Wall clock time and date at job start Sat Apr 11 2020 01:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47415 * 2 1 4 4 H 1.09004 * 109.46939 * 54.99704 * 3 2 1 5 5 C 1.53002 * 109.47022 * 294.99922 * 3 2 1 6 6 C 1.52999 * 109.47157 * 175.00055 * 3 2 1 7 7 H 1.08999 * 109.47275 * 63.39980 * 6 3 2 8 8 N 1.46493 * 109.47063 * 303.39440 * 6 3 2 9 9 C 1.34776 * 120.00357 * 300.00597 * 8 6 3 10 10 C 1.50703 * 120.00047 * 180.02562 * 9 8 6 11 11 O 1.21277 * 120.00029 * 359.97438 * 9 8 6 12 12 C 1.50699 * 109.46839 * 183.39766 * 6 3 2 13 13 O 1.21282 * 120.00011 * 85.18358 * 12 6 3 14 14 N 1.34778 * 120.00188 * 265.17483 * 12 6 3 15 15 C 1.47426 * 125.65139 * 174.78617 * 14 12 6 16 16 C 1.54906 * 104.83361 * 204.09855 * 15 14 12 17 17 H 1.09002 * 111.00494 * 81.06473 * 16 15 14 18 18 C 1.52998 * 111.00264 * 204.91988 * 16 15 14 19 19 C 1.55167 * 101.58189 * 322.99280 * 16 15 14 20 20 H 1.08998 * 110.86970 * 277.06672 * 19 16 15 21 21 N 1.46495 * 110.71966 * 153.86471 * 19 16 15 22 22 C 1.36934 * 119.99942 * 160.02223 * 21 19 16 23 23 H 1.08000 * 119.99863 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00032 * 180.02562 * 22 21 19 25 25 N 1.31626 * 120.00077 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00180 * 180.27584 * 24 22 21 27 27 H 1.48498 * 109.47501 * 179.72545 * 26 24 22 28 28 H 1.48502 * 109.47378 * 299.72628 * 26 24 22 29 29 H 1.48501 * 109.46892 * 59.72621 * 26 24 22 30 30 C 1.47023 * 125.64363 * 354.75498 * 14 12 6 31 31 H 1.08996 * 109.47151 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46983 * 300.00262 * 1 2 3 33 33 H 1.09004 * 109.46913 * 59.99844 * 1 2 3 34 34 H 1.09005 * 109.46983 * 239.99738 * 2 1 3 35 35 H 1.09004 * 109.46913 * 120.00156 * 2 1 3 36 36 H 1.09004 * 109.46827 * 56.18591 * 5 3 2 37 37 H 1.08996 * 109.46871 * 176.18068 * 5 3 2 38 38 H 1.08995 * 109.47384 * 296.18919 * 5 3 2 39 39 H 0.97010 * 119.99993 * 119.99920 * 8 6 3 40 40 H 1.08997 * 109.47332 * 89.99604 * 10 9 8 41 41 H 1.09001 * 109.46933 * 209.99863 * 10 9 8 42 42 H 1.08999 * 109.46945 * 329.98768 * 10 9 8 43 43 H 1.08993 * 110.36544 * 322.93809 * 15 14 12 44 44 H 1.08998 * 110.36087 * 85.15121 * 15 14 12 45 45 H 1.09003 * 109.46867 * 172.19514 * 18 16 15 46 46 H 1.08996 * 109.47158 * 292.19248 * 18 16 15 47 47 H 1.08995 * 109.47413 * 52.20057 * 18 16 15 48 48 H 0.97008 * 120.00219 * 340.02732 * 21 19 16 49 49 H 0.97000 * 119.99537 * 179.97438 * 25 24 22 50 50 H 1.09001 * 109.88875 * 59.55522 * 30 14 12 51 51 H 1.08998 * 110.01111 * 298.45967 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6354 2.1265 -1.3074 6 6 3.5649 1.4442 0.1257 7 1 4.0020 0.9580 -0.7464 8 7 3.9559 0.7184 1.3367 9 6 3.5292 1.1412 2.5431 10 6 3.9319 0.3948 3.7889 11 8 2.8219 2.1228 2.6264 12 6 4.0603 2.8650 0.2097 13 8 4.0908 3.4343 1.2801 14 7 4.4697 3.5029 -0.9048 15 6 4.8731 4.9186 -0.9854 16 6 4.6463 5.3118 -2.4665 17 1 3.5979 5.5450 -2.6527 18 6 5.5458 6.4829 -2.8668 19 6 5.0660 4.0115 -3.2018 20 1 6.1475 3.9705 -3.3314 21 7 4.3864 3.9051 -4.4952 22 6 4.8923 3.0861 -5.4691 23 1 5.7920 2.5183 -5.2834 24 6 4.2487 2.9857 -6.6948 25 7 3.1524 3.6781 -6.9213 26 14 4.9344 1.8626 -8.0206 27 1 4.0662 1.9289 -9.2235 28 1 6.3083 2.2990 -8.3773 29 1 4.9740 0.4668 -7.5151 30 6 4.5887 2.9019 -2.2413 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 0.5540 2.0654 -1.4297 37 1 1.9393 3.1729 -1.2791 38 1 2.1244 1.6285 -2.1446 39 1 4.5219 -0.0666 1.2702 40 1 4.8628 0.8092 4.1758 41 1 3.1494 0.4946 4.5411 42 1 4.0745 -0.6592 3.5508 43 1 4.2499 5.5284 -0.3313 44 1 5.9240 5.0293 -0.7184 45 1 5.4694 6.6489 -3.9414 46 1 5.2297 7.3815 -2.3370 47 1 6.5791 6.2527 -2.6074 48 1 3.5781 4.4149 -4.6619 49 1 2.7029 3.6082 -7.7780 50 1 3.6192 2.5231 -2.5651 51 1 5.3159 2.0903 -2.2219 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216811489.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:34:44 Heat of formation + Delta-G solvation = -85.886792 kcal Electronic energy + Delta-G solvation = -30032.293322 eV Core-core repulsion = 26158.863013 eV Total energy + Delta-G solvation = -3873.430308 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.86333 -40.27075 -38.66276 -37.57559 -35.79606 -34.83552 -33.91739 -32.51296 -31.61981 -30.28831 -29.10264 -28.13804 -26.78966 -25.79830 -24.84201 -23.01987 -22.07124 -21.42378 -21.09343 -19.68507 -19.02787 -18.59852 -17.74027 -17.32170 -17.14326 -16.68365 -16.23053 -16.05887 -15.44906 -15.33999 -15.23953 -14.83586 -14.76414 -14.50558 -14.40012 -14.08574 -13.86466 -13.65898 -13.55677 -13.28761 -13.18958 -13.03363 -12.95453 -12.92442 -12.77054 -12.74730 -12.48300 -12.23600 -12.17770 -12.01504 -11.88814 -11.75494 -11.63850 -11.55538 -11.38920 -11.22027 -10.88914 -10.49445 -9.83789 -9.55723 -9.00791 -7.89145 -5.18759 1.53168 1.53976 1.54820 1.60790 1.77524 2.03041 2.45644 2.61284 3.37262 3.42539 3.66215 3.76973 3.82819 3.85464 3.92686 4.03709 4.18056 4.20122 4.23456 4.36859 4.46410 4.48395 4.55521 4.58352 4.62371 4.63746 4.67707 4.69476 4.72591 4.89754 4.90337 5.02066 5.05767 5.07898 5.10705 5.12920 5.14932 5.20244 5.27876 5.32373 5.37986 5.45476 5.49986 5.52900 5.60106 6.30616 6.55917 6.68465 7.18458 7.38962 7.51269 8.10360 8.34971 9.33412 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.013029 B = 0.003851 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.483917 B = 7268.968795 C = 8473.047051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.089 4.089 4 H 0.064 0.936 5 C -0.146 4.146 6 C 0.144 3.856 7 H 0.122 0.878 8 N -0.712 5.712 9 C 0.497 3.503 10 C -0.161 4.161 11 O -0.559 6.559 12 C 0.510 3.490 13 O -0.556 6.556 14 N -0.612 5.612 15 C 0.119 3.881 16 C -0.103 4.103 17 H 0.068 0.932 18 C -0.127 4.127 19 C 0.174 3.826 20 H 0.068 0.932 21 N -0.720 5.720 22 C -0.239 4.239 23 H 0.081 0.919 24 C -0.067 4.067 25 N -0.967 5.967 26 Si 0.966 3.034 27 H -0.302 1.302 28 H -0.280 1.280 29 H -0.275 1.275 30 C 0.074 3.926 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.034 0.966 38 H 0.065 0.935 39 H 0.422 0.578 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.049 0.951 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.375 0.625 49 H 0.249 0.751 50 H 0.073 0.927 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.764 -9.297 16.506 19.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 C -0.109 4.109 4 H 0.082 0.918 5 C -0.204 4.204 6 C 0.035 3.965 7 H 0.140 0.860 8 N -0.367 5.367 9 C 0.285 3.715 10 C -0.220 4.220 11 O -0.436 6.436 12 C 0.298 3.702 13 O -0.433 6.433 14 N -0.347 5.347 15 C -0.004 4.004 16 C -0.123 4.123 17 H 0.086 0.914 18 C -0.185 4.185 19 C 0.063 3.937 20 H 0.086 0.914 21 N -0.359 5.359 22 C -0.370 4.370 23 H 0.099 0.901 24 C -0.260 4.260 25 N -0.617 5.617 26 Si 0.795 3.205 27 H -0.229 1.229 28 H -0.207 1.207 29 H -0.201 1.201 30 C -0.051 4.051 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.084 0.916 39 H 0.260 0.740 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.131 0.869 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.068 0.932 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.207 0.793 49 H 0.058 0.942 50 H 0.091 0.909 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.373 -8.469 17.131 19.257 hybrid contribution 0.000 -0.215 -1.197 1.216 sum 2.373 -8.684 15.934 18.301 Atomic orbital electron populations 1.21796 0.95479 1.02236 1.01378 1.21459 0.96285 0.93747 1.02810 1.21340 0.92199 0.98850 0.98531 0.91765 1.21945 1.02270 0.99486 0.96672 1.20915 0.96665 0.89048 0.89909 0.85979 1.45732 1.54217 1.32176 1.04597 1.21560 0.79478 0.84243 0.86180 1.21858 1.04331 1.02149 0.93657 1.90746 1.38236 1.27459 1.87126 1.21150 0.76925 0.89774 0.82393 1.90749 1.55019 1.68880 1.28650 1.48612 1.65188 1.12055 1.08816 1.22203 1.00197 0.81759 0.96267 1.22510 1.00462 0.96189 0.93129 0.91352 1.21560 0.99123 0.96572 1.01250 1.21378 0.96108 0.91737 0.84451 0.91368 1.42445 1.30365 1.52682 1.10386 1.19565 1.06812 1.17679 0.92962 0.90085 1.25451 0.98229 1.02120 1.00182 1.69807 1.21116 1.46559 1.24185 0.85335 0.77178 0.79243 0.78717 1.22911 1.20661 1.20130 1.23237 1.02210 0.98447 0.81243 0.91147 0.93850 0.92783 0.90650 0.91059 0.91400 0.94712 0.91604 0.74015 0.88401 0.89255 0.86904 0.92043 0.90521 0.93213 0.91362 0.91445 0.79291 0.94181 0.90866 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.67 71.98 0.70 -2.31 16 2 C -0.11 -2.12 5.29 30.60 0.16 -1.96 16 3 C -0.09 -2.36 1.69 -10.79 -0.02 -2.38 16 4 H 0.06 2.17 6.27 -2.38 -0.01 2.15 16 5 C -0.15 -4.18 7.45 71.98 0.54 -3.65 16 6 C 0.14 3.66 2.33 44.25 0.10 3.76 16 7 H 0.12 2.62 6.99 -2.39 -0.02 2.61 16 8 N -0.71 -14.33 4.27 -446.12 -1.90 -16.23 16 9 C 0.50 12.30 6.82 87.66 0.60 12.90 16 10 C -0.16 -2.23 10.30 71.24 0.73 -1.50 16 11 O -0.56 -20.43 12.60 20.23 0.25 -20.17 16 12 C 0.51 16.93 6.04 87.66 0.53 17.46 16 13 O -0.56 -22.82 13.70 20.22 0.28 -22.55 16 14 N -0.61 -19.25 2.83 -811.80 -2.30 -21.54 16 15 C 0.12 3.59 6.35 86.85 0.55 4.14 16 16 C -0.10 -3.21 3.25 -9.40 -0.03 -3.24 16 17 H 0.07 2.34 8.00 -2.39 -0.02 2.33 16 18 C -0.13 -3.47 9.31 71.98 0.67 -2.80 16 19 C 0.17 6.11 3.06 46.19 0.14 6.25 16 20 H 0.07 2.38 8.02 -2.39 -0.02 2.36 16 21 N -0.72 -32.51 5.18 -317.32 -1.64 -34.15 16 22 C -0.24 -11.92 9.98 84.03 0.84 -11.09 16 23 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 24 C -0.07 -3.57 5.50 84.86 0.47 -3.11 16 25 N -0.97 -55.85 13.06 21.65 0.28 -55.57 16 26 Si 0.97 43.14 29.55 68.60 2.03 45.16 16 27 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 28 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 29 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 30 C 0.07 2.34 5.38 86.73 0.47 2.81 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.05 1.12 6.49 -2.38 -0.02 1.11 16 34 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.07 1.28 7.28 -2.38 -0.02 1.26 16 36 H 0.07 1.83 6.39 -2.39 -0.02 1.81 16 37 H 0.03 1.14 6.84 -2.39 -0.02 1.13 16 38 H 0.07 1.87 6.57 -2.39 -0.02 1.86 16 39 H 0.42 4.83 8.83 -92.70 -0.82 4.01 16 40 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 1.97 8.09 -2.39 -0.02 1.95 16 44 H 0.08 2.12 7.99 -2.39 -0.02 2.10 16 45 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.07 1.63 8.07 -2.39 -0.02 1.61 16 48 H 0.37 18.73 7.71 -92.70 -0.72 18.01 16 49 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 50 H 0.07 2.50 4.91 -2.39 -0.01 2.49 16 51 H 0.07 2.04 8.00 -2.39 -0.02 2.02 16 Total: -1.00 -72.60 392.68 2.84 -69.76 By element: Atomic # 1 Polarization: 40.59 SS G_CDS: -0.60 Total: 39.99 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 6.45 Total: 15.30 kcal Atomic # 7 Polarization: -121.93 SS G_CDS: -5.56 Total: -127.49 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: 0.53 Total: -42.72 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -72.60 2.84 -69.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216811489.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.129 kcal (2) G-P(sol) polarization free energy of solvation -72.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds