Wall clock time and date at job start Sat Apr 11 2020 01:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47406 * 2 1 4 4 H 1.09006 * 109.46829 * 54.99630 * 3 2 1 5 5 C 1.53004 * 109.47353 * 294.99957 * 3 2 1 6 6 C 1.53001 * 109.47301 * 174.99713 * 3 2 1 7 7 C 1.50700 * 109.46939 * 184.99803 * 6 3 2 8 8 O 1.21281 * 120.00155 * 0.02562 * 7 6 3 9 9 N 1.34780 * 119.99912 * 179.97438 * 7 6 3 10 10 C 1.46931 * 120.62702 * 0.02562 * 9 7 6 11 11 C 1.53187 * 108.77274 * 233.58083 * 10 9 7 12 12 C 1.53049 * 109.31497 * 305.36469 * 11 10 9 13 13 C 1.53039 * 109.53353 * 61.36666 * 12 11 10 14 14 H 1.09002 * 109.49751 * 58.58726 * 13 12 11 15 15 N 1.46907 * 109.49602 * 178.65201 * 13 12 11 16 16 C 1.46897 * 110.99762 * 274.93799 * 15 13 12 17 17 C 1.50700 * 109.47026 * 180.02562 * 16 15 13 18 18 O 1.21288 * 120.00043 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99971 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99957 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99903 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00075 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99836 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99992 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47266 * 90.00268 * 24 22 20 26 26 H 1.48503 * 109.47271 * 210.00324 * 24 22 20 27 27 H 1.48500 * 109.47168 * 330.00146 * 24 22 20 28 28 C 1.46925 * 120.63279 * 179.97438 * 9 7 6 29 29 H 1.08993 * 109.47107 * 300.00105 * 1 2 3 30 30 H 1.09003 * 109.47119 * 60.00246 * 1 2 3 31 31 H 1.09003 * 109.47235 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47356 * 239.99444 * 2 1 3 33 33 H 1.09000 * 109.46846 * 120.00191 * 2 1 3 34 34 H 1.08996 * 109.47593 * 179.97438 * 5 3 2 35 35 H 1.08998 * 109.46694 * 299.99916 * 5 3 2 36 36 H 1.08998 * 109.46958 * 59.99421 * 5 3 2 37 37 H 1.08997 * 109.46722 * 65.00346 * 6 3 2 38 38 H 1.08998 * 109.47119 * 305.00076 * 6 3 2 39 39 H 1.09002 * 109.58421 * 113.79367 * 10 9 7 40 40 H 1.08993 * 109.70684 * 353.44142 * 10 9 7 41 41 H 1.09006 * 109.49516 * 185.41853 * 11 10 9 42 42 H 1.08993 * 109.52540 * 65.33473 * 11 10 9 43 43 H 1.08998 * 109.45961 * 301.34644 * 12 11 10 44 44 H 1.08995 * 109.44701 * 181.37889 * 12 11 10 45 45 H 1.00894 * 110.99534 * 150.98116 * 15 13 12 46 46 H 1.09002 * 109.47250 * 299.99661 * 16 15 13 47 47 H 1.08998 * 109.47388 * 59.99939 * 16 15 13 48 48 H 0.96996 * 120.00304 * 359.97438 * 19 17 16 49 49 H 0.97005 * 119.99670 * 179.97438 * 23 22 20 50 50 H 1.09005 * 109.58300 * 6.62965 * 28 9 7 51 51 H 1.08998 * 109.58651 * 246.20905 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4442 0.1258 7 6 4.0570 2.8632 0.2493 8 8 3.2660 3.7825 0.2382 9 7 5.3761 3.1106 0.3730 10 6 6.3464 2.0074 0.3885 11 6 7.2186 2.1355 1.6413 12 6 7.8505 3.5290 1.6778 13 6 6.7487 4.5889 1.7459 14 1 6.1376 4.4221 2.6329 15 7 7.3567 5.9245 1.8134 16 6 7.6945 6.2797 3.1982 17 6 8.3139 7.6532 3.2277 18 8 8.4601 8.2748 2.1966 19 7 8.7054 8.1908 4.4000 20 6 9.2685 9.4406 4.4268 21 1 9.3986 9.9941 3.5086 22 6 9.6726 9.9947 5.6353 23 7 10.2118 11.1928 5.6611 24 14 9.4481 9.0370 7.2233 25 1 10.6575 8.2146 7.4806 26 1 9.2455 9.9848 8.3485 27 1 8.2629 8.1504 7.1034 28 6 5.8712 4.4887 0.4937 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.9983 3.1543 -1.3072 35 1 2.0700 1.5875 -2.1491 36 1 0.5491 2.1252 -1.3970 37 1 4.0029 0.9835 -0.7596 38 1 3.8570 0.8799 1.0114 39 1 6.9743 2.0605 -0.5009 40 1 5.8186 1.0540 0.4066 41 1 8.0042 1.3803 1.6164 42 1 6.6036 1.9916 2.5296 43 1 8.4459 3.6814 0.7777 44 1 8.4910 3.6141 2.5556 45 1 6.7524 6.6182 1.3992 46 1 6.7891 6.2768 3.8052 47 1 8.4020 5.5530 3.5975 48 1 8.5882 7.6939 5.2247 49 1 10.4936 11.5797 6.5048 50 1 5.0278 5.1735 0.5825 51 1 6.4604 4.7437 -0.3871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207913826.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:33:44 Heat of formation + Delta-G solvation = -85.804360 kcal Electronic energy + Delta-G solvation = -27860.951867 eV Core-core repulsion = 23987.525133 eV Total energy + Delta-G solvation = -3873.426734 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.63180 -38.72971 -37.98763 -36.53110 -35.22350 -33.90957 -32.45889 -31.68215 -31.37343 -30.10772 -28.03595 -26.50232 -25.62618 -24.28506 -23.57227 -22.73850 -20.81216 -20.22516 -19.42807 -19.04472 -18.33518 -17.41885 -16.46669 -16.13285 -15.84289 -15.44326 -15.31102 -14.99287 -14.73913 -14.59572 -14.39420 -14.09003 -13.90105 -13.73148 -13.57719 -13.19968 -12.99377 -12.79405 -12.66311 -12.46019 -12.26873 -12.17744 -12.06047 -11.94695 -11.70364 -11.52900 -11.29301 -11.20310 -11.05675 -10.97757 -10.91605 -10.89356 -10.80426 -10.59344 -9.97435 -9.86733 -9.57110 -8.89081 -8.59022 -8.21618 -8.16290 -6.30751 -3.82150 2.39817 2.66851 3.02599 3.06763 3.14977 3.74047 4.04023 4.10607 4.14281 4.37191 4.49894 4.51518 4.64237 4.67094 4.76849 4.80108 4.89975 4.92827 5.05084 5.08110 5.16597 5.21255 5.24018 5.30304 5.34205 5.35986 5.42738 5.48499 5.58040 5.61900 5.62409 5.70432 5.71567 5.72494 5.78265 5.80705 5.88193 5.90925 5.97458 6.06989 6.15716 6.20395 6.25293 7.05643 7.15868 7.52878 7.58529 7.95646 8.14819 8.60020 8.95284 9.42693 9.82841 10.82364 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.021951 B = 0.002055 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.272350 B =13619.413932 C =13793.682368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.077 4.077 4 H 0.078 0.922 5 C -0.154 4.154 6 C -0.136 4.136 7 C 0.514 3.486 8 O -0.536 6.536 9 N -0.611 5.611 10 C 0.106 3.894 11 C -0.135 4.135 12 C -0.110 4.110 13 C 0.075 3.925 14 H 0.045 0.955 15 N -0.661 5.661 16 C 0.050 3.950 17 C 0.450 3.550 18 O -0.564 6.564 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.110 3.890 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.353 0.647 46 H 0.045 0.955 47 H 0.087 0.913 48 H 0.370 0.630 49 H 0.273 0.727 50 H 0.092 0.908 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.646 -27.979 -8.829 32.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.096 4.096 4 H 0.096 0.904 5 C -0.211 4.211 6 C -0.175 4.175 7 C 0.302 3.698 8 O -0.413 6.413 9 N -0.345 5.345 10 C -0.017 4.017 11 C -0.174 4.174 12 C -0.148 4.148 13 C -0.036 4.036 14 H 0.063 0.937 15 N -0.294 5.294 16 C -0.083 4.083 17 C 0.236 3.764 18 O -0.445 6.445 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.013 4.013 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.173 0.827 46 H 0.063 0.937 47 H 0.105 0.895 48 H 0.203 0.797 49 H 0.084 0.916 50 H 0.110 0.890 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.249 -27.082 -9.570 31.632 hybrid contribution -0.739 -0.486 1.906 2.101 sum -13.988 -27.568 -7.664 31.850 Atomic orbital electron populations 1.21808 0.95680 1.01449 1.02177 1.21588 0.96262 0.96037 1.01834 1.20942 0.92644 0.96030 1.00005 0.90392 1.21992 1.01241 1.02158 0.95746 1.21798 0.97825 0.93974 1.03952 1.20743 0.81465 0.91805 0.75737 1.90680 1.54040 1.46702 1.49868 1.48111 1.06119 1.07452 1.72842 1.21799 0.91465 0.89554 0.98903 1.21945 0.99384 0.98267 0.97803 1.21557 0.97594 0.92220 1.03473 1.21848 0.94192 0.90622 0.96920 0.93708 1.60083 1.49137 1.02544 1.17662 1.21745 0.99701 0.97008 0.89864 1.19685 0.84595 0.87725 0.84412 1.90567 1.58637 1.62910 1.32414 1.42203 1.56390 1.17530 1.06890 1.19436 1.35580 0.91125 0.97217 0.86260 1.25039 0.97209 0.96021 0.97912 1.69625 1.40518 1.14803 1.27161 0.86669 0.78709 0.80143 0.83843 1.19599 1.20178 1.19559 1.21725 0.98412 0.82998 0.98145 0.92691 0.92361 0.92888 0.91983 0.92067 0.90715 0.93462 0.92682 0.88954 0.88986 0.90960 0.89722 0.90306 0.91617 0.90731 0.91400 0.82683 0.93739 0.89489 0.79715 0.91620 0.88983 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.67 37.16 0.36 -0.53 16 2 C -0.12 -0.68 5.40 -26.73 -0.14 -0.82 16 3 C -0.08 -0.58 2.04 -90.62 -0.18 -0.77 16 4 H 0.08 0.73 7.96 -51.93 -0.41 0.32 16 5 C -0.15 -1.30 8.69 37.16 0.32 -0.98 16 6 C -0.14 -0.93 3.52 -27.88 -0.10 -1.02 16 7 C 0.51 5.38 7.41 -10.98 -0.08 5.30 16 8 O -0.54 -7.64 13.38 5.56 0.07 -7.56 16 9 N -0.61 -5.82 2.97 -172.75 -0.51 -6.34 16 10 C 0.11 0.68 6.34 -3.71 -0.02 0.66 16 11 C -0.14 -0.94 6.08 -26.61 -0.16 -1.10 16 12 C -0.11 -1.10 5.40 -26.69 -0.14 -1.24 16 13 C 0.08 0.89 2.64 -67.57 -0.18 0.71 16 14 H 0.04 0.56 7.80 -51.93 -0.41 0.15 16 15 N -0.66 -10.17 5.94 -107.84 -0.64 -10.81 16 16 C 0.05 0.83 5.97 -4.98 -0.03 0.80 16 17 C 0.45 10.29 7.82 -10.99 -0.09 10.21 16 18 O -0.56 -15.23 15.78 5.55 0.09 -15.14 16 19 N -0.59 -14.19 5.09 -10.96 -0.06 -14.24 16 20 C -0.30 -8.70 10.16 -14.93 -0.15 -8.85 16 21 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.89 13.96 55.50 0.77 -25.11 16 24 Si 0.88 19.48 27.74 -169.99 -4.71 14.77 16 25 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 28 C 0.11 1.25 5.70 -3.69 -0.02 1.23 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.34 6.57 -51.93 -0.34 0.00 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.83 5.95 -51.93 -0.31 0.52 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 0.43 6.56 -51.93 -0.34 0.09 16 37 H 0.09 0.48 7.94 -51.93 -0.41 0.07 16 38 H 0.09 0.48 7.69 -51.93 -0.40 0.08 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.35 5.95 -51.93 -0.31 0.05 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.72 7.43 -51.93 -0.39 0.33 16 45 H 0.35 5.74 8.06 -39.29 -0.32 5.42 16 46 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 47 H 0.09 1.29 7.42 -51.93 -0.39 0.90 16 48 H 0.37 7.81 5.76 -40.82 -0.24 7.57 16 49 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 50 H 0.09 1.21 7.01 -51.93 -0.36 0.84 16 51 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 395.19 15.07 5.96 5.96 Total: -1.00 -34.05 395.19 -8.57 -42.62 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -8.82 Total: 11.23 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -0.72 Total: 4.63 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -0.43 Total: -56.50 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: 0.16 Total: -22.70 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.77 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.05 -8.57 -42.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207913826.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.181 kcal (2) G-P(sol) polarization free energy of solvation -34.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds