Wall clock time and date at job start Sat Apr 11 2020 01:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47150 * 2 1 4 4 N 1.46501 * 109.47073 * 120.00244 * 2 1 3 5 5 C 1.34781 * 120.00267 * 84.99136 * 4 2 1 6 6 O 1.21277 * 119.99642 * 0.02562 * 5 4 2 7 7 C 1.50692 * 119.99973 * 179.97438 * 5 4 2 8 8 C 1.53005 * 109.47189 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47318 * 180.02562 * 8 7 5 10 10 C 1.50705 * 109.46814 * 179.97438 * 9 8 7 11 11 O 1.21271 * 119.99939 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99400 * 179.97438 * 10 9 8 13 13 C 1.46926 * 120.63278 * 0.02562 * 12 10 9 14 14 C 1.53191 * 108.89109 * 126.46534 * 13 12 10 15 15 C 1.53044 * 109.31440 * 54.56430 * 14 13 12 16 16 C 1.53040 * 109.53662 * 298.63203 * 15 14 13 17 17 H 1.08996 * 109.49892 * 301.41776 * 16 15 14 18 18 N 1.46492 * 109.49822 * 181.31643 * 16 15 14 19 19 C 1.36936 * 120.00090 * 84.99734 * 18 16 15 20 20 H 1.08002 * 120.00231 * 0.02562 * 19 18 16 21 21 C 1.38809 * 120.00163 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00151 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00081 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47213 * 60.00368 * 23 21 19 25 25 H 1.48503 * 109.47179 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47128 * 300.00273 * 23 21 19 27 27 C 1.46957 * 120.64915 * 179.81885 * 12 10 9 28 28 H 1.09004 * 109.47464 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47088 * 300.00144 * 1 2 3 30 30 H 1.08998 * 109.47153 * 59.99409 * 1 2 3 31 31 H 1.08997 * 109.47165 * 239.99546 * 2 1 3 32 32 H 1.09003 * 109.46977 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47191 * 300.00070 * 3 2 1 34 34 H 1.08998 * 109.47175 * 60.00640 * 3 2 1 35 35 H 0.96999 * 119.99727 * 264.99991 * 4 2 1 36 36 H 1.08998 * 109.47647 * 60.00729 * 7 5 4 37 37 H 1.09004 * 109.47407 * 300.00344 * 7 5 4 38 38 H 1.08998 * 109.46831 * 59.99494 * 8 7 5 39 39 H 1.09004 * 109.46627 * 300.00087 * 8 7 5 40 40 H 1.08994 * 109.47206 * 59.99478 * 9 8 7 41 41 H 1.09004 * 109.47091 * 299.99494 * 9 8 7 42 42 H 1.09002 * 109.58861 * 6.60537 * 13 12 10 43 43 H 1.08996 * 109.58519 * 246.32428 * 13 12 10 44 44 H 1.09003 * 109.49294 * 174.51508 * 14 13 12 45 45 H 1.08997 * 109.50161 * 294.61021 * 14 13 12 46 46 H 1.08994 * 109.45986 * 58.65006 * 15 14 13 47 47 H 1.09001 * 109.45959 * 178.62334 * 15 14 13 48 48 H 0.97003 * 120.00393 * 264.99866 * 18 16 15 49 49 H 0.96993 * 120.00461 * 180.02562 * 22 21 19 50 50 H 1.09001 * 109.46843 * 113.75181 * 27 12 10 51 51 H 1.08997 * 109.71602 * 353.46674 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1469 -2.0323 1.1944 6 8 1.8587 -2.6678 0.2025 7 6 2.6497 -2.7426 2.4246 8 6 2.7015 -4.2485 2.1588 9 6 3.2114 -4.9698 3.4080 10 6 3.2618 -6.4531 3.1462 11 8 2.9228 -6.8902 2.0670 12 7 3.6837 -7.2937 4.1116 13 6 4.0971 -6.7791 5.4242 14 6 3.3118 -7.5143 6.5149 15 6 3.4998 -9.0235 6.3440 16 6 2.9541 -9.4561 4.9812 17 1 1.8992 -9.1910 4.9109 18 7 3.1058 -10.9054 4.8313 19 6 2.1518 -11.7493 5.3341 20 1 1.2872 -11.3464 5.8407 21 6 2.2953 -13.1226 5.1917 22 7 3.3487 -13.6137 4.5738 23 14 0.9935 -14.2738 5.8768 24 1 -0.3133 -13.9813 5.2350 25 1 1.3793 -15.6802 5.5966 26 1 0.8798 -14.0752 7.3441 27 6 3.7348 -8.7429 3.8732 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 2.2490 -0.1824 1.9894 36 1 1.9776 -2.5437 3.2594 37 1 3.6491 -2.3826 2.6691 38 1 3.3738 -4.4471 1.3241 39 1 1.7022 -4.6088 1.9141 40 1 2.5388 -4.7710 4.2423 41 1 4.2106 -4.6096 3.6531 42 1 3.8879 -5.7109 5.4804 43 1 5.1644 -6.9502 5.5641 44 1 3.6794 -7.2106 7.4951 45 1 2.2535 -7.2676 6.4303 46 1 4.5606 -9.2664 6.4040 47 1 2.9618 -9.5482 7.1335 48 1 3.8821 -11.2673 4.3760 49 1 3.4488 -14.5733 4.4740 50 1 4.7724 -9.0766 3.8849 51 1 3.2881 -8.9724 2.9058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210720932.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:34:03 Heat of formation + Delta-G solvation = -111.450476 kcal Electronic energy + Delta-G solvation = -27436.166606 eV Core-core repulsion = 23561.627773 eV Total energy + Delta-G solvation = -3874.538833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.26864 -40.76238 -38.75292 -37.05333 -36.19616 -35.23569 -33.81970 -32.73902 -32.55785 -30.51439 -29.01987 -28.10065 -26.35227 -25.80203 -23.83108 -23.34327 -21.99042 -21.41481 -21.22232 -19.99399 -19.14156 -18.27319 -17.88511 -17.20536 -16.97149 -16.76905 -16.56209 -16.22449 -15.61946 -15.43742 -15.22217 -15.14670 -14.87017 -14.70569 -14.66595 -14.20595 -13.97849 -13.71394 -13.62623 -13.38430 -13.07352 -13.01133 -12.86002 -12.75389 -12.71914 -12.46769 -12.32443 -12.28885 -12.16713 -12.08516 -11.91224 -11.82189 -11.70525 -11.68401 -11.59513 -10.91766 -10.90836 -10.69721 -10.07616 -9.63574 -9.04335 -7.97136 -5.27002 1.44323 1.48169 1.54065 1.68082 1.72020 1.98048 2.32266 2.55137 3.35476 3.57099 3.76099 3.83759 3.97026 4.02067 4.05659 4.10472 4.14337 4.16852 4.17990 4.32194 4.32776 4.37918 4.58109 4.63215 4.65175 4.72489 4.72981 4.75115 4.80302 4.83633 4.86450 4.93562 4.94839 5.06246 5.10667 5.19717 5.20036 5.26679 5.32025 5.40607 5.42847 5.44285 5.55704 5.61059 5.62372 6.24261 6.52003 6.65396 7.24418 7.29829 7.37651 8.03210 8.27406 9.25969 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.023915 B = 0.001877 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.518538 B =14917.331835 C =15418.279514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 C -0.150 4.150 4 N -0.715 5.715 5 C 0.501 3.499 6 O -0.596 6.596 7 C -0.127 4.127 8 C -0.088 4.088 9 C -0.123 4.123 10 C 0.497 3.503 11 O -0.601 6.601 12 N -0.607 5.607 13 C 0.104 3.896 14 C -0.125 4.125 15 C -0.128 4.128 16 C 0.167 3.833 17 H 0.028 0.972 18 N -0.737 5.737 19 C -0.242 4.242 20 H 0.073 0.927 21 C -0.075 4.075 22 N -0.969 5.969 23 Si 0.975 3.025 24 H -0.282 1.282 25 H -0.294 1.294 26 H -0.273 1.273 27 C 0.117 3.883 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.418 0.582 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.042 0.958 39 H 0.038 0.962 40 H 0.131 0.869 41 H 0.136 0.864 42 H 0.131 0.869 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.044 0.956 48 H 0.372 0.628 49 H 0.252 0.748 50 H 0.065 0.935 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.761 36.912 2.834 37.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.024 3.976 3 C -0.208 4.208 4 N -0.369 5.369 5 C 0.289 3.711 6 O -0.476 6.476 7 C -0.166 4.166 8 C -0.127 4.127 9 C -0.162 4.162 10 C 0.288 3.712 11 O -0.482 6.482 12 N -0.339 5.339 13 C -0.017 4.017 14 C -0.163 4.163 15 C -0.169 4.169 16 C 0.058 3.942 17 H 0.046 0.954 18 N -0.377 5.377 19 C -0.374 4.374 20 H 0.091 0.909 21 C -0.267 4.267 22 N -0.619 5.619 23 Si 0.803 3.197 24 H -0.208 1.208 25 H -0.220 1.220 26 H -0.199 1.199 27 C -0.008 4.008 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.256 0.744 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.149 0.851 41 H 0.154 0.846 42 H 0.149 0.851 43 H 0.101 0.899 44 H 0.123 0.877 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.204 0.796 49 H 0.060 0.940 50 H 0.084 0.916 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.229 36.207 1.655 36.265 hybrid contribution -0.450 -1.753 -0.195 1.820 sum 0.779 34.454 1.460 34.494 Atomic orbital electron populations 1.22152 0.95357 1.00999 1.03345 1.20970 0.94218 0.94258 0.88190 1.22003 1.01807 0.92819 1.04139 1.46062 1.66997 1.06413 1.17394 1.21453 0.76553 0.82829 0.90216 1.90737 1.52017 1.67235 1.37647 1.21689 1.05919 0.93363 0.95627 1.20964 1.00922 0.94059 0.96728 1.21761 1.06711 0.87246 1.00464 1.21786 0.75335 0.91097 0.82954 1.90711 1.50608 1.79870 1.27035 1.48281 1.64890 1.05603 1.15160 1.22149 0.99681 1.00476 0.79424 1.21911 1.01029 0.93306 1.00090 1.22073 1.00667 0.96731 0.97386 1.20635 0.96466 0.83134 0.94004 0.95369 1.42499 1.25766 1.00741 1.68680 1.19522 1.00939 0.88316 1.28606 0.90897 1.25582 1.00334 0.98430 1.02364 1.69814 1.30901 1.11872 1.49306 0.85199 0.78437 0.77649 0.78400 1.20829 1.22018 1.19925 1.21505 0.99976 0.80756 0.98517 0.95223 0.90828 0.90723 0.92559 0.91673 0.90367 0.90241 0.74401 0.85206 0.84907 0.93905 0.94316 0.85114 0.84640 0.85143 0.89863 0.87683 0.91889 0.92619 0.93729 0.79580 0.93974 0.91644 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.48 71.98 0.68 -1.34 16 2 C 0.13 1.57 3.18 44.99 0.14 1.71 16 3 C -0.15 -0.77 9.38 71.98 0.68 -0.09 16 4 N -0.72 -7.58 5.08 -442.55 -2.25 -9.83 16 5 C 0.50 9.08 7.79 87.65 0.68 9.76 16 6 O -0.60 -18.42 15.64 -3.02 -0.05 -18.47 16 7 C -0.13 -1.27 5.70 29.85 0.17 -1.10 16 8 C -0.09 -1.81 3.79 30.60 0.12 -1.69 16 9 C -0.12 -1.85 4.05 29.85 0.12 -1.73 16 10 C 0.50 14.57 7.70 87.66 0.67 15.24 16 11 O -0.60 -25.23 15.40 -3.00 -0.05 -25.28 16 12 N -0.61 -16.89 2.98 -818.90 -2.44 -19.33 16 13 C 0.10 1.74 6.34 86.36 0.55 2.29 16 14 C -0.12 -2.55 6.08 30.67 0.19 -2.36 16 15 C -0.13 -4.22 5.47 30.62 0.17 -4.05 16 16 C 0.17 6.92 2.92 45.06 0.13 7.05 16 17 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 18 N -0.74 -38.84 5.12 -322.65 -1.65 -40.49 16 19 C -0.24 -13.92 9.93 84.03 0.83 -13.08 16 20 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 21 C -0.07 -4.41 5.50 84.86 0.47 -3.95 16 22 N -0.97 -60.83 13.06 21.65 0.28 -60.55 16 23 Si 0.97 47.35 29.55 68.60 2.03 49.37 16 24 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 25 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 26 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 27 C 0.12 4.42 5.89 86.34 0.51 4.93 16 28 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 1.05 7.58 -2.39 -0.02 1.03 16 32 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.42 1.05 8.60 -92.71 -0.80 0.25 16 36 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.13 0.38 8.14 -2.38 -0.02 0.36 16 38 H 0.04 1.16 8.06 -2.39 -0.02 1.14 16 39 H 0.04 1.09 8.06 -2.38 -0.02 1.07 16 40 H 0.13 1.08 7.69 -2.39 -0.02 1.07 16 41 H 0.14 0.97 7.94 -2.38 -0.02 0.95 16 42 H 0.13 0.95 5.93 -2.39 -0.01 0.94 16 43 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.37 21.03 7.80 -92.71 -0.72 20.30 16 49 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 50 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 51 H 0.05 2.41 7.02 -2.39 -0.02 2.39 16 Total: -1.00 -90.29 408.25 1.37 -88.91 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -0.61 Total: 24.09 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 6.11 Total: 11.57 kcal Atomic # 7 Polarization: -124.14 SS G_CDS: -6.06 Total: -130.20 kcal Atomic # 8 Polarization: -43.65 SS G_CDS: -0.09 Total: -43.75 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.37 kcal Total: -90.29 1.37 -88.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210720932.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.538 kcal (2) G-P(sol) polarization free energy of solvation -90.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds