Wall clock time and date at job start Sat Apr 11 2020 01:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47415 * 2 1 4 4 H 1.09004 * 109.46939 * 54.99704 * 3 2 1 5 5 C 1.53002 * 109.47022 * 294.99922 * 3 2 1 6 6 C 1.52999 * 109.47157 * 175.00055 * 3 2 1 7 7 H 1.08999 * 109.47275 * 63.39980 * 6 3 2 8 8 N 1.46493 * 109.47063 * 303.39440 * 6 3 2 9 9 C 1.34776 * 120.00357 * 300.00597 * 8 6 3 10 10 C 1.50703 * 120.00047 * 180.02562 * 9 8 6 11 11 O 1.21277 * 120.00029 * 359.97438 * 9 8 6 12 12 C 1.50699 * 109.46839 * 183.39766 * 6 3 2 13 13 O 1.21282 * 120.00011 * 85.18358 * 12 6 3 14 14 N 1.34778 * 120.00188 * 265.17483 * 12 6 3 15 15 C 1.47426 * 125.65139 * 174.78617 * 14 12 6 16 16 C 1.54906 * 104.83361 * 204.09855 * 15 14 12 17 17 H 1.09002 * 111.00494 * 81.06473 * 16 15 14 18 18 C 1.52998 * 111.00264 * 204.91988 * 16 15 14 19 19 C 1.55167 * 101.58189 * 322.99280 * 16 15 14 20 20 H 1.08998 * 110.86970 * 277.06672 * 19 16 15 21 21 N 1.46495 * 110.71966 * 153.86471 * 19 16 15 22 22 C 1.36934 * 119.99942 * 160.02223 * 21 19 16 23 23 H 1.08000 * 119.99863 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00032 * 180.02562 * 22 21 19 25 25 N 1.31626 * 120.00077 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00180 * 180.27584 * 24 22 21 27 27 H 1.48498 * 109.47501 * 179.72545 * 26 24 22 28 28 H 1.48502 * 109.47378 * 299.72628 * 26 24 22 29 29 H 1.48501 * 109.46892 * 59.72621 * 26 24 22 30 30 C 1.47023 * 125.64363 * 354.75498 * 14 12 6 31 31 H 1.08996 * 109.47151 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46983 * 300.00262 * 1 2 3 33 33 H 1.09004 * 109.46913 * 59.99844 * 1 2 3 34 34 H 1.09005 * 109.46983 * 239.99738 * 2 1 3 35 35 H 1.09004 * 109.46913 * 120.00156 * 2 1 3 36 36 H 1.09004 * 109.46827 * 56.18591 * 5 3 2 37 37 H 1.08996 * 109.46871 * 176.18068 * 5 3 2 38 38 H 1.08995 * 109.47384 * 296.18919 * 5 3 2 39 39 H 0.97010 * 119.99993 * 119.99920 * 8 6 3 40 40 H 1.08997 * 109.47332 * 89.99604 * 10 9 8 41 41 H 1.09001 * 109.46933 * 209.99863 * 10 9 8 42 42 H 1.08999 * 109.46945 * 329.98768 * 10 9 8 43 43 H 1.08993 * 110.36544 * 322.93809 * 15 14 12 44 44 H 1.08998 * 110.36087 * 85.15121 * 15 14 12 45 45 H 1.09003 * 109.46867 * 172.19514 * 18 16 15 46 46 H 1.08996 * 109.47158 * 292.19248 * 18 16 15 47 47 H 1.08995 * 109.47413 * 52.20057 * 18 16 15 48 48 H 0.97008 * 120.00219 * 340.02732 * 21 19 16 49 49 H 0.97000 * 119.99537 * 179.97438 * 25 24 22 50 50 H 1.09001 * 109.88875 * 59.55522 * 30 14 12 51 51 H 1.08998 * 110.01111 * 298.45967 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6354 2.1265 -1.3074 6 6 3.5649 1.4442 0.1257 7 1 4.0020 0.9580 -0.7464 8 7 3.9559 0.7184 1.3367 9 6 3.5292 1.1412 2.5431 10 6 3.9319 0.3948 3.7889 11 8 2.8219 2.1228 2.6264 12 6 4.0603 2.8650 0.2097 13 8 4.0908 3.4343 1.2801 14 7 4.4697 3.5029 -0.9048 15 6 4.8731 4.9186 -0.9854 16 6 4.6463 5.3118 -2.4665 17 1 3.5979 5.5450 -2.6527 18 6 5.5458 6.4829 -2.8668 19 6 5.0660 4.0115 -3.2018 20 1 6.1475 3.9705 -3.3314 21 7 4.3864 3.9051 -4.4952 22 6 4.8923 3.0861 -5.4691 23 1 5.7920 2.5183 -5.2834 24 6 4.2487 2.9857 -6.6948 25 7 3.1524 3.6781 -6.9213 26 14 4.9344 1.8626 -8.0206 27 1 4.0662 1.9289 -9.2235 28 1 6.3083 2.2990 -8.3773 29 1 4.9740 0.4668 -7.5151 30 6 4.5887 2.9019 -2.2413 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 0.5540 2.0654 -1.4297 37 1 1.9393 3.1729 -1.2791 38 1 2.1244 1.6285 -2.1446 39 1 4.5219 -0.0666 1.2702 40 1 4.8628 0.8092 4.1758 41 1 3.1494 0.4946 4.5411 42 1 4.0745 -0.6592 3.5508 43 1 4.2499 5.5284 -0.3313 44 1 5.9240 5.0293 -0.7184 45 1 5.4694 6.6489 -3.9414 46 1 5.2297 7.3815 -2.3370 47 1 6.5791 6.2527 -2.6074 48 1 3.5781 4.4149 -4.6619 49 1 2.7029 3.6082 -7.7780 50 1 3.6192 2.5231 -2.5651 51 1 5.3159 2.0903 -2.2219 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216811489.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:34:45 Heat of formation + Delta-G solvation = -65.295047 kcal Electronic energy + Delta-G solvation = -30031.400397 eV Core-core repulsion = 26158.863013 eV Total energy + Delta-G solvation = -3872.537383 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.67863 -39.04456 -37.31646 -36.44049 -34.05298 -33.79878 -32.49626 -30.87136 -30.58913 -29.40056 -27.55452 -26.94318 -25.65946 -24.09705 -23.70209 -21.62659 -21.01017 -20.12040 -19.85205 -18.47441 -17.53336 -17.13470 -16.51473 -16.20392 -15.88130 -15.32729 -15.08805 -14.57865 -14.24445 -14.14939 -13.75939 -13.59148 -13.44843 -13.26346 -13.09737 -12.79838 -12.73522 -12.46460 -12.41622 -12.32589 -12.12324 -11.95909 -11.87885 -11.63171 -11.39881 -11.15526 -11.05294 -10.90459 -10.69219 -10.66389 -10.60804 -10.56190 -10.28948 -10.04633 -9.95819 -9.75276 -9.42243 -9.03252 -8.67481 -8.19881 -7.11248 -5.87336 -3.18140 2.69734 2.90728 3.12611 3.36818 3.41951 3.43155 3.53338 4.48663 4.60249 4.72663 4.86999 4.92254 4.98528 5.08485 5.14241 5.17855 5.23201 5.25119 5.30370 5.47231 5.55110 5.58969 5.62555 5.66752 5.70770 5.73043 5.77790 5.85124 5.90731 5.99037 6.01976 6.04709 6.09360 6.16675 6.20375 6.25695 6.33548 6.39446 6.44465 6.49179 6.57854 6.58757 6.68971 6.88880 7.52284 7.59820 7.89337 8.29877 8.35495 8.56888 9.42054 9.96304 10.31429 11.34358 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.013029 B = 0.003851 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.483917 B = 7268.968795 C = 8473.047051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.098 4.098 4 H 0.096 0.904 5 C -0.153 4.153 6 C 0.142 3.858 7 H 0.103 0.897 8 N -0.725 5.725 9 C 0.507 3.493 10 C -0.170 4.170 11 O -0.502 6.502 12 C 0.515 3.485 13 O -0.519 6.519 14 N -0.614 5.614 15 C 0.116 3.884 16 C -0.113 4.113 17 H 0.083 0.917 18 C -0.133 4.133 19 C 0.178 3.822 20 H 0.064 0.936 21 N -0.711 5.711 22 C -0.249 4.249 23 H 0.071 0.929 24 C -0.006 4.006 25 N -0.928 5.928 26 Si 0.906 3.094 27 H -0.291 1.291 28 H -0.285 1.285 29 H -0.285 1.285 30 C 0.062 3.938 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.401 0.599 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.049 0.951 47 H 0.052 0.948 48 H 0.387 0.613 49 H 0.257 0.743 50 H 0.083 0.917 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.133 -7.018 15.717 17.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.118 4.118 4 H 0.114 0.886 5 C -0.211 4.211 6 C 0.033 3.967 7 H 0.121 0.879 8 N -0.380 5.380 9 C 0.293 3.707 10 C -0.230 4.230 11 O -0.374 6.374 12 C 0.301 3.699 13 O -0.393 6.393 14 N -0.349 5.349 15 C -0.007 4.007 16 C -0.133 4.133 17 H 0.101 0.899 18 C -0.191 4.191 19 C 0.066 3.934 20 H 0.082 0.918 21 N -0.351 5.351 22 C -0.380 4.380 23 H 0.089 0.911 24 C -0.203 4.203 25 N -0.576 5.576 26 Si 0.737 3.263 27 H -0.217 1.217 28 H -0.212 1.212 29 H -0.212 1.212 30 C -0.064 4.064 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.235 0.765 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.221 0.779 49 H 0.067 0.933 50 H 0.101 0.899 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.675 -6.136 16.313 17.442 hybrid contribution 0.485 -0.987 -1.031 1.508 sum 1.160 -7.123 15.282 16.900 Atomic orbital electron populations 1.21800 0.95713 1.01289 1.02124 1.21484 0.96098 0.95657 1.01710 1.21463 0.92173 0.97566 1.00562 0.88628 1.22021 1.01930 1.00992 0.96109 1.20948 0.96811 0.90715 0.88211 0.87895 1.45806 1.54489 1.32004 1.05658 1.20650 0.80619 0.84789 0.84681 1.21858 1.04229 1.00625 0.96252 1.90758 1.35622 1.24783 1.86268 1.20503 0.77780 0.88547 0.83066 1.90760 1.53544 1.67704 1.27341 1.48572 1.65463 1.11880 1.09012 1.22197 0.99546 0.81971 0.96953 1.22614 1.00935 0.96466 0.93256 0.89863 1.21606 0.98635 0.96527 1.02332 1.21221 0.96370 0.90015 0.85798 0.91797 1.42343 1.30583 1.53116 1.09061 1.19175 1.07294 1.18714 0.92770 0.91115 1.24743 0.97526 1.00119 0.97933 1.69650 1.19426 1.44325 1.24150 0.86297 0.78052 0.80461 0.81508 1.21675 1.21202 1.21194 1.23517 1.02334 0.98894 0.81624 0.92979 0.92907 0.92174 0.91901 0.92205 0.91895 0.92203 0.91579 0.76489 0.89238 0.89222 0.90614 0.91252 0.91992 0.91359 0.93213 0.92909 0.77855 0.93298 0.89915 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.67 37.16 0.36 -1.24 16 2 C -0.11 -1.23 5.29 -26.73 -0.14 -1.37 16 3 C -0.10 -1.31 1.69 -90.62 -0.15 -1.47 16 4 H 0.10 1.57 6.27 -51.93 -0.33 1.24 16 5 C -0.15 -2.17 7.45 37.16 0.28 -1.89 16 6 C 0.14 1.89 2.33 -69.09 -0.16 1.73 16 7 H 0.10 1.24 6.99 -51.93 -0.36 0.87 16 8 N -0.73 -8.06 4.27 -54.94 -0.23 -8.30 16 9 C 0.51 6.58 6.82 -10.98 -0.07 6.50 16 10 C -0.17 -1.40 10.30 36.01 0.37 -1.03 16 11 O -0.50 -9.03 12.60 -18.76 -0.24 -9.26 16 12 C 0.51 8.65 6.04 -10.99 -0.07 8.58 16 13 O -0.52 -10.54 13.70 -18.76 -0.26 -10.80 16 14 N -0.61 -9.86 2.83 -170.52 -0.48 -10.34 16 15 C 0.12 1.80 6.35 -2.53 -0.02 1.78 16 16 C -0.11 -1.78 3.25 -88.47 -0.29 -2.07 16 17 H 0.08 1.40 8.00 -51.93 -0.42 0.98 16 18 C -0.13 -1.89 9.31 37.16 0.35 -1.54 16 19 C 0.18 3.22 3.06 -66.09 -0.20 3.01 16 20 H 0.06 1.18 8.02 -51.93 -0.42 0.76 16 21 N -0.71 -16.09 5.18 -51.65 -0.27 -16.36 16 22 C -0.25 -6.31 9.98 -15.06 -0.15 -6.46 16 23 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 24 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 25 N -0.93 -26.39 13.06 55.49 0.72 -25.66 16 26 Si 0.91 21.12 29.55 -169.99 -5.02 16.09 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 29 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 30 C 0.06 1.02 5.38 -3.06 -0.02 1.00 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.65 6.49 -51.93 -0.34 0.31 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.61 7.28 -51.93 -0.38 0.24 16 36 H 0.06 0.83 6.39 -51.93 -0.33 0.50 16 37 H 0.06 0.96 6.84 -51.93 -0.36 0.60 16 38 H 0.07 0.95 6.57 -51.93 -0.34 0.61 16 39 H 0.40 2.98 8.83 -40.82 -0.36 2.62 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 1.11 8.09 -51.93 -0.42 0.69 16 44 H 0.06 0.91 7.99 -51.93 -0.41 0.49 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 48 H 0.39 9.48 7.71 -40.82 -0.31 9.17 16 49 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 50 H 0.08 1.44 4.91 -51.93 -0.26 1.19 16 51 H 0.05 0.85 8.00 -51.93 -0.42 0.43 16 LS Contribution 392.68 15.07 5.92 5.92 Total: -1.00 -32.63 392.68 -8.66 -41.29 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -8.79 Total: 12.14 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -0.01 Total: 5.28 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -0.26 Total: -60.66 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.49 Total: -20.06 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.63 -8.66 -41.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216811489.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.006 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds