.9548 0.1752 12 7 7.4983 4.2820 0.3675 13 6 8.4601 3.1776 0.4851 14 6 9.5263 3.3397 -0.6090 15 6 10.1522 4.7321 -0.5010 16 6 11.2412 4.8853 -1.5647 17 7 12.3308 3.9462 -1.2869 18 6 13.4233 3.9017 -2.1114 19 1 13.4818 4.5593 -2.9663 20 6 14.4559 3.0123 -1.8479 21 7 14.3848 2.2114 -0.8059 22 14 15.9464 2.9521 -2.9722 23 1 16.9748 3.9048 -2.4823 24 1 16.5076 1.5773 -2.9770 25 1 15.5418 3.3264 -4.3511 26 6 9.0740 5.7962 -0.7182 27 6 8.0032 5.6618 0.3696 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.0699 1.5875 -2.1492 34 1 0.5490 2.1253 -1.3969 35 1 1.9982 3.1544 -1.3071 36 1 3.7326 3.4509 0.0816 37 1 6.1094 2.0749 -0.5767 38 1 5.9637 2.1255 1.1966 39 1 8.9327 3.2076 1.4669 40 1 7.9428 2.2270 0.3552 41 1 9.0652 3.2232 -1.5898 42 1 10.2990 2.5822 -0.4775 43 1 10.5913 4.8567 0.4888 44 1 10.8210 4.6736 -2.5480 45 1 11.6265 5.9047 -1.5460 46 1 12.2784 3.3560 -0.5190 47 1 15.1062 1.5896 -0.6220 48 1 8.6171 5.6566 -1.6979 49 1 9.5244 6.7874 -0.6647 50 1 7.1842 6.3509 0.1634 51 1 8.4369 5.8906 1.3429 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206935440.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:33:30 Heat of formation + Delta-G solvation = -105.905719 kcal Electronic energy + Delta-G solvation = -27765.426735 eV Core-core repulsion = 23891.128341 eV Total energy + Delta-G solvation = -3874.298394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.64533 -40.74403 -39.00582 -36.60965 -36.43103 -35.63372 -34.54032 -32.61235 -31.92253 -30.93786 -29.14420 -27.81239 -26.12564 -25.39470 -24.35560 -23.37405 -22.58206 -21.52843 -20.99775 -20.10363 -19.17080 -18.62906 -17.84042 -17.15375 -17.10362 -16.71349 -16.42398 -16.31557 -15.67474 -15.50526 -15.39222 -15.30338 -15.14607 -14.72699 -14.52381 -14.38142 -13.97564 -13.90314 -13.81749 -13.54541 -13.37455 -13.12031 -12.96463 -12.92341 -12.75676 -12.56441 -12.52029 -12.23190 -12.16531 -11.95978 -11.71875 -11.68627 -11.58443 -11.56278 -11.32768 -11.02062 -10.90520 -10.86232 -10.28791 -9.74971 -8.97735 -7.95104 -5.22697 1.36997 1.47394 1.48370 1.56797 1.57062 1.64862 2.27649 2.56066 3.25605 3.38486 3.65532 3.75758 3.78272 3.86040 3.88151 3.98276 4.09117 4.21766 4.25024 4.29740 4.35787 4.40752 4.42150 4.53218 4.58371 4.62653 4.71542 4.73623 4.79371 4.84633 4.94860 4.96213 5.01059 5.03068 5.08234 5.12459 5.16234 5.17856 5.24455 5.28751 5.38096 5.46905 5.51145 5.52940 5.54411 6.23054 6.27992 6.42850 6.90616 7.14077 7.34777 8.11458 8.35282 9.28120 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.018978 B = 0.002066 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.022896 B =13548.730494 C =14486.201097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.104 4.104 4 H 0.119 0.881 5 C -0.144 4.144 6 C 0.515 3.485 7 O -0.580 6.580 8 N -0.714 5.714 9 C 0.100 3.900 10 C 0.515 3.485 11 O -0.569 6.569 12 N -0.600 5.600 13 C 0.108 3.892 14 C -0.120 4.120 15 C -0.085 4.085 16 C 0.156 3.844 17 N -0.742 5.742 18 C -0.246 4.246 19 H 0.072 0.928 20 C -0.074 4.074 21 N -0.966 5.966 22 Si 0.971 3.029 23 H -0.287 1.287 24 H -0.295 1.295 25 H -0.272 1.272 26 C -0.115 4.115 27 C 0.116 3.884 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.416 0.584 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.013 0.987 45 H 0.019 0.981 46 H 0.376 0.624 47 H 0.251 0.749 48 H 0.061 0.939 49 H 0.088 0.912 50 H 0.090 0.910 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.370 2.559 4.131 28.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C -0.125 4.125 4 H 0.137 0.863 5 C -0.202 4.202 6 C 0.303 3.697 7 O -0.459 6.459 8 N -0.369 5.369 9 C -0.028 4.028 10 C 0.303 3.697 11 O -0.450 6.450 12 N -0.332 5.332 13 C -0.014 4.014 14 C -0.159 4.159 15 C -0.104 4.104 16 C 0.029 3.971 17 N -0.385 5.385 18 C -0.378 4.378 19 H 0.090 0.910 20 C -0.266 4.266 21 N -0.617 5.617 22 Si 0.800 3.200 23 H -0.214 1.214 24 H -0.222 1.222 25 H -0.197 1.197 26 C -0.154 4.154 27 C -0.006 4.006 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.255 0.745 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.120 0.880 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.031 0.969 45 H 0.037 0.963 46 H 0.209 0.791 47 H 0.060 0.940 48 H 0.080 0.920 49 H 0.107 0.893 50 H 0.109 0.891 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -28.235 2.379 3.982 28.613 hybrid contribution 1.392 -0.127 -0.392 1.452 sum -26.843 2.252 3.590 27.175 Atomic orbital electron populations 1.21817 0.93496 1.02433 1.02867 1.21332 0.96993 0.93915 1.02126 1.21402 0.88832 0.99881 1.02377 0.86271 1.21855 1.03700 1.00207 0.94411 1.21353 0.91474 0.82463 0.74436 1.90702 1.71352 1.32706 1.51159 1.45790 1.06251 1.10121 1.74707 1.21130 0.82702 0.93695 1.05238 1.20587 0.82328 0.91138 0.75606 1.90653 1.55361 1.46832 1.52112 1.48140 1.05465 1.08581 1.71037 1.22042 0.90098 0.89415 0.99821 1.21893 0.97733 0.97371 0.98870 1.21203 0.94706 0.95403 0.99050 1.20832 0.87932 0.92207 0.96093 1.42547 1.19113 1.44660 1.32172 1.19614 0.96680 1.15771 1.05741 0.91035 1.25513 1.01747 0.99299 1.00066 1.69793 1.34402 1.26855 1.30650 0.85181 0.79722 0.76404 0.78700 1.21411 1.22163 1.19707 1.21824 0.95196 0.99441 0.98941 1.21683 0.97187 0.82109 0.99650 0.92300 0.91714 0.91336 0.92736 0.92661 0.93029 0.89059 0.91491 0.74482 0.88145 0.87436 0.89355 0.88016 0.92251 0.91650 0.91026 0.96885 0.96327 0.79111 0.94001 0.92029 0.89304 0.89132 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.67 71.98 0.70 -0.65 16 2 C -0.11 -1.51 4.75 30.59 0.15 -1.37 16 3 C -0.10 -1.36 2.72 -11.54 -0.03 -1.39 16 4 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 5 C -0.14 -1.46 8.84 71.98 0.64 -0.82 16 6 C 0.51 10.37 7.15 87.66 0.63 11.00 16 7 O -0.58 -16.31 15.92 -3.02 -0.05 -16.35 16 8 N -0.71 -13.06 5.42 -466.78 -2.53 -15.59 16 9 C 0.10 1.90 4.50 85.63 0.39 2.28 16 10 C 0.52 11.17 7.77 87.66 0.68 11.85 16 11 O -0.57 -14.85 15.08 -3.03 -0.05 -14.90 16 12 N -0.60 -12.43 2.97 -818.00 -2.43 -14.86 16 13 C 0.11 2.18 6.37 86.51 0.55 2.73 16 14 C -0.12 -3.26 5.26 30.82 0.16 -3.10 16 15 C -0.08 -2.42 2.19 -10.77 -0.02 -2.44 16 16 C 0.16 5.97 5.65 86.38 0.49 6.46 16 17 N -0.74 -36.64 5.32 -343.43 -1.83 -38.46 16 18 C -0.25 -13.66 9.99 84.03 0.84 -12.82 16 19 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 20 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 21 N -0.97 -58.23 13.06 21.65 0.28 -57.95 16 22 Si 0.97 45.95 29.55 68.60 2.03 47.98 16 23 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 25 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 26 C -0.12 -2.60 5.36 30.68 0.16 -2.44 16 27 C 0.12 2.34 6.43 86.38 0.56 2.89 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.48 6.57 -2.39 -0.02 0.46 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.05 0.96 7.96 -2.39 -0.02 0.94 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.09 0.58 6.56 -2.39 -0.02 0.56 16 35 H 0.07 0.62 7.57 -2.38 -0.02 0.60 16 36 H 0.42 6.83 6.86 -92.71 -0.64 6.19 16 37 H 0.10 1.95 7.70 -2.39 -0.02 1.93 16 38 H 0.11 1.89 7.93 -2.39 -0.02 1.88 16 39 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.10 1.73 5.93 -2.39 -0.01 1.71 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.06 2.13 7.15 -2.39 -0.02 2.12 16 43 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 45 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.38 19.45 6.84 -92.71 -0.63 18.81 16 47 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 48 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 49 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.09 1.90 7.01 -2.39 -0.02 1.89 16 51 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -70.98 400.85 1.43 -69.55 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: -0.35 Total: 32.13 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 6.34 Total: 8.45 kcal Atomic # 7 Polarization: -120.36 SS G_CDS: -6.50 Total: -126.86 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.09 Total: -31.25 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -70.98 1.43 -69.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206935440.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.356 kcal (2) G-P(sol) polarization free energy of solvation -70.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds