Wall clock time and date at job start Sat Apr 11 2020 01:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47045 * 2 1 4 4 H 1.09000 * 109.46851 * 54.99654 * 3 2 1 5 5 C 1.52999 * 109.47012 * 294.99882 * 3 2 1 6 6 C 1.52997 * 109.47150 * 174.99882 * 3 2 1 7 7 C 1.50697 * 109.46992 * 185.00208 * 6 3 2 8 8 O 1.21277 * 119.99916 * 359.97438 * 7 6 3 9 9 N 1.34778 * 120.00157 * 180.02562 * 7 6 3 10 10 C 1.46931 * 120.63062 * 0.02562 * 9 7 6 11 11 C 1.53186 * 108.77629 * 126.36667 * 10 9 7 12 12 C 1.53051 * 109.31180 * 54.63793 * 11 10 9 13 13 C 1.53037 * 109.53521 * 298.63199 * 12 11 10 14 14 H 1.08997 * 109.52646 * 301.39800 * 13 12 11 15 15 N 1.46895 * 109.49533 * 181.31362 * 13 12 11 16 16 C 1.46906 * 110.99789 * 85.16237 * 15 13 12 17 17 C 1.50703 * 109.47109 * 179.97438 * 16 15 13 18 18 O 1.21296 * 119.99996 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99978 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99848 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00405 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99358 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99517 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 120.00588 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.47149 * 89.99828 * 24 22 20 26 26 H 1.48498 * 109.47388 * 209.99797 * 24 22 20 27 27 H 1.48501 * 109.46930 * 330.00192 * 24 22 20 28 28 C 1.46924 * 120.63407 * 179.97438 * 9 7 6 29 29 H 1.08995 * 109.47046 * 60.00362 * 1 2 3 30 30 H 1.09000 * 109.46780 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47274 * 299.99996 * 1 2 3 32 32 H 1.09002 * 109.47362 * 240.00406 * 2 1 3 33 33 H 1.09000 * 109.47288 * 120.00026 * 2 1 3 34 34 H 1.08998 * 109.47064 * 59.99721 * 5 3 2 35 35 H 1.09000 * 109.46970 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.47126 * 299.99603 * 5 3 2 37 37 H 1.08995 * 109.47286 * 64.99913 * 6 3 2 38 38 H 1.09002 * 109.46969 * 305.00014 * 6 3 2 39 39 H 1.09002 * 109.58684 * 246.16230 * 10 9 7 40 40 H 1.09000 * 109.58235 * 6.43526 * 10 9 7 41 41 H 1.09006 * 109.49906 * 174.58468 * 11 10 9 42 42 H 1.09000 * 109.50159 * 294.65440 * 11 10 9 43 43 H 1.08999 * 109.45727 * 178.60902 * 12 11 10 44 44 H 1.08997 * 109.45624 * 58.65052 * 12 11 10 45 45 H 1.00902 * 111.00273 * 209.11760 * 15 13 12 46 46 H 1.08992 * 109.47459 * 299.99826 * 16 15 13 47 47 H 1.09004 * 109.47040 * 59.99976 * 16 15 13 48 48 H 0.97002 * 119.99767 * 359.97438 * 19 17 16 49 49 H 0.96997 * 120.00211 * 180.02562 * 23 22 20 50 50 H 1.09004 * 109.58622 * 113.84115 * 28 9 7 51 51 H 1.09000 * 109.70398 * 353.49153 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4444 0.1257 7 6 4.0568 2.8634 0.2493 8 8 3.2659 3.7827 0.2374 9 7 5.3760 3.1110 0.3720 10 6 6.3465 2.0079 0.3863 11 6 7.4092 2.2723 -0.6849 12 6 8.0253 3.6546 -0.4564 13 6 6.9391 4.7256 -0.5790 14 1 6.4817 4.6692 -1.5667 15 7 7.5370 6.0541 -0.3906 16 6 8.0902 6.5660 -1.6516 17 6 8.6929 7.9276 -1.4197 18 8 8.6649 8.4227 -0.3128 19 7 9.2631 8.5952 -2.4423 20 6 9.8118 9.8337 -2.2312 21 1 9.7869 10.2746 -1.2456 22 6 10.4001 10.5217 -3.2855 23 7 10.9257 11.7090 -3.0833 24 14 10.4439 9.7589 -4.9900 25 1 9.2241 10.1526 -5.7400 26 1 11.6474 10.2380 -5.7160 27 1 10.4947 8.2797 -4.8692 28 6 5.8710 4.4890 0.4928 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5489 2.1252 -1.3970 35 1 1.9981 3.1544 -1.3072 36 1 2.0699 1.5876 -2.1491 37 1 4.0029 0.9837 -0.7595 38 1 3.8570 0.8801 1.0114 39 1 6.8211 1.9515 1.3659 40 1 5.8356 1.0690 0.1732 41 1 8.1877 1.5120 -0.6206 42 1 6.9476 2.2379 -1.6717 43 1 8.7992 3.8350 -1.2025 44 1 8.4651 3.6958 0.5401 45 1 6.8672 6.7002 -0.0009 46 1 8.8598 5.8845 -2.0140 47 1 7.2945 6.6426 -2.3928 48 1 9.2857 8.1991 -3.3275 49 1 11.3360 12.1895 -3.8192 50 1 6.3068 4.6354 1.4812 51 1 5.0480 5.1891 0.3491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207913827.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:33:48 Heat of formation + Delta-G solvation = -110.878367 kcal Electronic energy + Delta-G solvation = -27906.674270 eV Core-core repulsion = 24032.160245 eV Total energy + Delta-G solvation = -3874.514024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.41515 -40.36162 -39.04056 -37.17747 -36.41324 -35.82337 -33.78094 -33.23592 -32.06028 -30.98066 -28.79335 -27.93323 -26.43478 -25.62109 -24.47544 -23.51562 -21.60772 -21.34270 -20.81505 -20.33469 -19.75161 -18.22994 -17.79597 -17.20302 -16.92784 -16.62424 -16.52918 -15.98315 -15.78096 -15.59305 -15.36737 -15.17249 -14.96033 -14.76443 -14.57907 -14.32161 -14.15015 -13.96719 -13.80436 -13.46422 -13.35803 -13.31714 -12.95806 -12.79557 -12.73760 -12.43640 -12.37576 -12.18245 -12.00900 -11.94548 -11.81446 -11.64126 -11.57304 -11.53712 -11.49345 -11.38071 -10.67115 -10.47277 -10.27399 -9.69188 -9.41577 -8.43088 -6.04361 1.28667 1.34076 1.43243 1.63964 1.91172 1.93030 2.21475 2.71346 3.12854 3.31332 3.52507 3.77529 3.84156 3.91616 3.99844 4.05194 4.09757 4.15542 4.25478 4.26953 4.36788 4.46355 4.48535 4.51202 4.61858 4.67248 4.69594 4.73275 4.78627 4.82261 4.86263 4.92444 5.00892 5.09185 5.15925 5.19197 5.22043 5.25499 5.33092 5.37257 5.48331 5.51475 5.54732 5.60288 5.87505 5.99955 6.26378 6.44083 6.57069 6.85321 7.20183 7.36571 7.92834 8.74515 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.021679 B = 0.002093 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.266874 B =13374.890773 C =13699.517518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C -0.076 4.076 4 H 0.054 0.946 5 C -0.152 4.152 6 C -0.128 4.128 7 C 0.505 3.495 8 O -0.584 6.584 9 N -0.609 5.609 10 C 0.100 3.900 11 C -0.127 4.127 12 C -0.109 4.109 13 C 0.082 3.918 14 H 0.046 0.954 15 N -0.676 5.676 16 C 0.065 3.935 17 C 0.448 3.552 18 O -0.613 6.613 19 N -0.589 5.589 20 C -0.331 4.331 21 H 0.055 0.945 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.965 3.035 25 H -0.258 1.258 26 H -0.273 1.273 27 H -0.231 1.231 28 C 0.115 3.885 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.041 0.959 36 H 0.060 0.940 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.081 0.919 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.343 0.657 46 H 0.116 0.884 47 H 0.071 0.929 48 H 0.390 0.610 49 H 0.280 0.720 50 H 0.074 0.926 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.573 -33.583 0.387 36.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.095 4.095 4 H 0.072 0.928 5 C -0.209 4.209 6 C -0.167 4.167 7 C 0.296 3.704 8 O -0.465 6.465 9 N -0.342 5.342 10 C -0.021 4.021 11 C -0.165 4.165 12 C -0.148 4.148 13 C -0.028 4.028 14 H 0.064 0.936 15 N -0.309 5.309 16 C -0.067 4.067 17 C 0.236 3.764 18 O -0.498 6.498 19 N -0.231 5.231 20 C -0.460 4.460 21 H 0.073 0.927 22 C -0.214 4.214 23 N -0.573 5.573 24 Si 0.785 3.215 25 H -0.183 1.183 26 H -0.198 1.198 27 H -0.154 1.154 28 C -0.009 4.009 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.099 0.901 40 H 0.136 0.864 41 H 0.122 0.878 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.162 0.838 46 H 0.134 0.866 47 H 0.089 0.911 48 H 0.225 0.775 49 H 0.089 0.911 50 H 0.092 0.908 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.298 -32.845 1.282 35.845 hybrid contribution -0.435 1.347 -1.141 1.818 sum -14.732 -31.498 0.141 34.774 Atomic orbital electron populations 1.21832 0.96119 1.01929 1.01543 1.21550 0.95870 0.94511 1.03098 1.20910 0.93403 0.96980 0.98235 0.92787 1.21948 1.01268 1.00574 0.97143 1.21853 0.97005 0.91530 1.06312 1.21513 0.81308 0.92989 0.74620 1.90669 1.55348 1.48473 1.51978 1.48231 1.06547 1.07199 1.72256 1.22115 0.90184 0.89384 1.00417 1.21919 0.98818 0.96663 0.99143 1.21571 0.96927 0.93437 1.02830 1.21869 0.94368 0.89179 0.97396 0.93629 1.60147 1.40736 1.04222 1.25796 1.21649 1.00423 0.92357 0.92298 1.20920 0.82447 0.88608 0.84422 1.90548 1.62564 1.70990 1.25669 1.42017 1.53550 1.16893 1.10652 1.19014 1.35597 0.93774 0.97597 0.92694 1.26132 0.95439 0.95969 1.03821 1.69804 1.38473 1.14218 1.34851 0.85361 0.79246 0.80307 0.76586 1.18262 1.19816 1.15380 1.21463 0.96157 0.84254 0.99065 0.92959 0.91801 0.93475 0.90684 0.90690 0.92713 0.93945 0.92130 0.86387 0.86275 0.90083 0.86433 0.87769 0.91358 0.91670 0.91545 0.83837 0.86642 0.91100 0.77471 0.91090 0.90812 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.67 71.98 0.70 -0.84 16 2 C -0.11 -0.95 5.40 30.60 0.17 -0.79 16 3 C -0.08 -1.03 2.04 -10.79 -0.02 -1.06 16 4 H 0.05 0.99 7.96 -2.39 -0.02 0.97 16 5 C -0.15 -2.54 8.69 71.98 0.63 -1.92 16 6 C -0.13 -1.35 3.52 29.85 0.11 -1.24 16 7 C 0.51 10.00 7.42 87.66 0.65 10.65 16 8 O -0.58 -17.22 13.38 -3.02 -0.04 -17.26 16 9 N -0.61 -10.55 2.97 -819.00 -2.43 -12.98 16 10 C 0.10 0.91 6.34 86.36 0.55 1.45 16 11 C -0.13 -1.25 6.08 30.67 0.19 -1.06 16 12 C -0.11 -1.90 5.40 30.62 0.17 -1.74 16 13 C 0.08 1.84 2.64 44.98 0.12 1.96 16 14 H 0.05 1.03 7.80 -2.39 -0.02 1.02 16 15 N -0.68 -20.59 5.94 -495.26 -2.94 -23.53 16 16 C 0.07 2.06 5.97 85.56 0.51 2.57 16 17 C 0.45 20.70 7.82 87.66 0.69 21.38 16 18 O -0.61 -34.76 15.78 -3.08 -0.05 -34.81 16 19 N -0.59 -28.28 5.09 -306.98 -1.56 -29.84 16 20 C -0.33 -19.67 10.16 84.04 0.85 -18.82 16 21 H 0.05 3.89 7.39 -2.91 -0.02 3.87 16 22 C -0.01 -0.83 5.50 84.93 0.47 -0.37 16 23 N -0.93 -56.73 13.96 21.66 0.30 -56.43 16 24 Si 0.97 39.05 27.74 68.60 1.90 40.95 16 25 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 27 H -0.23 -7.82 6.52 99.48 0.65 -7.17 16 28 C 0.11 2.61 5.69 86.35 0.49 3.10 16 29 H 0.05 0.57 6.56 -2.39 -0.02 0.55 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.05 0.88 6.56 -2.39 -0.02 0.86 16 35 H 0.04 1.00 5.95 -2.39 -0.01 0.98 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.12 0.70 7.69 -2.39 -0.02 0.68 16 38 H 0.12 0.66 7.94 -2.39 -0.02 0.64 16 39 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.12 0.34 5.93 -2.39 -0.01 0.32 16 41 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 42 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.06 1.18 7.44 -2.39 -0.02 1.16 16 44 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.34 11.53 8.06 -89.69 -0.72 10.81 16 46 H 0.12 3.05 7.43 -2.39 -0.02 3.03 16 47 H 0.07 1.92 8.06 -2.38 -0.02 1.90 16 48 H 0.39 15.44 5.76 -92.71 -0.53 14.91 16 49 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 50 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 51 H 0.07 1.85 7.01 -2.39 -0.02 1.83 16 Total: -1.00 -82.53 395.19 1.04 -81.49 By element: Atomic # 1 Polarization: 39.53 SS G_CDS: -0.39 Total: 39.14 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 6.25 Total: 13.28 kcal Atomic # 7 Polarization: -116.15 SS G_CDS: -6.63 Total: -122.79 kcal Atomic # 8 Polarization: -51.99 SS G_CDS: -0.09 Total: -52.08 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 1.90 Total: 40.95 kcal Total: -82.53 1.04 -81.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207913827.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.388 kcal (2) G-P(sol) polarization free energy of solvation -82.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds