Wall clock time and date at job start Sat Apr 11 2020 01:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46871 * 2 1 4 4 N 1.46499 * 109.47101 * 179.97438 * 3 2 1 5 5 C 1.34775 * 120.00094 * 180.02562 * 4 3 2 6 6 O 1.21287 * 120.00212 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00187 * 180.02562 * 5 4 3 8 8 C 1.53001 * 109.47597 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47457 * 180.02562 * 8 7 5 10 10 C 1.50702 * 109.47067 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99990 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00100 * 180.02562 * 10 9 8 13 13 C 1.47018 * 125.64981 * 179.97438 * 12 10 9 14 14 C 1.54325 * 107.40412 * 178.82520 * 13 12 10 15 15 H 1.09000 * 110.72188 * 96.24097 * 14 13 12 16 16 C 1.52995 * 110.72304 * 219.52316 * 14 13 12 17 17 C 1.55405 * 102.82616 * 337.97548 * 14 13 12 18 18 H 1.09000 * 110.89538 * 277.26533 * 17 14 13 19 19 N 1.46505 * 111.03913 * 153.47072 * 17 14 13 20 20 C 1.36935 * 120.00217 * 161.23025 * 19 17 14 21 21 H 1.08006 * 119.99642 * 359.97438 * 20 19 17 22 22 C 1.38808 * 120.00007 * 180.02562 * 20 19 17 23 23 N 1.31620 * 120.00356 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99913 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47230 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47384 * 120.00033 * 24 22 20 27 27 H 1.48504 * 109.46904 * 239.99911 * 24 22 20 28 28 C 1.47426 * 125.64500 * 359.95253 * 12 10 9 29 29 H 1.08996 * 109.47112 * 299.99544 * 1 2 3 30 30 H 1.09002 * 109.47305 * 59.99765 * 1 2 3 31 31 H 1.09005 * 109.46583 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46905 * 240.00925 * 2 1 3 33 33 H 1.08992 * 109.47351 * 120.00231 * 2 1 3 34 34 H 1.09009 * 109.46741 * 60.00593 * 3 2 1 35 35 H 1.08993 * 109.47629 * 300.00701 * 3 2 1 36 36 H 0.96998 * 120.00473 * 0.02562 * 4 3 2 37 37 H 1.09005 * 109.47057 * 60.00030 * 7 5 4 38 38 H 1.09003 * 109.47302 * 300.00717 * 7 5 4 39 39 H 1.08996 * 109.46954 * 59.99952 * 8 7 5 40 40 H 1.09002 * 109.46872 * 300.00094 * 8 7 5 41 41 H 1.08996 * 109.47291 * 59.99897 * 9 8 7 42 42 H 1.09002 * 109.46942 * 299.99789 * 9 8 7 43 43 H 1.09002 * 109.88241 * 298.32048 * 13 12 10 44 44 H 1.09000 * 109.88049 * 59.33177 * 13 12 10 45 45 H 1.08999 * 109.47083 * 58.54334 * 16 14 13 46 46 H 1.09002 * 109.47293 * 178.54343 * 16 14 13 47 47 H 1.09000 * 109.47062 * 298.54438 * 16 14 13 48 48 H 0.96998 * 119.99743 * 341.23259 * 19 17 14 49 49 H 0.96989 * 120.00348 * 180.02562 * 23 22 20 50 50 H 1.08999 * 110.36956 * 323.01018 * 28 12 10 51 51 H 1.09001 * 110.36709 * 85.22211 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1788 2.6098 0.0012 6 8 3.5724 3.6601 0.0018 7 6 5.6858 2.6098 0.0013 8 6 6.1958 4.0523 0.0027 9 6 7.7258 4.0524 0.0021 10 6 8.2281 5.4732 0.0042 11 8 7.4399 6.3950 0.0054 12 7 9.5531 5.7196 0.0035 13 6 10.1772 7.0507 0.0047 14 6 11.7062 6.8437 0.0336 15 1 12.1213 6.8943 -0.9730 16 6 12.3746 7.8716 0.9487 17 6 11.8493 5.4097 0.6151 18 1 11.7911 5.4239 1.7035 19 7 13.0945 4.7819 0.1662 20 6 13.6014 3.7050 0.8434 21 1 13.0832 3.3188 1.7088 22 6 14.7815 3.1106 0.4184 23 7 15.4132 3.5816 -0.6359 24 14 15.4725 1.6411 1.3418 25 1 14.5804 1.3086 2.4815 26 1 15.5597 0.4765 0.4247 27 1 16.8270 1.9705 1.8537 28 6 10.6168 4.6988 0.0019 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6765 1.9564 -0.8898 36 1 3.9900 0.6026 0.0006 37 1 6.0491 2.0965 -0.8890 38 1 6.0491 2.0954 0.8910 39 1 5.8324 4.5653 0.8932 40 1 5.8325 4.5670 -0.8868 41 1 8.0888 3.5396 -0.8885 42 1 8.0894 3.5376 0.8914 43 1 9.8936 7.5940 -0.8967 44 1 9.8618 7.6072 0.8874 45 1 11.9668 7.7812 1.9555 46 1 13.4492 7.6909 0.9743 47 1 12.1838 8.8751 0.5682 48 1 13.5600 5.1291 -0.6108 49 1 16.2376 3.1660 -0.9331 50 1 10.3258 3.8466 0.6161 51 1 10.8309 4.3756 -1.0169 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216432557.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:34:40 Heat of formation + Delta-G solvation = -88.606284 kcal Electronic energy + Delta-G solvation = -27122.723425 eV Core-core repulsion = 23249.175191 eV Total energy + Delta-G solvation = -3873.548234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.08201 -39.70168 -37.63833 -36.21676 -34.29465 -34.07442 -32.97564 -32.48300 -30.76270 -29.17245 -27.51762 -26.74722 -25.66074 -24.02280 -22.61969 -22.02124 -21.35682 -20.38652 -19.89743 -18.93741 -17.25646 -17.19538 -16.69031 -16.48036 -16.23053 -16.05949 -15.60030 -15.11446 -14.79309 -14.25754 -14.01814 -13.75542 -13.55940 -13.33443 -13.13387 -12.99682 -12.98415 -12.76641 -12.65409 -12.55112 -12.14881 -11.97748 -11.84812 -11.64084 -11.60034 -11.46530 -11.37282 -11.14449 -11.03424 -10.82652 -10.75276 -10.62389 -10.25695 -10.07577 -9.94361 -9.82380 -9.57803 -9.38952 -9.05914 -8.31400 -7.12682 -5.89651 -3.20457 2.44974 2.85004 2.88283 3.29152 3.35169 3.41564 3.43455 4.33802 4.45816 4.47608 4.50562 4.60520 4.75029 4.87364 4.90577 5.05249 5.11823 5.13602 5.15076 5.20955 5.28265 5.32382 5.38163 5.46437 5.51118 5.53709 5.58678 5.62799 5.63845 5.72636 5.76943 5.82605 5.93513 6.00580 6.06991 6.10348 6.20244 6.23924 6.33512 6.35820 6.45232 6.54391 6.62035 6.85377 7.18958 7.59168 7.83482 7.99917 8.27600 8.42449 9.39946 9.93916 10.28953 11.32310 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.012470 B = 0.002127 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.877786 B =13160.349172 C =15156.537832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.116 3.884 4 N -0.738 5.738 5 C 0.511 3.489 6 O -0.535 6.535 7 C -0.142 4.142 8 C -0.087 4.087 9 C -0.137 4.137 10 C 0.524 3.476 11 O -0.552 6.552 12 N -0.615 5.615 13 C 0.116 3.884 14 C -0.113 4.113 15 H 0.084 0.916 16 C -0.134 4.134 17 C 0.177 3.823 18 H 0.065 0.935 19 N -0.711 5.711 20 C -0.247 4.247 21 H 0.073 0.927 22 C -0.008 4.008 23 N -0.928 5.928 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.073 3.927 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.401 0.599 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.066 0.934 47 H 0.049 0.951 48 H 0.387 0.613 49 H 0.256 0.744 50 H 0.069 0.931 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.679 -5.454 0.829 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.391 5.391 5 C 0.298 3.702 6 O -0.411 6.411 7 C -0.182 4.182 8 C -0.126 4.126 9 C -0.176 4.176 10 C 0.313 3.687 11 O -0.431 6.431 12 N -0.349 5.349 13 C -0.007 4.007 14 C -0.133 4.133 15 H 0.102 0.898 16 C -0.191 4.191 17 C 0.064 3.936 18 H 0.083 0.917 19 N -0.351 5.351 20 C -0.378 4.378 21 H 0.091 0.909 22 C -0.205 4.205 23 N -0.576 5.576 24 Si 0.738 3.262 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.053 4.053 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.235 0.765 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.068 0.932 48 H 0.222 0.778 49 H 0.066 0.934 50 H 0.088 0.912 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.549 -4.352 0.946 22.985 hybrid contribution 0.915 -1.361 0.108 1.643 sum -21.634 -5.713 1.055 22.401 Atomic orbital electron populations 1.21683 0.94539 1.02190 1.02397 1.21739 0.97049 0.95849 1.02758 1.21393 0.79804 0.97071 1.02457 1.46083 1.07327 1.08910 1.76758 1.20830 0.90518 0.83392 0.75462 1.90739 1.70559 1.31267 1.48503 1.21717 0.91372 1.00416 1.04647 1.21062 0.92564 0.93930 1.05007 1.21643 0.96984 0.94434 1.04586 1.20303 0.80651 0.91522 0.76225 1.90688 1.54656 1.46727 1.50999 1.48578 1.05166 1.08864 1.72319 1.21943 0.92555 0.84795 1.01413 1.22518 0.92888 0.97073 1.00842 0.89783 1.21654 1.01566 0.97276 0.98636 1.21423 0.86194 0.89056 0.96898 0.91738 1.42304 1.22420 1.35552 1.34836 1.19275 1.04529 1.05529 1.08493 0.90934 1.24763 0.97875 0.99750 0.98103 1.69663 1.18906 1.42914 1.26106 0.86128 0.78847 0.82348 0.78880 1.20477 1.21793 1.21793 1.23501 0.88406 0.91519 1.01880 0.92316 0.92321 0.92148 0.91274 0.91272 0.91559 0.91553 0.76538 0.88628 0.88627 0.90483 0.90506 0.88847 0.88825 0.92119 0.91746 0.92843 0.91449 0.93178 0.77844 0.93379 0.91245 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.91 37.16 0.37 -0.27 16 2 C -0.14 -0.62 6.05 -26.73 -0.16 -0.78 16 3 C 0.12 0.83 5.67 -4.04 -0.02 0.81 16 4 N -0.74 -5.43 5.56 -60.30 -0.33 -5.77 16 5 C 0.51 5.42 7.83 -10.99 -0.09 5.34 16 6 O -0.53 -8.19 15.98 5.55 0.09 -8.10 16 7 C -0.14 -1.19 5.70 -27.88 -0.16 -1.35 16 8 C -0.09 -1.04 3.79 -26.73 -0.10 -1.15 16 9 C -0.14 -1.61 4.71 -27.88 -0.13 -1.75 16 10 C 0.52 8.39 7.85 -10.98 -0.09 8.30 16 11 O -0.55 -10.69 16.31 5.56 0.09 -10.60 16 12 N -0.62 -9.76 3.33 -170.50 -0.57 -10.32 16 13 C 0.12 1.77 6.46 -3.07 -0.02 1.75 16 14 C -0.11 -1.77 3.19 -88.65 -0.28 -2.05 16 15 H 0.08 1.35 8.00 -51.93 -0.42 0.93 16 16 C -0.13 -1.89 9.14 37.15 0.34 -1.55 16 17 C 0.18 3.21 3.14 -65.63 -0.21 3.00 16 18 H 0.06 1.21 8.03 -51.93 -0.42 0.79 16 19 N -0.71 -16.19 5.28 -51.20 -0.27 -16.46 16 20 C -0.25 -6.31 9.98 -15.06 -0.15 -6.46 16 21 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 23 N -0.93 -26.44 13.06 55.49 0.72 -25.72 16 24 Si 0.91 21.11 29.55 -169.99 -5.02 16.09 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 28 C 0.07 1.19 6.39 -2.51 -0.02 1.17 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.40 1.75 8.47 -40.82 -0.35 1.41 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 1.07 8.06 -51.93 -0.42 0.66 16 40 H 0.08 1.07 8.06 -51.93 -0.42 0.65 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.09 0.97 7.85 -51.93 -0.41 0.56 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.06 0.97 7.82 -51.93 -0.41 0.57 16 45 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.39 9.46 7.72 -40.82 -0.31 9.14 16 49 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 50 H 0.07 1.07 7.48 -51.93 -0.39 0.68 16 51 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 415.42 15.07 6.26 6.26 Total: -1.00 -33.18 415.42 -9.26 -42.44 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -9.42 Total: 7.48 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -0.81 Total: 4.70 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -0.45 Total: -58.26 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.18 Total: -18.70 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.18 -9.26 -42.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216432557.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.168 kcal (2) G-P(sol) polarization free energy of solvation -33.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds