Wall clock time and date at job start Sat Apr 11 2020 01:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46964 * 2 1 4 4 H 1.09002 * 109.47271 * 305.00307 * 3 2 1 5 5 C 1.53001 * 109.47347 * 64.99736 * 3 2 1 6 6 C 1.53001 * 109.47129 * 184.99713 * 3 2 1 7 7 C 1.50700 * 109.46939 * 174.99713 * 6 3 2 8 8 O 1.21281 * 120.00155 * 0.02562 * 7 6 3 9 9 N 1.34780 * 119.99912 * 179.97438 * 7 6 3 10 10 C 1.46931 * 120.62702 * 0.02562 * 9 7 6 11 11 C 1.53187 * 108.77274 * 233.58083 * 10 9 7 12 12 C 1.53049 * 109.31497 * 305.36469 * 11 10 9 13 13 C 1.53039 * 109.53353 * 61.36666 * 12 11 10 14 14 H 1.09002 * 109.49751 * 58.58726 * 13 12 11 15 15 N 1.46907 * 109.49602 * 178.65201 * 13 12 11 16 16 C 1.46897 * 110.99762 * 274.93799 * 15 13 12 17 17 C 1.50700 * 109.47026 * 180.02562 * 16 15 13 18 18 O 1.21288 * 120.00043 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99971 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99957 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99903 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00075 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99836 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99992 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47266 * 90.00268 * 24 22 20 26 26 H 1.48503 * 109.47271 * 210.00324 * 24 22 20 27 27 H 1.48500 * 109.47168 * 330.00146 * 24 22 20 28 28 C 1.46925 * 120.63279 * 179.97438 * 9 7 6 29 29 H 1.09001 * 109.46885 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47522 * 300.00171 * 1 2 3 31 31 H 1.08999 * 109.46706 * 60.00088 * 1 2 3 32 32 H 1.08994 * 109.47251 * 240.00264 * 2 1 3 33 33 H 1.09001 * 109.47046 * 119.99500 * 2 1 3 34 34 H 1.09004 * 109.46979 * 299.99885 * 5 3 2 35 35 H 1.08999 * 109.47160 * 59.99825 * 5 3 2 36 36 H 1.09000 * 109.47777 * 180.02562 * 5 3 2 37 37 H 1.08997 * 109.46722 * 55.00256 * 6 3 2 38 38 H 1.08998 * 109.47119 * 294.99987 * 6 3 2 39 39 H 1.09002 * 109.58421 * 113.79367 * 10 9 7 40 40 H 1.08996 * 109.58549 * 353.37147 * 10 9 7 41 41 H 1.09006 * 109.49516 * 185.41853 * 11 10 9 42 42 H 1.08993 * 109.52540 * 65.33473 * 11 10 9 43 43 H 1.08998 * 109.45961 * 301.34644 * 12 11 10 44 44 H 1.08995 * 109.44701 * 181.37889 * 12 11 10 45 45 H 1.00894 * 110.99534 * 150.98116 * 15 13 12 46 46 H 1.09002 * 109.47250 * 299.99661 * 16 15 13 47 47 H 1.08998 * 109.47388 * 59.99939 * 16 15 13 48 48 H 0.96996 * 120.00304 * 359.97438 * 19 17 16 49 49 H 0.97005 * 119.99670 * 179.97438 * 23 22 20 50 50 H 1.09005 * 109.58300 * 6.62965 * 28 9 7 51 51 H 1.08998 * 109.58651 * 246.20905 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5649 1.4444 -0.1257 7 6 4.0569 2.8634 -0.2492 8 8 3.2660 3.7827 -0.2375 9 7 5.3761 3.1109 -0.3718 10 6 6.3465 2.0077 -0.3871 11 6 7.4100 2.2718 0.6833 12 6 8.0261 3.6540 0.4547 13 6 6.9400 4.7251 0.5783 14 1 6.4834 4.6679 1.5665 15 7 7.5381 6.0538 0.3907 16 6 8.0937 6.5636 1.6513 17 6 8.6965 7.9254 1.4202 18 8 8.6666 8.4220 0.3141 19 7 9.2688 8.5914 2.4426 20 6 9.8167 9.8304 2.2325 21 1 9.7901 10.2726 1.2475 22 6 10.4072 10.5168 3.2864 23 7 10.9319 11.7047 3.0850 24 14 10.4539 9.7517 4.9899 25 1 11.6969 8.9531 5.1399 26 1 10.4284 10.8252 6.0156 27 1 9.2735 8.8684 5.1683 28 6 5.8711 4.4889 -0.4938 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5489 2.1253 1.3968 35 1 2.0698 1.5876 2.1492 36 1 1.9981 3.1544 1.3072 37 1 3.8571 0.8801 -1.0112 38 1 4.0029 0.9837 0.7597 39 1 6.8204 1.9516 -1.3671 40 1 5.8360 1.0691 -0.1715 41 1 8.1883 1.5114 0.6182 42 1 6.9495 2.2375 1.6706 43 1 8.4653 3.6955 -0.5420 44 1 8.8003 3.8341 1.2005 45 1 6.8677 6.7005 0.0032 46 1 7.2996 6.6396 2.3941 47 1 8.8638 5.8814 2.0113 48 1 9.2924 8.1944 3.3273 49 1 11.3438 12.1840 3.8209 50 1 5.0469 5.1874 -0.3485 51 1 6.3063 4.6347 -1.4824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207913824.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:33:34 Heat of formation + Delta-G solvation = -110.899070 kcal Electronic energy + Delta-G solvation = -27906.177275 eV Core-core repulsion = 24031.662353 eV Total energy + Delta-G solvation = -3874.514922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.41413 -40.36303 -39.03820 -37.17768 -36.41333 -35.82381 -33.78126 -33.23608 -32.05933 -30.97855 -28.79364 -27.93355 -26.43354 -25.62179 -24.47517 -23.51479 -21.60652 -21.34275 -20.81474 -20.33457 -19.75122 -18.23001 -17.79648 -17.20075 -16.92660 -16.62866 -16.52835 -15.98404 -15.77927 -15.59337 -15.36171 -15.17969 -14.96623 -14.76435 -14.57333 -14.32282 -14.15005 -13.95925 -13.80537 -13.47142 -13.35984 -13.31866 -12.95088 -12.79565 -12.73792 -12.43834 -12.37712 -12.18271 -12.00929 -11.94916 -11.81251 -11.64412 -11.57241 -11.53349 -11.49303 -11.38114 -10.67159 -10.47487 -10.27231 -9.69201 -9.41673 -8.43102 -6.04378 1.28769 1.34129 1.43138 1.63934 1.90744 1.93388 2.21433 2.71480 3.12532 3.31557 3.52509 3.77400 3.84107 3.91701 3.99818 4.05249 4.09850 4.15515 4.25463 4.26913 4.36662 4.46335 4.48520 4.51252 4.61841 4.67254 4.69574 4.73210 4.78599 4.82197 4.86227 4.92413 5.00984 5.09171 5.15882 5.19199 5.22100 5.25473 5.33042 5.37301 5.48381 5.51458 5.54702 5.60243 5.87481 5.99917 6.26236 6.44036 6.57070 6.85318 7.20147 7.36567 7.92807 8.74491 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.021691 B = 0.002092 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.541812 B =13377.982339 C =13700.915177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C -0.076 4.076 4 H 0.054 0.946 5 C -0.152 4.152 6 C -0.128 4.128 7 C 0.505 3.495 8 O -0.584 6.584 9 N -0.609 5.609 10 C 0.100 3.900 11 C -0.127 4.127 12 C -0.109 4.109 13 C 0.082 3.918 14 H 0.045 0.955 15 N -0.676 5.676 16 C 0.065 3.935 17 C 0.448 3.552 18 O -0.613 6.613 19 N -0.590 5.590 20 C -0.331 4.331 21 H 0.055 0.945 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.966 3.034 25 H -0.254 1.254 26 H -0.274 1.274 27 H -0.233 1.233 28 C 0.115 3.885 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.041 0.959 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.081 0.919 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.343 0.657 46 H 0.070 0.930 47 H 0.117 0.883 48 H 0.390 0.610 49 H 0.280 0.720 50 H 0.066 0.934 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.599 -33.561 -0.394 36.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.095 4.095 4 H 0.072 0.928 5 C -0.209 4.209 6 C -0.167 4.167 7 C 0.296 3.704 8 O -0.465 6.465 9 N -0.342 5.342 10 C -0.021 4.021 11 C -0.166 4.166 12 C -0.148 4.148 13 C -0.028 4.028 14 H 0.063 0.937 15 N -0.309 5.309 16 C -0.067 4.067 17 C 0.236 3.764 18 O -0.498 6.498 19 N -0.231 5.231 20 C -0.460 4.460 21 H 0.073 0.927 22 C -0.214 4.214 23 N -0.573 5.573 24 Si 0.785 3.215 25 H -0.179 1.179 26 H -0.200 1.200 27 H -0.157 1.157 28 C -0.009 4.009 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.099 0.901 40 H 0.136 0.864 41 H 0.122 0.878 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.161 0.839 46 H 0.088 0.912 47 H 0.134 0.866 48 H 0.225 0.775 49 H 0.089 0.911 50 H 0.084 0.916 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.327 -32.820 -1.288 35.834 hybrid contribution -0.438 1.343 1.144 1.818 sum -14.765 -31.477 -0.144 34.768 Atomic orbital electron populations 1.21835 0.96118 1.01929 1.01542 1.21549 0.95870 0.94509 1.03099 1.20910 0.93405 0.96981 0.98233 0.92787 1.21949 1.01268 1.00570 0.97146 1.21854 0.97004 0.91526 1.06312 1.21516 0.81309 0.92990 0.74621 1.90670 1.55351 1.48470 1.51986 1.48236 1.06552 1.07213 1.72248 1.22118 0.90181 0.89383 1.00420 1.21921 0.98820 0.96671 0.99146 1.21572 0.96928 0.93428 1.02842 1.21889 0.94376 0.89179 0.97375 0.93655 1.60148 1.40610 1.04220 1.25903 1.21649 1.00409 0.92395 0.92275 1.20917 0.82398 0.88648 0.84428 1.90546 1.62538 1.70943 1.25736 1.42017 1.53530 1.16919 1.10654 1.19013 1.35375 0.93952 0.97650 0.92695 1.26130 0.95455 0.95960 1.03810 1.69807 1.38407 1.14229 1.34897 0.85356 0.80654 0.79116 0.76333 1.17869 1.19951 1.15677 1.21486 0.96143 0.84243 0.99059 0.91798 0.92960 0.93476 0.90687 0.90684 0.92713 0.92132 0.93950 0.86271 0.86388 0.90060 0.86439 0.87763 0.91367 0.91535 0.91642 0.83854 0.91205 0.86551 0.77473 0.91091 0.91570 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.67 71.98 0.70 -0.84 16 2 C -0.11 -0.95 5.40 30.60 0.17 -0.79 16 3 C -0.08 -1.03 2.04 -10.79 -0.02 -1.06 16 4 H 0.05 0.99 7.96 -2.39 -0.02 0.97 16 5 C -0.15 -2.55 8.69 71.98 0.63 -1.92 16 6 C -0.13 -1.35 3.52 29.85 0.11 -1.24 16 7 C 0.51 10.01 7.42 87.66 0.65 10.66 16 8 O -0.58 -17.24 13.38 -3.03 -0.04 -17.28 16 9 N -0.61 -10.56 2.97 -818.83 -2.43 -12.99 16 10 C 0.10 0.90 6.34 86.36 0.55 1.45 16 11 C -0.13 -1.25 6.08 30.67 0.19 -1.06 16 12 C -0.11 -1.90 5.40 30.62 0.17 -1.73 16 13 C 0.08 1.84 2.64 45.00 0.12 1.96 16 14 H 0.05 1.03 7.80 -2.39 -0.02 1.01 16 15 N -0.68 -20.59 5.94 -495.10 -2.94 -23.53 16 16 C 0.07 2.06 5.97 85.56 0.51 2.57 16 17 C 0.45 20.71 7.82 87.66 0.69 21.39 16 18 O -0.61 -34.77 15.78 -3.05 -0.05 -34.81 16 19 N -0.59 -28.30 5.09 -306.99 -1.56 -29.86 16 20 C -0.33 -19.68 10.16 84.04 0.85 -18.82 16 21 H 0.05 3.89 7.39 -2.91 -0.02 3.87 16 22 C -0.01 -0.83 5.50 84.93 0.47 -0.36 16 23 N -0.93 -56.72 13.96 21.66 0.30 -56.42 16 24 Si 0.97 39.06 27.74 68.60 1.90 40.96 16 25 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 27 H -0.23 -8.00 6.52 99.48 0.65 -7.35 16 28 C 0.11 2.61 5.70 86.37 0.49 3.10 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.57 6.56 -2.39 -0.02 0.55 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.05 0.88 6.57 -2.38 -0.02 0.86 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.04 1.00 5.95 -2.39 -0.01 0.98 16 37 H 0.12 0.66 7.94 -2.39 -0.02 0.64 16 38 H 0.12 0.70 7.69 -2.39 -0.02 0.68 16 39 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.12 0.34 5.93 -2.39 -0.01 0.32 16 41 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 42 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.06 1.18 7.43 -2.39 -0.02 1.16 16 45 H 0.34 11.54 8.06 -89.70 -0.72 10.82 16 46 H 0.07 1.91 8.06 -2.39 -0.02 1.89 16 47 H 0.12 3.06 7.42 -2.39 -0.02 3.04 16 48 H 0.39 15.45 5.76 -92.71 -0.53 14.92 16 49 H 0.28 15.50 8.31 -92.70 -0.77 14.72 16 50 H 0.07 1.85 7.01 -2.38 -0.02 1.83 16 51 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -82.52 395.18 1.04 -81.48 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: -0.39 Total: 39.15 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 6.25 Total: 13.29 kcal Atomic # 7 Polarization: -116.17 SS G_CDS: -6.63 Total: -122.80 kcal Atomic # 8 Polarization: -52.00 SS G_CDS: -0.09 Total: -52.09 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 1.90 Total: 40.96 kcal Total: -82.52 1.04 -81.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207913824.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.417 kcal (2) G-P(sol) polarization free energy of solvation -82.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds