Wall clock time and date at job start Sat Apr 11 2020 01:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47265 * 2 1 4 4 H 1.08996 * 109.47539 * 305.00614 * 3 2 1 5 5 C 1.53001 * 109.46618 * 65.00711 * 3 2 1 6 6 C 1.53005 * 109.46898 * 185.00331 * 3 2 1 7 7 C 1.50697 * 109.46937 * 175.00354 * 6 3 2 8 8 O 1.21284 * 120.00267 * 0.02562 * 7 6 3 9 9 N 1.34774 * 120.00224 * 180.02562 * 7 6 3 10 10 C 1.46931 * 120.62995 * 359.97438 * 9 7 6 11 11 C 1.53186 * 108.77629 * 126.41081 * 10 9 7 12 12 C 1.53051 * 109.31180 * 54.63793 * 11 10 9 13 13 C 1.53037 * 109.53521 * 298.63199 * 12 11 10 14 14 H 1.08997 * 109.52646 * 301.39800 * 13 12 11 15 15 N 1.46895 * 109.49533 * 181.31362 * 13 12 11 16 16 C 1.46906 * 110.99789 * 85.16237 * 15 13 12 17 17 C 1.50703 * 109.47109 * 179.97438 * 16 15 13 18 18 O 1.21296 * 119.99996 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99978 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99848 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00405 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99358 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00464 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99431 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47204 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46979 * 120.00140 * 24 22 20 27 27 H 1.48498 * 109.47371 * 240.00040 * 24 22 20 28 28 C 1.46924 * 120.63474 * 179.97438 * 9 7 6 29 29 H 1.09000 * 109.47483 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46699 * 299.99591 * 1 2 3 31 31 H 1.08998 * 109.47284 * 59.99011 * 1 2 3 32 32 H 1.09003 * 109.46699 * 240.00409 * 2 1 3 33 33 H 1.08998 * 109.47284 * 120.00989 * 2 1 3 34 34 H 1.09000 * 109.46635 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.47410 * 299.99355 * 5 3 2 36 36 H 1.08998 * 109.47380 * 60.00241 * 5 3 2 37 37 H 1.08998 * 109.47205 * 55.00599 * 6 3 2 38 38 H 1.09003 * 109.47206 * 295.00179 * 6 3 2 39 39 H 1.09002 * 109.58684 * 246.20643 * 10 9 7 40 40 H 1.09000 * 109.58235 * 6.47940 * 10 9 7 41 41 H 1.09006 * 109.49906 * 174.58468 * 11 10 9 42 42 H 1.09000 * 109.50159 * 294.65440 * 11 10 9 43 43 H 1.08999 * 109.45727 * 178.60902 * 12 11 10 44 44 H 1.08997 * 109.45624 * 58.65052 * 12 11 10 45 45 H 1.00902 * 111.00273 * 209.11760 * 15 13 12 46 46 H 1.08992 * 109.47459 * 299.99826 * 16 15 13 47 47 H 1.09004 * 109.47040 * 59.99976 * 16 15 13 48 48 H 0.97002 * 119.99767 * 359.97438 * 19 17 16 49 49 H 0.96997 * 119.99770 * 179.97438 * 23 22 20 50 50 H 1.09004 * 109.58622 * 113.79701 * 28 9 7 51 51 H 1.09006 * 109.58495 * 353.37751 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6354 2.1264 1.3075 6 6 3.5649 1.4442 -0.1258 7 6 4.0571 2.8632 -0.2492 8 8 3.2662 3.7826 -0.2373 9 7 5.3761 3.1106 -0.3730 10 6 6.3465 2.0074 -0.3885 11 6 7.2185 2.1355 -1.6414 12 6 7.8505 3.5289 -1.6781 13 6 6.7487 4.5889 -1.7461 14 1 6.1374 4.4226 -2.6331 15 7 7.3567 5.9244 -1.8129 16 6 7.6928 6.2811 -3.1978 17 6 8.3123 7.6546 -3.2265 18 8 8.4598 8.2751 -2.1948 19 7 8.7024 8.1935 -4.3986 20 6 9.2664 9.4428 -4.4247 21 1 9.3978 9.9953 -3.5061 22 6 9.6691 9.9981 -5.6331 23 7 9.5098 9.3256 -6.7509 24 14 10.4370 11.7006 -5.6688 25 1 10.5048 12.2421 -4.2876 26 1 11.8076 11.6137 -6.2337 27 1 9.6097 12.5993 -6.5132 28 6 5.8712 4.4886 -0.4948 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5140 0.8899 34 1 1.9991 3.1539 1.3077 35 1 0.5491 2.1252 1.3971 36 1 2.0701 1.5873 2.1492 37 1 3.8570 0.8800 -1.0115 38 1 4.0031 0.9834 0.7595 39 1 6.9744 2.0605 0.5008 40 1 5.8166 1.0550 -0.4053 41 1 8.0042 1.3803 -1.6166 42 1 6.6031 1.9911 -2.5294 43 1 8.4911 3.6141 -2.5558 44 1 8.4459 3.6813 -0.7779 45 1 6.7529 6.6178 -1.3972 46 1 8.3997 5.5549 -3.5987 47 1 6.7866 6.2789 -3.8037 48 1 8.5847 7.6971 -5.2237 49 1 9.7905 9.7135 -7.5944 50 1 6.4604 4.7444 0.3859 51 1 5.0277 5.1733 -0.5842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207913825.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:33:39 Heat of formation + Delta-G solvation = -93.135525 kcal Electronic energy + Delta-G solvation = -27793.040886 eV Core-core repulsion = 23919.296249 eV Total energy + Delta-G solvation = -3873.744637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.58666 -38.60179 -37.85833 -36.49257 -35.13749 -33.84976 -32.39606 -31.39674 -31.17876 -30.00860 -27.98686 -26.34131 -25.57386 -24.33052 -23.64657 -22.69994 -20.76980 -20.17771 -19.33832 -18.93004 -17.88178 -17.37962 -16.45169 -16.08787 -15.80965 -15.33839 -15.25184 -14.87288 -14.56398 -14.53957 -14.30860 -14.06190 -13.84695 -13.76941 -13.52137 -13.34387 -13.00240 -12.75298 -12.54105 -12.26841 -12.22070 -12.05873 -11.87879 -11.67135 -11.53663 -11.43737 -11.23850 -11.09897 -11.01622 -10.92210 -10.87225 -10.84512 -10.73537 -10.33598 -10.21873 -9.82738 -9.51351 -8.84153 -8.45548 -8.09588 -7.95439 -6.41159 -3.81885 2.43899 2.71658 3.17050 3.27561 3.35080 3.91368 4.08164 4.17560 4.28478 4.41020 4.53404 4.60037 4.69744 4.72211 4.83424 4.89450 4.93604 5.07632 5.11064 5.14907 5.23027 5.25638 5.29100 5.33153 5.37148 5.41748 5.46113 5.54045 5.64802 5.66957 5.71742 5.74378 5.75166 5.79872 5.85599 5.92018 5.96577 6.05133 6.09984 6.16636 6.22120 6.29293 6.33133 7.15892 7.23009 7.56182 7.62641 7.99813 8.07218 8.61854 9.18637 9.54950 10.06319 10.76690 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.024952 B = 0.001947 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.894948 B =14377.614519 C =14715.118783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.077 4.077 4 H 0.078 0.922 5 C -0.154 4.154 6 C -0.136 4.136 7 C 0.514 3.486 8 O -0.537 6.537 9 N -0.611 5.611 10 C 0.106 3.894 11 C -0.135 4.135 12 C -0.110 4.110 13 C 0.075 3.925 14 H 0.045 0.955 15 N -0.661 5.661 16 C 0.052 3.948 17 C 0.441 3.559 18 O -0.582 6.582 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.110 3.890 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.046 0.954 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.351 0.649 46 H 0.086 0.914 47 H 0.043 0.957 48 H 0.392 0.608 49 H 0.271 0.729 50 H 0.078 0.922 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.889 -23.404 11.101 28.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.096 4.096 4 H 0.096 0.904 5 C -0.211 4.211 6 C -0.175 4.175 7 C 0.302 3.698 8 O -0.413 6.413 9 N -0.345 5.345 10 C -0.017 4.017 11 C -0.174 4.174 12 C -0.148 4.148 13 C -0.036 4.036 14 H 0.063 0.937 15 N -0.294 5.294 16 C -0.080 4.080 17 C 0.227 3.773 18 O -0.466 6.466 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.013 4.013 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.171 0.829 46 H 0.104 0.896 47 H 0.061 0.939 48 H 0.225 0.775 49 H 0.081 0.919 50 H 0.096 0.904 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.538 -22.640 11.766 28.003 hybrid contribution -0.324 0.620 -1.173 1.366 sum -11.862 -22.020 10.592 27.163 Atomic orbital electron populations 1.21808 0.95694 1.01434 1.02171 1.21590 0.96248 0.96048 1.01832 1.20942 0.92665 0.96019 0.99997 0.90376 1.21991 1.01213 1.02167 0.95750 1.21798 0.97801 0.93998 1.03949 1.20737 0.81475 0.91795 0.75753 1.90678 1.54056 1.46697 1.49916 1.48113 1.06113 1.07484 1.72782 1.21805 0.91462 0.89523 0.98914 1.21945 0.99371 0.98299 0.97780 1.21551 0.97618 0.92194 1.03448 1.21824 0.94158 0.90760 0.96831 0.93720 1.60098 1.49015 1.02400 1.17923 1.21712 0.99652 0.97216 0.89455 1.19793 0.85034 0.87786 0.84720 1.90526 1.60055 1.63312 1.32747 1.41869 1.53987 1.16971 1.07254 1.19764 1.35513 0.92495 0.95037 0.87836 1.25269 0.97943 1.00061 0.94736 1.69621 1.47955 1.38465 0.98305 0.85795 0.78453 0.81515 0.78548 1.19204 1.20751 1.20777 1.21718 0.98407 0.82963 0.98194 0.92898 0.92373 0.92689 0.92053 0.91997 0.90718 0.92695 0.93485 0.88970 0.88975 0.91006 0.89753 0.90330 0.91579 0.91340 0.90830 0.82867 0.89617 0.93856 0.77480 0.91938 0.90383 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.67 37.16 0.36 -0.56 16 2 C -0.12 -0.71 5.40 -26.73 -0.14 -0.86 16 3 C -0.08 -0.61 2.04 -90.62 -0.18 -0.79 16 4 H 0.08 0.76 7.95 -51.93 -0.41 0.34 16 5 C -0.15 -1.34 8.69 37.16 0.32 -1.02 16 6 C -0.14 -0.97 3.52 -27.88 -0.10 -1.07 16 7 C 0.51 5.60 7.42 -10.99 -0.08 5.52 16 8 O -0.54 -7.86 13.38 5.55 0.07 -7.79 16 9 N -0.61 -6.12 2.97 -172.79 -0.51 -6.63 16 10 C 0.11 0.73 6.34 -3.71 -0.02 0.71 16 11 C -0.14 -1.03 6.08 -26.61 -0.16 -1.19 16 12 C -0.11 -1.18 5.40 -26.69 -0.14 -1.32 16 13 C 0.08 0.95 2.64 -67.62 -0.18 0.77 16 14 H 0.04 0.60 7.80 -51.93 -0.41 0.19 16 15 N -0.66 -10.73 5.94 -107.89 -0.64 -11.37 16 16 C 0.05 0.94 5.97 -4.97 -0.03 0.91 16 17 C 0.44 10.54 7.82 -10.98 -0.09 10.46 16 18 O -0.58 -15.98 15.78 5.54 0.09 -15.89 16 19 N -0.56 -14.47 5.29 -10.96 -0.06 -14.52 16 20 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 21 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 24 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 C 0.11 1.32 5.69 -3.73 -0.02 1.29 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.35 6.57 -51.93 -0.34 0.01 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.85 5.95 -51.93 -0.31 0.54 16 35 H 0.05 0.44 6.57 -51.93 -0.34 0.10 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.52 7.69 -51.93 -0.40 0.12 16 38 H 0.09 0.51 7.94 -51.93 -0.41 0.10 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.39 5.93 -51.93 -0.31 0.08 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.79 7.44 -51.93 -0.39 0.40 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.35 5.98 8.06 -39.29 -0.32 5.67 16 46 H 0.09 1.41 7.43 -51.93 -0.39 1.02 16 47 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 48 H 0.39 9.61 7.90 -40.82 -0.32 9.28 16 49 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 50 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 51 H 0.09 1.25 7.01 -51.93 -0.36 0.89 16 LS Contribution 398.30 15.07 6.00 6.00 Total: -1.00 -32.87 398.30 -8.92 -41.79 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -8.86 Total: 11.44 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -0.71 Total: 4.77 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.49 Total: -56.54 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: 0.16 Total: -23.68 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.87 -8.92 -41.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207913825.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.348 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds