Wall clock time and date at job start Sat Apr 11 2020 01:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47406 * 2 1 4 4 H 1.09006 * 109.46829 * 54.99630 * 3 2 1 5 5 C 1.53004 * 109.47353 * 294.99957 * 3 2 1 6 6 C 1.53001 * 109.47301 * 174.99713 * 3 2 1 7 7 C 1.50700 * 109.46939 * 184.99803 * 6 3 2 8 8 O 1.21281 * 120.00155 * 0.02562 * 7 6 3 9 9 N 1.34780 * 119.99912 * 179.97438 * 7 6 3 10 10 C 1.46931 * 120.62702 * 0.02562 * 9 7 6 11 11 C 1.53187 * 108.77274 * 233.58083 * 10 9 7 12 12 C 1.53049 * 109.31497 * 305.36469 * 11 10 9 13 13 C 1.53039 * 109.53353 * 61.36666 * 12 11 10 14 14 H 1.09002 * 109.49751 * 58.58726 * 13 12 11 15 15 N 1.46907 * 109.49602 * 178.65201 * 13 12 11 16 16 C 1.46897 * 110.99762 * 274.93799 * 15 13 12 17 17 C 1.50700 * 109.47026 * 180.02562 * 16 15 13 18 18 O 1.21288 * 120.00043 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99971 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99957 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99903 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00075 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99836 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99992 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47266 * 90.00268 * 24 22 20 26 26 H 1.48503 * 109.47271 * 210.00324 * 24 22 20 27 27 H 1.48500 * 109.47168 * 330.00146 * 24 22 20 28 28 C 1.46925 * 120.63279 * 179.97438 * 9 7 6 29 29 H 1.08993 * 109.47107 * 300.00105 * 1 2 3 30 30 H 1.09003 * 109.47119 * 60.00246 * 1 2 3 31 31 H 1.09003 * 109.47235 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47356 * 239.99444 * 2 1 3 33 33 H 1.09000 * 109.46846 * 120.00191 * 2 1 3 34 34 H 1.08996 * 109.47593 * 179.97438 * 5 3 2 35 35 H 1.08998 * 109.46694 * 299.99916 * 5 3 2 36 36 H 1.08998 * 109.46958 * 59.99421 * 5 3 2 37 37 H 1.08997 * 109.46722 * 65.00346 * 6 3 2 38 38 H 1.08998 * 109.47119 * 305.00076 * 6 3 2 39 39 H 1.09002 * 109.58421 * 113.79367 * 10 9 7 40 40 H 1.08993 * 109.70684 * 353.44142 * 10 9 7 41 41 H 1.09006 * 109.49516 * 185.41853 * 11 10 9 42 42 H 1.08993 * 109.52540 * 65.33473 * 11 10 9 43 43 H 1.08998 * 109.45961 * 301.34644 * 12 11 10 44 44 H 1.08995 * 109.44701 * 181.37889 * 12 11 10 45 45 H 1.00894 * 110.99534 * 150.98116 * 15 13 12 46 46 H 1.09002 * 109.47250 * 299.99661 * 16 15 13 47 47 H 1.08998 * 109.47388 * 59.99939 * 16 15 13 48 48 H 0.96996 * 120.00304 * 359.97438 * 19 17 16 49 49 H 0.97005 * 119.99670 * 179.97438 * 23 22 20 50 50 H 1.09005 * 109.58300 * 6.62965 * 28 9 7 51 51 H 1.08998 * 109.58651 * 246.20905 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4442 0.1258 7 6 4.0570 2.8632 0.2493 8 8 3.2660 3.7825 0.2382 9 7 5.3761 3.1106 0.3730 10 6 6.3464 2.0074 0.3885 11 6 7.2186 2.1355 1.6413 12 6 7.8505 3.5290 1.6778 13 6 6.7487 4.5889 1.7459 14 1 6.1376 4.4221 2.6329 15 7 7.3567 5.9245 1.8134 16 6 7.6945 6.2797 3.1982 17 6 8.3139 7.6532 3.2277 18 8 8.4601 8.2748 2.1966 19 7 8.7054 8.1908 4.4000 20 6 9.2685 9.4406 4.4268 21 1 9.3986 9.9941 3.5086 22 6 9.6726 9.9947 5.6353 23 7 10.2118 11.1928 5.6611 24 14 9.4481 9.0370 7.2233 25 1 10.6575 8.2146 7.4806 26 1 9.2455 9.9848 8.3485 27 1 8.2629 8.1504 7.1034 28 6 5.8712 4.4887 0.4937 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.9983 3.1543 -1.3072 35 1 2.0700 1.5875 -2.1491 36 1 0.5491 2.1252 -1.3970 37 1 4.0029 0.9835 -0.7596 38 1 3.8570 0.8799 1.0114 39 1 6.9743 2.0605 -0.5009 40 1 5.8186 1.0540 0.4066 41 1 8.0042 1.3803 1.6164 42 1 6.6036 1.9916 2.5296 43 1 8.4459 3.6814 0.7777 44 1 8.4910 3.6141 2.5556 45 1 6.7524 6.6182 1.3992 46 1 6.7891 6.2768 3.8052 47 1 8.4020 5.5530 3.5975 48 1 8.5882 7.6939 5.2247 49 1 10.4936 11.5797 6.5048 50 1 5.0278 5.1735 0.5825 51 1 6.4604 4.7437 -0.3871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207913826.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:33:43 Heat of formation + Delta-G solvation = -110.923882 kcal Electronic energy + Delta-G solvation = -27862.041131 eV Core-core repulsion = 23987.525133 eV Total energy + Delta-G solvation = -3874.515998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.41307 -40.36301 -39.03956 -37.17695 -36.41305 -35.82359 -33.78113 -33.23562 -32.05898 -30.97855 -28.79395 -27.93403 -26.43456 -25.62088 -24.47298 -23.51453 -21.58337 -21.34307 -20.86492 -20.33436 -19.71451 -18.22595 -17.81268 -17.22593 -16.85290 -16.63362 -16.59973 -16.05508 -15.75092 -15.52460 -15.21762 -15.15401 -15.02576 -14.90238 -14.57422 -14.21416 -14.19261 -14.04993 -13.76585 -13.47544 -13.34541 -13.32343 -12.94933 -12.78785 -12.71333 -12.43815 -12.37636 -12.19145 -12.00759 -11.93645 -11.81991 -11.63816 -11.59702 -11.53377 -11.49822 -11.37699 -10.66514 -10.47363 -10.27229 -9.69075 -9.41832 -8.43094 -6.04366 1.28796 1.34158 1.43171 1.64013 1.90669 1.93286 2.21452 2.71514 3.12531 3.31574 3.52404 3.77916 3.83379 3.91797 4.00410 4.04844 4.09911 4.15518 4.25282 4.26821 4.36818 4.46378 4.48653 4.51485 4.61879 4.67853 4.69670 4.72761 4.79070 4.82313 4.84959 4.93283 5.00884 5.09249 5.15927 5.19336 5.22114 5.25495 5.33172 5.37430 5.47987 5.51511 5.54892 5.60458 5.87491 5.99930 6.26242 6.44034 6.57074 6.85326 7.20119 7.36576 7.92816 8.74496 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.021951 B = 0.002055 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.272350 B =13619.413932 C =13793.682368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C -0.077 4.077 4 H 0.053 0.947 5 C -0.152 4.152 6 C -0.128 4.128 7 C 0.505 3.495 8 O -0.584 6.584 9 N -0.609 5.609 10 C 0.100 3.900 11 C -0.127 4.127 12 C -0.109 4.109 13 C 0.082 3.918 14 H 0.046 0.954 15 N -0.676 5.676 16 C 0.065 3.935 17 C 0.448 3.552 18 O -0.613 6.613 19 N -0.590 5.590 20 C -0.331 4.331 21 H 0.055 0.945 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.966 3.034 25 H -0.254 1.254 26 H -0.275 1.275 27 H -0.233 1.233 28 C 0.115 3.885 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.081 0.919 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.343 0.657 46 H 0.070 0.930 47 H 0.117 0.883 48 H 0.390 0.610 49 H 0.280 0.720 50 H 0.066 0.934 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.982 -33.119 -7.138 36.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.096 4.096 4 H 0.071 0.929 5 C -0.209 4.209 6 C -0.167 4.167 7 C 0.296 3.704 8 O -0.465 6.465 9 N -0.342 5.342 10 C -0.021 4.021 11 C -0.166 4.166 12 C -0.148 4.148 13 C -0.028 4.028 14 H 0.064 0.936 15 N -0.309 5.309 16 C -0.067 4.067 17 C 0.236 3.764 18 O -0.498 6.498 19 N -0.231 5.231 20 C -0.460 4.460 21 H 0.073 0.927 22 C -0.214 4.214 23 N -0.573 5.573 24 Si 0.786 3.214 25 H -0.179 1.179 26 H -0.200 1.200 27 H -0.157 1.157 28 C -0.009 4.009 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.099 0.901 40 H 0.136 0.864 41 H 0.122 0.878 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.161 0.839 46 H 0.088 0.912 47 H 0.135 0.865 48 H 0.225 0.775 49 H 0.089 0.911 50 H 0.084 0.916 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.574 -32.283 -7.887 35.898 hybrid contribution -0.631 1.204 1.222 1.828 sum -14.206 -31.079 -6.665 34.816 Atomic orbital electron populations 1.21835 0.96123 1.01929 1.01540 1.21546 0.95866 0.94518 1.03097 1.20911 0.93402 0.96979 0.98268 0.92886 1.21947 1.01271 1.00596 0.97100 1.21853 0.97010 0.91521 1.06306 1.21516 0.81252 0.92978 0.74687 1.90670 1.55326 1.48468 1.52013 1.48231 1.06599 1.07254 1.72152 1.22108 0.91212 0.89648 0.99141 1.21921 0.99975 0.96607 0.98053 1.21572 0.96817 0.93421 1.02960 1.21891 0.94883 0.89155 0.96906 0.93641 1.60148 1.49859 1.03936 1.16943 1.21649 1.00815 0.93007 0.91257 1.20918 0.82774 0.89529 0.83174 1.90546 1.60104 1.64872 1.34241 1.42017 1.56589 1.16235 1.08280 1.19012 1.38132 0.93155 0.95676 0.92696 1.26133 0.95730 0.97060 1.02457 1.69807 1.41443 1.17187 1.28906 0.85354 0.80570 0.78879 0.76642 1.17870 1.19955 1.15674 1.21484 0.97282 0.84267 0.97884 0.93539 0.92902 0.91799 0.90629 0.90751 0.93896 0.92064 0.92710 0.86363 0.86306 0.90105 0.86423 0.87761 0.91346 0.91544 0.91636 0.83854 0.91196 0.86546 0.77471 0.91092 0.91566 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.67 71.98 0.70 -0.85 16 2 C -0.11 -0.96 5.40 30.59 0.17 -0.79 16 3 C -0.08 -1.04 2.04 -10.79 -0.02 -1.06 16 4 H 0.05 0.99 7.96 -2.38 -0.02 0.97 16 5 C -0.15 -2.50 8.69 71.98 0.63 -1.88 16 6 C -0.13 -1.35 3.52 29.85 0.11 -1.24 16 7 C 0.51 10.01 7.41 87.66 0.65 10.66 16 8 O -0.58 -17.24 13.38 -3.03 -0.04 -17.28 16 9 N -0.61 -10.56 2.97 -818.83 -2.43 -12.99 16 10 C 0.10 0.90 6.34 86.36 0.55 1.45 16 11 C -0.13 -1.25 6.08 30.67 0.19 -1.06 16 12 C -0.11 -1.90 5.40 30.62 0.17 -1.73 16 13 C 0.08 1.84 2.64 45.00 0.12 1.95 16 14 H 0.05 1.03 7.80 -2.39 -0.02 1.02 16 15 N -0.68 -20.60 5.94 -495.10 -2.94 -23.54 16 16 C 0.07 2.06 5.97 85.56 0.51 2.57 16 17 C 0.45 20.71 7.82 87.66 0.69 21.39 16 18 O -0.61 -34.77 15.78 -3.05 -0.05 -34.81 16 19 N -0.59 -28.30 5.09 -306.99 -1.56 -29.86 16 20 C -0.33 -19.67 10.16 84.04 0.85 -18.81 16 21 H 0.05 3.89 7.39 -2.91 -0.02 3.87 16 22 C -0.02 -0.84 5.50 84.93 0.47 -0.38 16 23 N -0.93 -56.73 13.96 21.66 0.30 -56.43 16 24 Si 0.97 39.07 27.74 68.60 1.90 40.97 16 25 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 27 H -0.23 -7.99 6.52 99.48 0.65 -7.35 16 28 C 0.11 2.61 5.70 86.37 0.49 3.10 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.57 6.57 -2.39 -0.02 0.55 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.08 0.47 8.14 -2.39 -0.02 0.46 16 33 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.04 0.99 5.95 -2.39 -0.01 0.98 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.05 0.86 6.56 -2.39 -0.02 0.85 16 37 H 0.12 0.69 7.94 -2.39 -0.02 0.67 16 38 H 0.12 0.67 7.69 -2.39 -0.02 0.65 16 39 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.12 0.33 5.95 -2.39 -0.01 0.32 16 41 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 42 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.06 1.18 7.43 -2.39 -0.02 1.16 16 45 H 0.34 11.55 8.06 -89.70 -0.72 10.82 16 46 H 0.07 1.91 8.06 -2.39 -0.02 1.89 16 47 H 0.12 3.06 7.42 -2.39 -0.02 3.04 16 48 H 0.39 15.45 5.76 -92.71 -0.53 14.92 16 49 H 0.28 15.50 8.31 -92.70 -0.77 14.73 16 50 H 0.07 1.85 7.01 -2.38 -0.02 1.83 16 51 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -82.54 395.19 1.04 -81.50 By element: Atomic # 1 Polarization: 39.51 SS G_CDS: -0.39 Total: 39.13 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 6.25 Total: 13.32 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -6.63 Total: -122.82 kcal Atomic # 8 Polarization: -52.01 SS G_CDS: -0.09 Total: -52.09 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 1.90 Total: 40.97 kcal Total: -82.54 1.04 -81.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207913826.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.426 kcal (2) G-P(sol) polarization free energy of solvation -82.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds