Wall clock time and date at job start Sat Apr 11 2020 01:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47265 * 2 1 4 4 H 1.08996 * 109.47539 * 305.00614 * 3 2 1 5 5 C 1.53001 * 109.46618 * 65.00711 * 3 2 1 6 6 C 1.53005 * 109.46898 * 185.00331 * 3 2 1 7 7 C 1.50697 * 109.46937 * 175.00354 * 6 3 2 8 8 O 1.21284 * 120.00267 * 0.02562 * 7 6 3 9 9 N 1.34774 * 120.00224 * 180.02562 * 7 6 3 10 10 C 1.46931 * 120.62995 * 359.97438 * 9 7 6 11 11 C 1.53186 * 108.77629 * 126.41081 * 10 9 7 12 12 C 1.53051 * 109.31180 * 54.63793 * 11 10 9 13 13 C 1.53037 * 109.53521 * 298.63199 * 12 11 10 14 14 H 1.08997 * 109.52646 * 301.39800 * 13 12 11 15 15 N 1.46895 * 109.49533 * 181.31362 * 13 12 11 16 16 C 1.46906 * 110.99789 * 85.16237 * 15 13 12 17 17 C 1.50703 * 109.47109 * 179.97438 * 16 15 13 18 18 O 1.21296 * 119.99996 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99978 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99848 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00405 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99358 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00464 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99431 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47204 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46979 * 120.00140 * 24 22 20 27 27 H 1.48498 * 109.47371 * 240.00040 * 24 22 20 28 28 C 1.46924 * 120.63474 * 179.97438 * 9 7 6 29 29 H 1.09000 * 109.47483 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46699 * 299.99591 * 1 2 3 31 31 H 1.08998 * 109.47284 * 59.99011 * 1 2 3 32 32 H 1.09003 * 109.46699 * 240.00409 * 2 1 3 33 33 H 1.08998 * 109.47284 * 120.00989 * 2 1 3 34 34 H 1.09000 * 109.46635 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.47410 * 299.99355 * 5 3 2 36 36 H 1.08998 * 109.47380 * 60.00241 * 5 3 2 37 37 H 1.08998 * 109.47205 * 55.00599 * 6 3 2 38 38 H 1.09003 * 109.47206 * 295.00179 * 6 3 2 39 39 H 1.09002 * 109.58684 * 246.20643 * 10 9 7 40 40 H 1.09000 * 109.58235 * 6.47940 * 10 9 7 41 41 H 1.09006 * 109.49906 * 174.58468 * 11 10 9 42 42 H 1.09000 * 109.50159 * 294.65440 * 11 10 9 43 43 H 1.08999 * 109.45727 * 178.60902 * 12 11 10 44 44 H 1.08997 * 109.45624 * 58.65052 * 12 11 10 45 45 H 1.00902 * 111.00273 * 209.11760 * 15 13 12 46 46 H 1.08992 * 109.47459 * 299.99826 * 16 15 13 47 47 H 1.09004 * 109.47040 * 59.99976 * 16 15 13 48 48 H 0.97002 * 119.99767 * 359.97438 * 19 17 16 49 49 H 0.96997 * 119.99770 * 179.97438 * 23 22 20 50 50 H 1.09004 * 109.58622 * 113.79701 * 28 9 7 51 51 H 1.09006 * 109.58495 * 353.37751 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6354 2.1264 1.3075 6 6 3.5649 1.4442 -0.1258 7 6 4.0571 2.8632 -0.2492 8 8 3.2662 3.7826 -0.2373 9 7 5.3761 3.1106 -0.3730 10 6 6.3465 2.0074 -0.3885 11 6 7.2185 2.1355 -1.6414 12 6 7.8505 3.5289 -1.6781 13 6 6.7487 4.5889 -1.7461 14 1 6.1374 4.4226 -2.6331 15 7 7.3567 5.9244 -1.8129 16 6 7.6928 6.2811 -3.1978 17 6 8.3123 7.6546 -3.2265 18 8 8.4598 8.2751 -2.1948 19 7 8.7024 8.1935 -4.3986 20 6 9.2664 9.4428 -4.4247 21 1 9.3978 9.9953 -3.5061 22 6 9.6691 9.9981 -5.6331 23 7 9.5098 9.3256 -6.7509 24 14 10.4370 11.7006 -5.6688 25 1 10.5048 12.2421 -4.2876 26 1 11.8076 11.6137 -6.2337 27 1 9.6097 12.5993 -6.5132 28 6 5.8712 4.4886 -0.4948 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5140 0.8899 34 1 1.9991 3.1539 1.3077 35 1 0.5491 2.1252 1.3971 36 1 2.0701 1.5873 2.1492 37 1 3.8570 0.8800 -1.0115 38 1 4.0031 0.9834 0.7595 39 1 6.9744 2.0605 0.5008 40 1 5.8166 1.0550 -0.4053 41 1 8.0042 1.3803 -1.6166 42 1 6.6031 1.9911 -2.5294 43 1 8.4911 3.6141 -2.5558 44 1 8.4459 3.6813 -0.7779 45 1 6.7529 6.6178 -1.3972 46 1 8.3997 5.5549 -3.5987 47 1 6.7866 6.2789 -3.8037 48 1 8.5847 7.6971 -5.2237 49 1 9.7905 9.7135 -7.5944 50 1 6.4604 4.7444 0.3859 51 1 5.0277 5.1733 -0.5842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207913825.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:33:38 Heat of formation + Delta-G solvation = -115.901661 kcal Electronic energy + Delta-G solvation = -27794.028100 eV Core-core repulsion = 23919.296249 eV Total energy + Delta-G solvation = -3874.731851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.41573 -40.23162 -39.02447 -37.17453 -36.39561 -35.78358 -33.35448 -33.19526 -32.04395 -30.94696 -28.76126 -27.84940 -26.45695 -25.77673 -24.49679 -23.53077 -21.59853 -21.18066 -20.83459 -19.97820 -19.70618 -18.24004 -17.83844 -17.16599 -16.80248 -16.61262 -16.48036 -16.09054 -15.85181 -15.53405 -15.34578 -15.16973 -15.08216 -14.86164 -14.46799 -14.20175 -14.04679 -13.75609 -13.58355 -13.43516 -13.33884 -13.28975 -12.91355 -12.78680 -12.71112 -12.42999 -12.38378 -12.19244 -12.12667 -11.94832 -11.83394 -11.64495 -11.60008 -11.53686 -11.49900 -11.37586 -10.66666 -10.38594 -10.04381 -9.69558 -9.42116 -8.49041 -5.98071 1.35287 1.40719 1.55175 1.63720 1.92123 2.01303 2.28146 2.89984 3.17751 3.40681 3.53613 3.77961 3.83384 3.92146 4.00546 4.05615 4.10515 4.24633 4.25469 4.27966 4.41304 4.46618 4.50667 4.52096 4.61746 4.67707 4.69320 4.72798 4.78391 4.81674 4.84977 4.93345 4.99495 5.08487 5.15912 5.18970 5.21631 5.25627 5.33322 5.36936 5.39786 5.47068 5.54734 5.60609 5.85430 6.05333 6.27832 6.43859 6.56929 7.09827 7.19795 7.52492 8.07665 8.68614 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.024952 B = 0.001947 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.894948 B =14377.614519 C =14715.118783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C -0.077 4.077 4 H 0.052 0.948 5 C -0.152 4.152 6 C -0.128 4.128 7 C 0.505 3.495 8 O -0.585 6.585 9 N -0.609 5.609 10 C 0.101 3.899 11 C -0.127 4.127 12 C -0.109 4.109 13 C 0.081 3.919 14 H 0.040 0.960 15 N -0.672 5.672 16 C 0.069 3.931 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.572 5.572 20 C -0.335 4.335 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.995 3.005 25 H -0.274 1.274 26 H -0.269 1.269 27 H -0.271 1.271 28 C 0.116 3.884 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.083 0.917 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.342 0.658 46 H 0.106 0.894 47 H 0.060 0.940 48 H 0.396 0.604 49 H 0.278 0.722 50 H 0.076 0.924 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.389 -26.280 10.966 30.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.096 4.096 4 H 0.070 0.930 5 C -0.209 4.209 6 C -0.167 4.167 7 C 0.296 3.704 8 O -0.465 6.465 9 N -0.343 5.343 10 C -0.020 4.020 11 C -0.166 4.166 12 C -0.147 4.147 13 C -0.029 4.029 14 H 0.058 0.942 15 N -0.304 5.304 16 C -0.064 4.064 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.209 5.209 20 C -0.464 4.464 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.818 3.182 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.196 1.196 28 C -0.008 4.008 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.101 0.899 40 H 0.136 0.864 41 H 0.123 0.877 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.161 0.839 46 H 0.124 0.876 47 H 0.078 0.922 48 H 0.230 0.770 49 H 0.088 0.912 50 H 0.094 0.906 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.025 -25.577 11.610 30.174 hybrid contribution -0.508 1.508 -1.101 1.935 sum -11.533 -24.068 10.509 28.683 Atomic orbital electron populations 1.21833 0.96098 1.01935 1.01539 1.21548 0.95886 0.94493 1.03095 1.20914 0.93366 0.97008 0.98300 0.92960 1.21943 1.01274 1.00597 0.97055 1.21857 0.97049 0.91472 1.06312 1.21526 0.81225 0.93011 0.74684 1.90668 1.55320 1.48468 1.52030 1.48237 1.06635 1.07250 1.72129 1.22111 0.91196 0.89645 0.99053 1.21923 1.00007 0.96543 0.98112 1.21560 0.96804 0.93506 1.02832 1.21877 0.94882 0.89311 0.96857 0.94163 1.60161 1.49702 1.03834 1.16748 1.21548 1.00235 0.93654 0.90963 1.20807 0.83677 0.89478 0.83523 1.90493 1.61362 1.64994 1.34012 1.41929 1.54394 1.16592 1.08013 1.19720 1.37931 0.93983 0.94806 0.90300 1.26067 0.97680 1.03561 0.93986 1.69677 1.47833 1.39819 0.98743 0.84849 0.78113 0.76973 0.78252 1.19834 1.19427 1.19591 1.21464 0.97245 0.84313 0.97781 0.91779 0.92848 0.93593 0.90818 0.90563 0.93902 0.92680 0.92008 0.86395 0.86254 0.89909 0.86372 0.87701 0.91566 0.92095 0.91324 0.83872 0.87580 0.92246 0.76975 0.91241 0.90553 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.67 71.98 0.70 -0.95 16 2 C -0.11 -1.04 5.40 30.59 0.17 -0.87 16 3 C -0.08 -1.11 2.04 -10.79 -0.02 -1.13 16 4 H 0.05 1.02 7.95 -2.39 -0.02 1.00 16 5 C -0.15 -2.58 8.69 71.98 0.63 -1.96 16 6 C -0.13 -1.47 3.52 29.85 0.11 -1.37 16 7 C 0.50 10.58 7.42 87.66 0.65 11.23 16 8 O -0.58 -17.86 13.38 -3.04 -0.04 -17.90 16 9 N -0.61 -11.35 2.97 -818.96 -2.43 -13.79 16 10 C 0.10 1.04 6.34 86.36 0.55 1.59 16 11 C -0.13 -1.50 6.08 30.67 0.19 -1.31 16 12 C -0.11 -2.14 5.40 30.62 0.17 -1.98 16 13 C 0.08 2.02 2.64 44.98 0.12 2.13 16 14 H 0.04 1.05 7.80 -2.39 -0.02 1.03 16 15 N -0.67 -22.11 5.94 -495.24 -2.94 -25.05 16 16 C 0.07 2.45 5.97 85.56 0.51 2.96 16 17 C 0.44 21.43 7.82 87.66 0.69 22.12 16 18 O -0.62 -35.39 15.78 -3.08 -0.05 -35.44 16 19 N -0.57 -30.03 5.29 -306.98 -1.62 -31.65 16 20 C -0.33 -19.38 9.68 84.04 0.81 -18.57 16 21 H 0.08 4.88 7.16 -2.91 -0.02 4.85 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 23 N -0.92 -50.13 13.05 21.66 0.28 -49.85 16 24 Si 0.99 43.48 29.55 68.60 2.03 45.51 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 C 0.12 2.81 5.69 86.35 0.49 3.30 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.60 6.57 -2.39 -0.02 0.58 16 31 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.04 1.02 5.95 -2.39 -0.01 1.00 16 35 H 0.05 0.89 6.57 -2.39 -0.02 0.88 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.12 0.80 7.69 -2.39 -0.02 0.78 16 38 H 0.12 0.78 7.94 -2.39 -0.02 0.76 16 39 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.12 0.47 5.93 -2.39 -0.01 0.46 16 41 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.06 1.30 7.44 -2.39 -0.02 1.28 16 44 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.34 12.19 8.06 -89.69 -0.72 11.47 16 46 H 0.11 3.38 7.43 -2.39 -0.02 3.37 16 47 H 0.06 1.95 8.06 -2.38 -0.02 1.93 16 48 H 0.40 19.71 7.90 -92.71 -0.73 18.98 16 49 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 50 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 51 H 0.07 1.94 7.01 -2.38 -0.02 1.92 16 Total: -1.00 -74.61 398.30 0.90 -73.71 By element: Atomic # 1 Polarization: 40.04 SS G_CDS: -0.53 Total: 39.51 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 6.21 Total: 14.95 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -6.71 Total: -120.34 kcal Atomic # 8 Polarization: -53.25 SS G_CDS: -0.09 Total: -53.34 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -74.61 0.90 -73.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207913825.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.192 kcal (2) G-P(sol) polarization free energy of solvation -74.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds