Wall clock time and date at job start Sat Apr 11 2020 01:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46871 * 2 1 4 4 N 1.46499 * 109.47101 * 179.97438 * 3 2 1 5 5 C 1.34775 * 120.00094 * 180.02562 * 4 3 2 6 6 O 1.21287 * 120.00212 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00187 * 180.02562 * 5 4 3 8 8 C 1.53001 * 109.47597 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47457 * 180.02562 * 8 7 5 10 10 C 1.50702 * 109.47067 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99990 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00100 * 180.02562 * 10 9 8 13 13 C 1.47018 * 125.64981 * 179.97438 * 12 10 9 14 14 C 1.54325 * 107.40412 * 178.82520 * 13 12 10 15 15 H 1.09000 * 110.72188 * 96.24097 * 14 13 12 16 16 C 1.52995 * 110.72304 * 219.52316 * 14 13 12 17 17 C 1.55405 * 102.82616 * 337.97548 * 14 13 12 18 18 H 1.09000 * 110.89538 * 277.26533 * 17 14 13 19 19 N 1.46505 * 111.03913 * 153.47072 * 17 14 13 20 20 C 1.36935 * 120.00217 * 161.23025 * 19 17 14 21 21 H 1.08006 * 119.99642 * 359.97438 * 20 19 17 22 22 C 1.38808 * 120.00007 * 180.02562 * 20 19 17 23 23 N 1.31620 * 120.00356 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99913 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47230 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47384 * 120.00033 * 24 22 20 27 27 H 1.48504 * 109.46904 * 239.99911 * 24 22 20 28 28 C 1.47426 * 125.64500 * 359.95253 * 12 10 9 29 29 H 1.08996 * 109.47112 * 299.99544 * 1 2 3 30 30 H 1.09002 * 109.47305 * 59.99765 * 1 2 3 31 31 H 1.09005 * 109.46583 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46905 * 240.00925 * 2 1 3 33 33 H 1.08992 * 109.47351 * 120.00231 * 2 1 3 34 34 H 1.09009 * 109.46741 * 60.00593 * 3 2 1 35 35 H 1.08993 * 109.47629 * 300.00701 * 3 2 1 36 36 H 0.96998 * 120.00473 * 0.02562 * 4 3 2 37 37 H 1.09005 * 109.47057 * 60.00030 * 7 5 4 38 38 H 1.09003 * 109.47302 * 300.00717 * 7 5 4 39 39 H 1.08996 * 109.46954 * 59.99952 * 8 7 5 40 40 H 1.09002 * 109.46872 * 300.00094 * 8 7 5 41 41 H 1.08996 * 109.47291 * 59.99897 * 9 8 7 42 42 H 1.09002 * 109.46942 * 299.99789 * 9 8 7 43 43 H 1.09002 * 109.88241 * 298.32048 * 13 12 10 44 44 H 1.09000 * 109.88049 * 59.33177 * 13 12 10 45 45 H 1.08999 * 109.47083 * 58.54334 * 16 14 13 46 46 H 1.09002 * 109.47293 * 178.54343 * 16 14 13 47 47 H 1.09000 * 109.47062 * 298.54438 * 16 14 13 48 48 H 0.96998 * 119.99743 * 341.23259 * 19 17 14 49 49 H 0.96989 * 120.00348 * 180.02562 * 23 22 20 50 50 H 1.08999 * 110.36956 * 323.01018 * 28 12 10 51 51 H 1.09001 * 110.36709 * 85.22211 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1788 2.6098 0.0012 6 8 3.5724 3.6601 0.0018 7 6 5.6858 2.6098 0.0013 8 6 6.1958 4.0523 0.0027 9 6 7.7258 4.0524 0.0021 10 6 8.2281 5.4732 0.0042 11 8 7.4399 6.3950 0.0054 12 7 9.5531 5.7196 0.0035 13 6 10.1772 7.0507 0.0047 14 6 11.7062 6.8437 0.0336 15 1 12.1213 6.8943 -0.9730 16 6 12.3746 7.8716 0.9487 17 6 11.8493 5.4097 0.6151 18 1 11.7911 5.4239 1.7035 19 7 13.0945 4.7819 0.1662 20 6 13.6014 3.7050 0.8434 21 1 13.0832 3.3188 1.7088 22 6 14.7815 3.1106 0.4184 23 7 15.4132 3.5816 -0.6359 24 14 15.4725 1.6411 1.3418 25 1 14.5804 1.3086 2.4815 26 1 15.5597 0.4765 0.4247 27 1 16.8270 1.9705 1.8537 28 6 10.6168 4.6988 0.0019 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6765 1.9564 -0.8898 36 1 3.9900 0.6026 0.0006 37 1 6.0491 2.0965 -0.8890 38 1 6.0491 2.0954 0.8910 39 1 5.8324 4.5653 0.8932 40 1 5.8325 4.5670 -0.8868 41 1 8.0888 3.5396 -0.8885 42 1 8.0894 3.5376 0.8914 43 1 9.8936 7.5940 -0.8967 44 1 9.8618 7.6072 0.8874 45 1 11.9668 7.7812 1.9555 46 1 13.4492 7.6909 0.9743 47 1 12.1838 8.8751 0.5682 48 1 13.5600 5.1291 -0.6108 49 1 16.2376 3.1660 -0.9331 50 1 10.3258 3.8466 0.6161 51 1 10.8309 4.3756 -1.0169 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216432557.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:34:39 Heat of formation + Delta-G solvation = -110.942930 kcal Electronic energy + Delta-G solvation = -27123.692015 eV Core-core repulsion = 23249.175191 eV Total energy + Delta-G solvation = -3874.516824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.20099 -40.70643 -39.00110 -36.85665 -35.83570 -35.24868 -33.91371 -33.52247 -32.48538 -30.05299 -29.07141 -27.63099 -26.53800 -25.80849 -23.61149 -22.73110 -22.51853 -21.30924 -21.12702 -20.15533 -19.06425 -18.20280 -17.76323 -17.49670 -17.07259 -16.99741 -16.52771 -16.46830 -15.97012 -15.57346 -15.30784 -14.83295 -14.77888 -14.50604 -14.44871 -14.18364 -13.92833 -13.82843 -13.47102 -13.29890 -13.19426 -13.03242 -12.87269 -12.86132 -12.77335 -12.76280 -12.42938 -12.15824 -12.07689 -12.03973 -11.97059 -11.76428 -11.74331 -11.66787 -11.35595 -11.07021 -10.92485 -10.77607 -10.10669 -9.65764 -9.00495 -7.90689 -5.20256 1.52691 1.54364 1.62922 1.63221 1.65590 1.96962 2.28767 2.60396 3.39863 3.42206 3.72314 3.79590 3.84081 3.93336 3.97418 4.04158 4.07565 4.08972 4.19045 4.34088 4.40931 4.49228 4.52149 4.56072 4.59903 4.65359 4.65673 4.72218 4.73800 4.78789 4.89060 4.90321 4.93144 5.10493 5.14038 5.14396 5.16854 5.23365 5.23928 5.32048 5.35212 5.40117 5.46746 5.51262 5.60063 6.29964 6.55721 6.57347 7.15942 7.28924 7.38096 8.09369 8.33811 9.32330 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.012470 B = 0.002127 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.877786 B =13160.349172 C =15156.537832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.114 3.886 4 N -0.721 5.721 5 C 0.504 3.496 6 O -0.593 6.593 7 C -0.131 4.131 8 C -0.081 4.081 9 C -0.128 4.128 10 C 0.517 3.483 11 O -0.591 6.591 12 N -0.615 5.615 13 C 0.116 3.884 14 C -0.104 4.104 15 H 0.078 0.922 16 C -0.129 4.129 17 C 0.170 3.830 18 H 0.063 0.937 19 N -0.721 5.721 20 C -0.237 4.237 21 H 0.082 0.918 22 C -0.070 4.070 23 N -0.967 5.967 24 Si 0.967 3.033 25 H -0.263 1.263 26 H -0.296 1.296 27 H -0.300 1.300 28 C 0.086 3.914 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.419 0.581 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.049 0.951 47 H 0.071 0.929 48 H 0.376 0.624 49 H 0.250 0.750 50 H 0.086 0.914 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.250 -7.639 1.643 23.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.010 4.010 4 N -0.374 5.374 5 C 0.293 3.707 6 O -0.474 6.474 7 C -0.171 4.171 8 C -0.120 4.120 9 C -0.167 4.167 10 C 0.308 3.692 11 O -0.473 6.473 12 N -0.349 5.349 13 C -0.007 4.007 14 C -0.123 4.123 15 H 0.097 0.903 16 C -0.187 4.187 17 C 0.059 3.941 18 H 0.081 0.919 19 N -0.360 5.360 20 C -0.369 4.369 21 H 0.100 0.900 22 C -0.263 4.263 23 N -0.617 5.617 24 Si 0.797 3.203 25 H -0.187 1.187 26 H -0.223 1.223 27 H -0.228 1.228 28 C -0.039 4.039 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.256 0.744 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.090 0.910 48 H 0.209 0.791 49 H 0.059 0.941 50 H 0.104 0.896 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.155 -6.586 1.790 24.140 hybrid contribution 0.998 -0.600 -0.131 1.172 sum -22.157 -7.186 1.659 23.353 Atomic orbital electron populations 1.21707 0.94432 1.02792 1.02072 1.21681 0.97050 0.93825 1.03794 1.21430 0.79716 0.98782 1.01069 1.45977 1.07506 1.08925 1.74976 1.21306 0.91586 0.83254 0.74589 1.90722 1.71769 1.33423 1.51443 1.21696 0.89533 0.98314 1.07526 1.20920 0.92781 0.95965 1.02337 1.21688 0.96474 0.91789 1.06747 1.21097 0.80107 0.92952 0.75021 1.90676 1.55445 1.48405 1.52755 1.48635 1.05267 1.08840 1.72113 1.21947 0.92050 0.84946 1.01719 1.22429 0.93264 0.95962 1.00672 0.90330 1.21615 1.00211 0.98034 0.98796 1.21573 0.85141 0.90497 0.96870 0.91939 1.42402 1.23893 1.35301 1.34362 1.19650 1.03935 1.05283 1.08012 0.90023 1.25485 0.98833 1.02638 0.99306 1.69808 1.19329 1.44549 1.28044 0.85162 0.77787 0.79271 0.78044 1.18713 1.22288 1.22790 1.23205 0.87490 0.91638 1.01567 0.92695 0.92712 0.91021 0.90178 0.90159 0.93033 0.93046 0.74399 0.85627 0.85540 0.93229 0.93358 0.86567 0.86320 0.91929 0.91385 0.92228 0.93137 0.91012 0.79124 0.94141 0.89604 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 71.98 0.71 -0.39 16 2 C -0.13 -0.90 6.05 30.59 0.19 -0.72 16 3 C 0.11 1.56 5.67 86.38 0.49 2.05 16 4 N -0.72 -9.36 5.56 -463.06 -2.57 -11.93 16 5 C 0.50 10.22 7.83 87.66 0.69 10.90 16 6 O -0.59 -18.76 15.98 -3.05 -0.05 -18.81 16 7 C -0.13 -1.85 5.70 29.85 0.17 -1.68 16 8 C -0.08 -1.87 3.79 30.59 0.12 -1.76 16 9 C -0.13 -2.69 4.71 29.85 0.14 -2.55 16 10 C 0.52 15.90 7.85 87.66 0.69 16.59 16 11 O -0.59 -22.97 16.31 -3.03 -0.05 -23.02 16 12 N -0.62 -18.48 3.33 -811.74 -2.70 -21.18 16 13 C 0.12 3.41 6.46 86.73 0.56 3.97 16 14 C -0.10 -3.11 3.19 -9.52 -0.03 -3.14 16 15 H 0.08 2.47 8.00 -2.39 -0.02 2.45 16 16 C -0.13 -3.49 9.14 71.98 0.66 -2.83 16 17 C 0.17 5.92 3.14 46.48 0.15 6.06 16 18 H 0.06 2.23 8.03 -2.39 -0.02 2.21 16 19 N -0.72 -32.28 5.28 -315.91 -1.67 -33.94 16 20 C -0.24 -11.82 9.98 84.03 0.84 -10.98 16 21 H 0.08 3.86 7.83 -2.91 -0.02 3.83 16 22 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 23 N -0.97 -55.54 13.06 21.65 0.28 -55.26 16 24 Si 0.97 42.92 29.55 68.60 2.03 44.95 16 25 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 26 H -0.30 -13.21 7.11 99.48 0.71 -12.50 16 27 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 28 C 0.09 2.63 6.39 86.86 0.56 3.19 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.42 2.35 8.47 -92.71 -0.79 1.57 16 37 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.05 1.40 8.06 -2.39 -0.02 1.38 16 40 H 0.05 1.37 8.06 -2.39 -0.02 1.35 16 41 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.12 1.96 7.85 -2.39 -0.02 1.94 16 43 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.07 1.96 7.82 -2.39 -0.02 1.94 16 45 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 46 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.38 18.45 7.72 -92.71 -0.72 17.73 16 49 H 0.25 14.05 8.31 -92.72 -0.77 13.28 16 50 H 0.09 2.35 7.48 -2.39 -0.02 2.33 16 51 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -74.03 415.42 1.06 -72.97 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: -0.60 Total: 30.74 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 6.38 Total: 15.48 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -6.66 Total: -122.32 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -0.10 Total: -41.82 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -74.03 1.06 -72.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216432557.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.970 kcal (2) G-P(sol) polarization free energy of solvation -74.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds