Wall clock time and date at job start Sat Apr 11 2020 01:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47045 * 2 1 4 4 H 1.09000 * 109.46851 * 54.99654 * 3 2 1 5 5 C 1.52999 * 109.47012 * 294.99882 * 3 2 1 6 6 C 1.52997 * 109.47150 * 174.99882 * 3 2 1 7 7 C 1.50697 * 109.46992 * 185.00208 * 6 3 2 8 8 O 1.21277 * 119.99916 * 359.97438 * 7 6 3 9 9 N 1.34778 * 120.00157 * 180.02562 * 7 6 3 10 10 C 1.46931 * 120.63062 * 0.02562 * 9 7 6 11 11 C 1.53186 * 108.77629 * 126.36667 * 10 9 7 12 12 C 1.53051 * 109.31180 * 54.63793 * 11 10 9 13 13 C 1.53037 * 109.53521 * 298.63199 * 12 11 10 14 14 H 1.08997 * 109.52646 * 301.39800 * 13 12 11 15 15 N 1.46895 * 109.49533 * 181.31362 * 13 12 11 16 16 C 1.46906 * 110.99789 * 85.16237 * 15 13 12 17 17 C 1.50703 * 109.47109 * 179.97438 * 16 15 13 18 18 O 1.21296 * 119.99996 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99978 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99848 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00405 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99358 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99517 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 120.00588 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47149 * 89.99828 * 24 22 20 26 26 H 1.48498 * 109.47388 * 209.99797 * 24 22 20 27 27 H 1.48501 * 109.46930 * 330.00192 * 24 22 20 28 28 C 1.46924 * 120.63407 * 179.97438 * 9 7 6 29 29 H 1.08995 * 109.47046 * 60.00362 * 1 2 3 30 30 H 1.09000 * 109.46780 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47274 * 299.99996 * 1 2 3 32 32 H 1.09002 * 109.47362 * 240.00406 * 2 1 3 33 33 H 1.09000 * 109.47288 * 120.00026 * 2 1 3 34 34 H 1.08998 * 109.47064 * 59.99721 * 5 3 2 35 35 H 1.09000 * 109.46970 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.47126 * 299.99603 * 5 3 2 37 37 H 1.08995 * 109.47286 * 64.99913 * 6 3 2 38 38 H 1.09002 * 109.46969 * 305.00014 * 6 3 2 39 39 H 1.09002 * 109.58684 * 246.16230 * 10 9 7 40 40 H 1.09000 * 109.58235 * 6.43526 * 10 9 7 41 41 H 1.09006 * 109.49906 * 174.58468 * 11 10 9 42 42 H 1.09000 * 109.50159 * 294.65440 * 11 10 9 43 43 H 1.08999 * 109.45727 * 178.60902 * 12 11 10 44 44 H 1.08997 * 109.45624 * 58.65052 * 12 11 10 45 45 H 1.00902 * 111.00273 * 209.11760 * 15 13 12 46 46 H 1.08992 * 109.47459 * 299.99826 * 16 15 13 47 47 H 1.09004 * 109.47040 * 59.99976 * 16 15 13 48 48 H 0.97002 * 119.99767 * 359.97438 * 19 17 16 49 49 H 0.96997 * 120.00211 * 180.02562 * 23 22 20 50 50 H 1.09004 * 109.58622 * 113.84115 * 28 9 7 51 51 H 1.09000 * 109.70398 * 353.49153 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4444 0.1257 7 6 4.0568 2.8634 0.2493 8 8 3.2659 3.7827 0.2374 9 7 5.3760 3.1110 0.3720 10 6 6.3465 2.0079 0.3863 11 6 7.4092 2.2723 -0.6849 12 6 8.0253 3.6546 -0.4564 13 6 6.9391 4.7256 -0.5790 14 1 6.4817 4.6692 -1.5667 15 7 7.5370 6.0541 -0.3906 16 6 8.0902 6.5660 -1.6516 17 6 8.6929 7.9276 -1.4197 18 8 8.6649 8.4227 -0.3128 19 7 9.2631 8.5952 -2.4423 20 6 9.8118 9.8337 -2.2312 21 1 9.7869 10.2746 -1.2456 22 6 10.4001 10.5217 -3.2855 23 7 10.9257 11.7090 -3.0833 24 14 10.4439 9.7589 -4.9900 25 1 9.2241 10.1526 -5.7400 26 1 11.6474 10.2380 -5.7160 27 1 10.4947 8.2797 -4.8692 28 6 5.8710 4.4890 0.4928 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5489 2.1252 -1.3970 35 1 1.9981 3.1544 -1.3072 36 1 2.0699 1.5876 -2.1491 37 1 4.0029 0.9837 -0.7595 38 1 3.8570 0.8801 1.0114 39 1 6.8211 1.9515 1.3659 40 1 5.8356 1.0690 0.1732 41 1 8.1877 1.5120 -0.6206 42 1 6.9476 2.2379 -1.6717 43 1 8.7992 3.8350 -1.2025 44 1 8.4651 3.6958 0.5401 45 1 6.8672 6.7002 -0.0009 46 1 8.8598 5.8845 -2.0140 47 1 7.2945 6.6426 -2.3928 48 1 9.2857 8.1991 -3.3275 49 1 11.3360 12.1895 -3.8192 50 1 6.3068 4.6354 1.4812 51 1 5.0480 5.1891 0.3491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207913827.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:33:49 Heat of formation + Delta-G solvation = -85.764089 kcal Electronic energy + Delta-G solvation = -27905.585233 eV Core-core repulsion = 24032.160245 eV Total energy + Delta-G solvation = -3873.424988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.63394 -38.72963 -37.98688 -36.53141 -35.22497 -33.90914 -32.45848 -31.68234 -31.37474 -30.10990 -28.03036 -26.50176 -25.62535 -24.28699 -23.57321 -22.73891 -20.84520 -20.16611 -19.43179 -19.07657 -18.33533 -17.42294 -16.33864 -16.28083 -15.79248 -15.42869 -15.26249 -15.03511 -14.76628 -14.70402 -14.37553 -13.98359 -13.89513 -13.81082 -13.52462 -13.10436 -13.05591 -12.80859 -12.66265 -12.47186 -12.27768 -12.15043 -12.11219 -11.93719 -11.69224 -11.52672 -11.30721 -11.20192 -11.06709 -10.94172 -10.90407 -10.89988 -10.80532 -10.59359 -9.97432 -9.87528 -9.57089 -8.89038 -8.58935 -8.21922 -8.16046 -6.30769 -3.82165 2.39723 2.66991 3.02494 3.06774 3.14959 3.74129 4.03899 4.10582 4.14337 4.37351 4.50073 4.51316 4.63610 4.67644 4.76617 4.80876 4.89376 4.92940 5.05136 5.08083 5.16457 5.21071 5.24006 5.30630 5.34343 5.36799 5.42188 5.48496 5.57725 5.61987 5.62480 5.70296 5.71638 5.73063 5.78477 5.80900 5.88413 5.90825 5.97496 6.07068 6.15775 6.20678 6.25635 7.05633 7.15906 7.52880 7.58509 7.95678 8.14795 8.59989 8.95250 9.42659 9.82820 10.82363 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.021679 B = 0.002093 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.266874 B =13374.890773 C =13699.517518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.077 4.077 4 H 0.078 0.922 5 C -0.155 4.155 6 C -0.136 4.136 7 C 0.514 3.486 8 O -0.536 6.536 9 N -0.611 5.611 10 C 0.106 3.894 11 C -0.135 4.135 12 C -0.110 4.110 13 C 0.075 3.925 14 H 0.045 0.955 15 N -0.661 5.661 16 C 0.050 3.950 17 C 0.450 3.550 18 O -0.564 6.564 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.270 1.270 28 C 0.110 3.890 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.353 0.647 46 H 0.087 0.913 47 H 0.045 0.955 48 H 0.370 0.630 49 H 0.273 0.727 50 H 0.079 0.921 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.619 -28.649 2.726 32.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.096 4.096 4 H 0.096 0.904 5 C -0.212 4.212 6 C -0.176 4.176 7 C 0.303 3.697 8 O -0.413 6.413 9 N -0.345 5.345 10 C -0.017 4.017 11 C -0.174 4.174 12 C -0.148 4.148 13 C -0.036 4.036 14 H 0.063 0.937 15 N -0.294 5.294 16 C -0.083 4.083 17 C 0.236 3.764 18 O -0.445 6.445 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.013 4.013 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.173 0.827 46 H 0.105 0.895 47 H 0.063 0.937 48 H 0.203 0.797 49 H 0.084 0.916 50 H 0.097 0.903 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.355 -27.850 3.617 31.540 hybrid contribution -0.391 -0.264 -2.022 2.076 sum -14.745 -28.114 1.595 31.786 Atomic orbital electron populations 1.21806 0.95682 1.01446 1.02176 1.21592 0.96261 0.96038 1.01833 1.20941 0.92636 0.96022 0.99990 0.90372 1.21995 1.01253 1.02163 0.95764 1.21799 0.97824 0.93977 1.03958 1.20740 0.81520 0.91814 0.75675 1.90678 1.54069 1.46706 1.49831 1.48110 1.06056 1.07408 1.72944 1.21806 0.90623 0.89380 0.99909 1.21943 0.98225 0.98246 0.98970 1.21556 0.97665 0.92267 1.03353 1.21828 0.93690 0.90602 0.97449 0.93705 1.60083 1.40215 1.02939 1.26197 1.21746 0.99252 0.96232 0.91082 1.19688 0.84253 0.86892 0.85592 1.90570 1.61225 1.69235 1.23505 1.42204 1.53313 1.18176 1.09314 1.19438 1.33098 0.91324 0.99502 0.86258 1.25040 0.97062 0.95795 0.98278 1.69621 1.37666 1.12173 1.32647 0.86670 0.78852 0.79219 0.84638 1.19656 1.20155 1.19509 1.21703 0.97186 0.83016 0.99395 0.92357 0.92890 0.92694 0.91988 0.92058 0.92666 0.90732 0.93466 0.88951 0.88986 0.90955 0.89726 0.90308 0.91618 0.91403 0.90732 0.82678 0.89500 0.93731 0.79716 0.91618 0.90324 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.67 37.16 0.36 -0.52 16 2 C -0.12 -0.68 5.40 -26.73 -0.14 -0.82 16 3 C -0.08 -0.58 2.04 -90.62 -0.18 -0.77 16 4 H 0.08 0.72 7.96 -51.93 -0.41 0.30 16 5 C -0.15 -1.34 8.69 37.16 0.32 -1.02 16 6 C -0.14 -0.93 3.52 -27.89 -0.10 -1.02 16 7 C 0.51 5.38 7.42 -10.99 -0.08 5.30 16 8 O -0.54 -7.63 13.38 5.56 0.07 -7.56 16 9 N -0.61 -5.82 2.97 -172.80 -0.51 -6.34 16 10 C 0.11 0.68 6.34 -3.71 -0.02 0.66 16 11 C -0.14 -0.94 6.08 -26.61 -0.16 -1.11 16 12 C -0.11 -1.10 5.40 -26.69 -0.14 -1.25 16 13 C 0.08 0.89 2.64 -67.62 -0.18 0.71 16 14 H 0.04 0.55 7.80 -51.93 -0.41 0.15 16 15 N -0.66 -10.17 5.94 -107.89 -0.64 -10.81 16 16 C 0.05 0.83 5.97 -4.97 -0.03 0.80 16 17 C 0.45 10.29 7.82 -10.98 -0.09 10.20 16 18 O -0.56 -15.23 15.78 5.54 0.09 -15.14 16 19 N -0.59 -14.18 5.09 -10.96 -0.06 -14.24 16 20 C -0.30 -8.70 10.16 -14.93 -0.15 -8.85 16 21 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.88 13.96 55.50 0.77 -25.11 16 24 Si 0.88 19.47 27.74 -169.99 -4.71 14.76 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.27 -5.43 6.52 56.52 0.37 -5.07 16 28 C 0.11 1.25 5.69 -3.74 -0.02 1.23 16 29 H 0.06 0.35 6.56 -51.93 -0.34 0.01 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.05 0.44 6.56 -51.93 -0.34 0.10 16 35 H 0.07 0.85 5.95 -51.93 -0.31 0.54 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.50 7.69 -51.93 -0.40 0.10 16 38 H 0.09 0.46 7.94 -51.93 -0.41 0.05 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.36 5.93 -51.93 -0.31 0.05 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.72 7.44 -51.93 -0.39 0.34 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.35 5.73 8.06 -39.29 -0.32 5.41 16 46 H 0.09 1.30 7.43 -51.93 -0.39 0.91 16 47 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 48 H 0.37 7.80 5.76 -40.82 -0.24 7.57 16 49 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 50 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 51 H 0.09 1.21 7.01 -51.93 -0.36 0.84 16 LS Contribution 395.19 15.07 5.96 5.96 Total: -1.00 -34.04 395.19 -8.57 -42.61 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -8.82 Total: 11.26 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -0.72 Total: 4.59 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.44 Total: -56.49 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: 0.16 Total: -22.70 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.71 Total: 14.76 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.04 -8.57 -42.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207913827.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.149 kcal (2) G-P(sol) polarization free energy of solvation -34.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds