Wall clock time and date at job start Sat Apr 11 2020 01:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46964 * 2 1 4 4 H 1.09002 * 109.47271 * 305.00307 * 3 2 1 5 5 C 1.53001 * 109.47347 * 64.99736 * 3 2 1 6 6 C 1.53001 * 109.47129 * 184.99713 * 3 2 1 7 7 C 1.50700 * 109.46939 * 174.99713 * 6 3 2 8 8 O 1.21281 * 120.00155 * 0.02562 * 7 6 3 9 9 N 1.34780 * 119.99912 * 179.97438 * 7 6 3 10 10 C 1.46931 * 120.62702 * 0.02562 * 9 7 6 11 11 C 1.53187 * 108.77274 * 233.58083 * 10 9 7 12 12 C 1.53049 * 109.31497 * 305.36469 * 11 10 9 13 13 C 1.53039 * 109.53353 * 61.36666 * 12 11 10 14 14 H 1.09002 * 109.49751 * 58.58726 * 13 12 11 15 15 N 1.46907 * 109.49602 * 178.65201 * 13 12 11 16 16 C 1.46897 * 110.99762 * 274.93799 * 15 13 12 17 17 C 1.50700 * 109.47026 * 180.02562 * 16 15 13 18 18 O 1.21288 * 120.00043 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99971 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99957 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99903 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00075 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99836 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99992 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47266 * 90.00268 * 24 22 20 26 26 H 1.48503 * 109.47271 * 210.00324 * 24 22 20 27 27 H 1.48500 * 109.47168 * 330.00146 * 24 22 20 28 28 C 1.46925 * 120.63279 * 179.97438 * 9 7 6 29 29 H 1.09001 * 109.46885 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47522 * 300.00171 * 1 2 3 31 31 H 1.08999 * 109.46706 * 60.00088 * 1 2 3 32 32 H 1.08994 * 109.47251 * 240.00264 * 2 1 3 33 33 H 1.09001 * 109.47046 * 119.99500 * 2 1 3 34 34 H 1.09004 * 109.46979 * 299.99885 * 5 3 2 35 35 H 1.08999 * 109.47160 * 59.99825 * 5 3 2 36 36 H 1.09000 * 109.47777 * 180.02562 * 5 3 2 37 37 H 1.08997 * 109.46722 * 55.00256 * 6 3 2 38 38 H 1.08998 * 109.47119 * 294.99987 * 6 3 2 39 39 H 1.09002 * 109.58421 * 113.79367 * 10 9 7 40 40 H 1.08996 * 109.58549 * 353.37147 * 10 9 7 41 41 H 1.09006 * 109.49516 * 185.41853 * 11 10 9 42 42 H 1.08993 * 109.52540 * 65.33473 * 11 10 9 43 43 H 1.08998 * 109.45961 * 301.34644 * 12 11 10 44 44 H 1.08995 * 109.44701 * 181.37889 * 12 11 10 45 45 H 1.00894 * 110.99534 * 150.98116 * 15 13 12 46 46 H 1.09002 * 109.47250 * 299.99661 * 16 15 13 47 47 H 1.08998 * 109.47388 * 59.99939 * 16 15 13 48 48 H 0.96996 * 120.00304 * 359.97438 * 19 17 16 49 49 H 0.97005 * 119.99670 * 179.97438 * 23 22 20 50 50 H 1.09005 * 109.58300 * 6.62965 * 28 9 7 51 51 H 1.08998 * 109.58651 * 246.20905 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5649 1.4444 -0.1257 7 6 4.0569 2.8634 -0.2492 8 8 3.2660 3.7827 -0.2375 9 7 5.3761 3.1109 -0.3718 10 6 6.3465 2.0077 -0.3871 11 6 7.4100 2.2718 0.6833 12 6 8.0261 3.6540 0.4547 13 6 6.9400 4.7251 0.5783 14 1 6.4834 4.6679 1.5665 15 7 7.5381 6.0538 0.3907 16 6 8.0937 6.5636 1.6513 17 6 8.6965 7.9254 1.4202 18 8 8.6666 8.4220 0.3141 19 7 9.2688 8.5914 2.4426 20 6 9.8167 9.8304 2.2325 21 1 9.7901 10.2726 1.2475 22 6 10.4072 10.5168 3.2864 23 7 10.9319 11.7047 3.0850 24 14 10.4539 9.7517 4.9899 25 1 11.6969 8.9531 5.1399 26 1 10.4284 10.8252 6.0156 27 1 9.2735 8.8684 5.1683 28 6 5.8711 4.4889 -0.4938 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5489 2.1253 1.3968 35 1 2.0698 1.5876 2.1492 36 1 1.9981 3.1544 1.3072 37 1 3.8571 0.8801 -1.0112 38 1 4.0029 0.9837 0.7597 39 1 6.8204 1.9516 -1.3671 40 1 5.8360 1.0691 -0.1715 41 1 8.1883 1.5114 0.6182 42 1 6.9495 2.2375 1.6706 43 1 8.4653 3.6955 -0.5420 44 1 8.8003 3.8341 1.2005 45 1 6.8677 6.7005 0.0032 46 1 7.2996 6.6396 2.3941 47 1 8.8638 5.8814 2.0113 48 1 9.2924 8.1944 3.3273 49 1 11.3438 12.1840 3.8209 50 1 5.0469 5.1874 -0.3485 51 1 6.3063 4.6347 -1.4824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207913824.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:33:35 Heat of formation + Delta-G solvation = -85.783995 kcal Electronic energy + Delta-G solvation = -27905.088204 eV Core-core repulsion = 24031.662353 eV Total energy + Delta-G solvation = -3873.425851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.63282 -38.72899 -37.98642 -36.53116 -35.22395 -33.90978 -32.45902 -31.68238 -31.37407 -30.10750 -28.03003 -26.50210 -25.62454 -24.28667 -23.57326 -22.73833 -20.84388 -20.16549 -19.43162 -19.07601 -18.33545 -17.42243 -16.33743 -16.28106 -15.79265 -15.42559 -15.26277 -15.03602 -14.76780 -14.70439 -14.37657 -13.98325 -13.89172 -13.81192 -13.52341 -13.10627 -13.06633 -12.80626 -12.66187 -12.45399 -12.27799 -12.15483 -12.10965 -11.94697 -11.69333 -11.53166 -11.30544 -11.19973 -11.06606 -10.94172 -10.90425 -10.89987 -10.80428 -10.59375 -9.97423 -9.87531 -9.57127 -8.89033 -8.59034 -8.21596 -8.16290 -6.30771 -3.82170 2.39733 2.67005 3.02563 3.06736 3.14953 3.74033 4.04031 4.10591 4.14362 4.37331 4.50086 4.51262 4.63785 4.67609 4.76639 4.80818 4.89373 4.92812 5.05106 5.08069 5.16344 5.21129 5.24202 5.30626 5.34334 5.36815 5.42193 5.48458 5.57975 5.62054 5.62479 5.70227 5.71597 5.73047 5.78231 5.80741 5.88400 5.90903 5.97427 6.07061 6.15795 6.20628 6.25653 7.05639 7.15879 7.52869 7.58510 7.95673 8.14807 8.60005 8.95271 9.42678 9.82829 10.82348 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.021691 B = 0.002092 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.541812 B =13377.982339 C =13700.915177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.077 4.077 4 H 0.078 0.922 5 C -0.155 4.155 6 C -0.136 4.136 7 C 0.514 3.486 8 O -0.536 6.536 9 N -0.611 5.611 10 C 0.106 3.894 11 C -0.135 4.135 12 C -0.110 4.110 13 C 0.075 3.925 14 H 0.045 0.955 15 N -0.661 5.661 16 C 0.050 3.950 17 C 0.450 3.550 18 O -0.564 6.564 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.110 3.890 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.353 0.647 46 H 0.045 0.955 47 H 0.087 0.913 48 H 0.370 0.630 49 H 0.273 0.727 50 H 0.092 0.908 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.599 -28.659 -2.746 32.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.096 4.096 4 H 0.096 0.904 5 C -0.212 4.212 6 C -0.176 4.176 7 C 0.302 3.698 8 O -0.413 6.413 9 N -0.345 5.345 10 C -0.017 4.017 11 C -0.174 4.174 12 C -0.148 4.148 13 C -0.036 4.036 14 H 0.063 0.937 15 N -0.294 5.294 16 C -0.083 4.083 17 C 0.236 3.764 18 O -0.445 6.445 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.013 4.013 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.173 0.827 46 H 0.063 0.937 47 H 0.105 0.895 48 H 0.203 0.797 49 H 0.084 0.916 50 H 0.110 0.890 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.336 -27.857 -3.636 31.540 hybrid contribution -0.415 -0.254 2.030 2.088 sum -14.751 -28.112 -1.606 31.787 Atomic orbital electron populations 1.21809 0.95681 1.01445 1.02176 1.21591 0.96261 0.96037 1.01833 1.20940 0.92637 0.96022 0.99990 0.90373 1.21996 1.01252 1.02162 0.95765 1.21799 0.97823 0.93975 1.03957 1.20743 0.81519 0.91815 0.75675 1.90680 1.54070 1.46702 1.49836 1.48115 1.06061 1.07420 1.72939 1.21809 0.90622 0.89384 0.99905 1.21945 0.98228 0.98247 0.98979 1.21557 0.97666 0.92272 1.03350 1.21847 0.93691 0.90597 0.97440 0.93710 1.60083 1.40097 1.02937 1.26309 1.21745 0.99249 0.96241 0.91082 1.19685 0.84189 0.86938 0.85606 1.90568 1.61183 1.69196 1.23582 1.42203 1.53284 1.18219 1.09307 1.19436 1.32842 0.91549 0.99536 0.86259 1.25038 0.97082 0.95783 0.98268 1.69625 1.37609 1.12164 1.32708 0.86670 0.78690 0.79519 0.84492 1.19598 1.20176 1.19560 1.21726 0.97176 0.83004 0.99382 0.92889 0.92357 0.92695 0.92057 0.91987 0.92667 0.93466 0.90734 0.88986 0.88950 0.90938 0.89726 0.90308 0.91620 0.90731 0.91402 0.82683 0.93742 0.89491 0.79716 0.91620 0.88986 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.67 37.16 0.36 -0.52 16 2 C -0.12 -0.68 5.40 -26.73 -0.14 -0.82 16 3 C -0.08 -0.58 2.04 -90.62 -0.18 -0.77 16 4 H 0.08 0.72 7.96 -51.93 -0.41 0.30 16 5 C -0.15 -1.34 8.69 37.16 0.32 -1.02 16 6 C -0.14 -0.93 3.52 -27.88 -0.10 -1.02 16 7 C 0.51 5.38 7.42 -10.98 -0.08 5.30 16 8 O -0.54 -7.64 13.38 5.56 0.07 -7.56 16 9 N -0.61 -5.82 2.97 -172.74 -0.51 -6.34 16 10 C 0.11 0.68 6.34 -3.71 -0.02 0.66 16 11 C -0.14 -0.94 6.08 -26.61 -0.16 -1.10 16 12 C -0.11 -1.10 5.40 -26.69 -0.14 -1.24 16 13 C 0.08 0.89 2.64 -67.57 -0.18 0.71 16 14 H 0.04 0.55 7.80 -51.93 -0.41 0.15 16 15 N -0.66 -10.17 5.94 -107.84 -0.64 -10.81 16 16 C 0.05 0.83 5.97 -4.98 -0.03 0.80 16 17 C 0.45 10.29 7.82 -10.99 -0.09 10.20 16 18 O -0.56 -15.23 15.78 5.55 0.09 -15.14 16 19 N -0.59 -14.18 5.09 -10.96 -0.06 -14.24 16 20 C -0.30 -8.70 10.16 -14.93 -0.15 -8.85 16 21 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.88 13.96 55.50 0.77 -25.11 16 24 Si 0.88 19.48 27.74 -169.99 -4.71 14.76 16 25 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 27 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 28 C 0.11 1.25 5.70 -3.69 -0.02 1.23 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.35 6.56 -51.93 -0.34 0.01 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.44 6.57 -51.93 -0.34 0.10 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.85 5.95 -51.93 -0.31 0.54 16 37 H 0.09 0.46 7.94 -51.93 -0.41 0.05 16 38 H 0.09 0.50 7.69 -51.93 -0.40 0.10 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.36 5.93 -51.93 -0.31 0.05 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.72 7.43 -51.93 -0.39 0.33 16 45 H 0.35 5.73 8.06 -39.29 -0.32 5.42 16 46 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 47 H 0.09 1.29 7.42 -51.93 -0.39 0.90 16 48 H 0.37 7.80 5.76 -40.82 -0.24 7.57 16 49 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 50 H 0.09 1.21 7.01 -51.93 -0.36 0.84 16 51 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 395.18 15.07 5.96 5.96 Total: -1.00 -34.05 395.18 -8.57 -42.62 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -8.82 Total: 11.26 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -0.72 Total: 4.60 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.43 Total: -56.49 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: 0.16 Total: -22.70 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.76 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.05 -8.57 -42.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207913824.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.166 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds