Wall clock time and date at job start Sat Apr 11 2020 01:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46960 * 2 1 4 4 H 1.09005 * 109.47150 * 54.99935 * 3 2 1 5 5 C 1.53004 * 109.47072 * 294.99825 * 3 2 1 6 6 C 1.52994 * 109.46865 * 175.00026 * 3 2 1 7 7 C 1.50707 * 109.47088 * 184.99983 * 6 3 2 8 8 O 1.21286 * 119.99906 * 359.97438 * 7 6 3 9 9 N 1.34772 * 119.99825 * 179.97438 * 7 6 3 10 10 C 1.46509 * 119.99730 * 179.97438 * 9 7 6 11 11 C 1.53119 * 109.52055 * 204.99995 * 10 9 7 12 12 C 1.53039 * 109.27478 * 182.44111 * 11 10 9 13 13 N 1.46852 * 109.52336 * 59.18093 * 12 11 10 14 14 C 1.46900 * 111.00118 * 174.15791 * 13 12 11 15 15 C 1.50697 * 109.47237 * 293.61170 * 14 13 12 16 16 O 1.21294 * 119.99957 * 353.73088 * 15 14 13 17 17 N 1.34777 * 120.00218 * 173.72893 * 15 14 13 18 18 C 1.37099 * 120.00043 * 179.97438 * 17 15 14 19 19 H 1.07997 * 119.99929 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99738 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00132 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99888 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47259 * 60.00225 * 22 20 18 24 24 H 1.48499 * 109.47362 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47363 * 300.00100 * 22 20 18 26 26 C 1.46845 * 111.19897 * 298.25829 * 13 12 11 27 27 C 1.53038 * 109.52423 * 61.74130 * 26 13 12 28 28 H 1.08999 * 109.47274 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47231 * 300.00195 * 1 2 3 30 30 H 1.09007 * 109.47012 * 60.00320 * 1 2 3 31 31 H 1.09006 * 109.46708 * 240.00124 * 2 1 3 32 32 H 1.08994 * 109.46867 * 120.00057 * 2 1 3 33 33 H 1.09005 * 109.47125 * 60.00551 * 5 3 2 34 34 H 1.09004 * 109.47238 * 180.02562 * 5 3 2 35 35 H 1.08997 * 109.47205 * 299.99700 * 5 3 2 36 36 H 1.08997 * 109.47556 * 65.00070 * 6 3 2 37 37 H 1.08995 * 109.47255 * 304.99577 * 6 3 2 38 38 H 0.97001 * 120.00964 * 0.02562 * 9 7 6 39 39 H 1.08999 * 109.52385 * 325.12948 * 10 9 7 40 40 H 1.08998 * 109.50519 * 62.50799 * 11 10 9 41 41 H 1.08998 * 109.53606 * 302.39924 * 11 10 9 42 42 H 1.08994 * 109.46299 * 299.16822 * 12 11 10 43 43 H 1.09003 * 109.45395 * 179.18930 * 12 11 10 44 44 H 1.08996 * 109.46919 * 173.61386 * 14 13 12 45 45 H 1.08994 * 109.47139 * 53.61230 * 14 13 12 46 46 H 0.97002 * 119.99804 * 0.02562 * 17 15 14 47 47 H 0.96995 * 120.00108 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.46555 * 181.75400 * 26 13 12 49 49 H 1.09004 * 109.46392 * 301.72721 * 26 13 12 50 50 H 1.08998 * 109.50374 * 180.88473 * 27 26 13 51 51 H 1.09001 * 109.50604 * 60.76106 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5647 1.4443 0.1257 7 6 4.0569 2.8633 0.2492 8 8 3.2660 3.7827 0.2374 9 7 5.3760 3.1107 0.3729 10 6 5.8545 4.4903 0.4924 11 6 7.3034 4.5734 0.0043 12 6 7.8173 6.0031 0.1883 13 7 7.7377 6.3744 1.6068 14 6 8.3506 7.6886 1.8422 15 6 9.8328 7.6052 1.5836 16 8 10.3480 6.5325 1.3486 17 7 10.5861 8.7224 1.6134 18 6 11.9347 8.6464 1.3786 19 1 12.3934 7.6913 1.1694 20 6 12.7113 9.7982 1.4099 21 7 12.1532 10.9603 1.6650 22 14 14.5486 9.6948 1.0894 23 1 14.7839 9.1403 -0.2680 24 1 15.1442 11.0521 1.1801 25 1 15.1788 8.8097 2.1017 26 6 6.3498 6.3477 2.0857 27 6 5.7921 4.9282 1.9584 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 0.5488 2.1252 -1.3970 34 1 1.9989 3.1541 -1.3076 35 1 2.0699 1.5875 -2.1492 36 1 4.0029 0.9836 -0.7596 37 1 3.8570 0.8801 1.0113 38 1 6.0087 2.3755 0.3820 39 1 5.2283 5.1467 -0.1118 40 1 7.3480 4.3037 -1.0509 41 1 7.9225 3.8870 0.5819 42 1 7.2066 6.6871 -0.4009 43 1 8.8534 6.0622 -0.1450 44 1 8.1785 7.9899 2.8755 45 1 7.9054 8.4226 1.1707 46 1 10.1741 9.5802 1.8017 47 1 12.6954 11.7642 1.6872 48 1 6.3200 6.6571 3.1304 49 1 5.7459 7.0301 1.4875 50 1 4.7569 4.9120 2.2992 51 1 6.3870 4.2474 2.5672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227068920.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:35:45 Heat of formation + Delta-G solvation = -117.033489 kcal Electronic energy + Delta-G solvation = -27702.914540 eV Core-core repulsion = 23828.133609 eV Total energy + Delta-G solvation = -3874.780930 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.23587 -40.43560 -39.14361 -37.30093 -36.13044 -35.67550 -33.32550 -32.86366 -31.84282 -31.41086 -29.05389 -28.13806 -26.35103 -25.02618 -24.25925 -23.60223 -21.47857 -21.10443 -20.94719 -20.52202 -19.85565 -17.97420 -17.73897 -17.39670 -16.66892 -16.49644 -16.43769 -16.29033 -15.84332 -15.53616 -15.35157 -15.17191 -15.06976 -14.77807 -14.55001 -14.17337 -13.99056 -13.81899 -13.47964 -13.39800 -13.20846 -12.94753 -12.79557 -12.76089 -12.70782 -12.42833 -12.35435 -12.19975 -12.15190 -12.11632 -11.85808 -11.69973 -11.60796 -11.51111 -11.38232 -11.36747 -10.63780 -10.25988 -10.00244 -9.96721 -9.21548 -8.44617 -5.93263 1.40769 1.42467 1.53337 1.73036 2.07689 2.23479 2.29531 2.74818 3.22272 3.39153 3.67552 3.83467 3.86780 3.88339 4.02681 4.08053 4.18532 4.28863 4.30227 4.37116 4.45873 4.47917 4.52441 4.55626 4.63054 4.65948 4.71287 4.72870 4.76433 4.85846 4.91559 4.94324 4.97293 5.04929 5.11915 5.16338 5.20147 5.25574 5.29647 5.35253 5.42333 5.50462 5.58100 5.63434 5.89209 6.08988 6.21373 6.62697 6.64849 7.14782 7.35538 7.58796 8.14389 8.72589 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.044098 B = 0.001807 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.803424 B =15491.688151 C =15746.168692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.075 4.075 4 H 0.057 0.943 5 C -0.152 4.152 6 C -0.132 4.132 7 C 0.508 3.492 8 O -0.579 6.579 9 N -0.717 5.717 10 C 0.152 3.848 11 C -0.106 4.106 12 C 0.059 3.941 13 N -0.529 5.529 14 C 0.056 3.944 15 C 0.443 3.557 16 O -0.611 6.611 17 N -0.575 5.575 18 C -0.333 4.333 19 H 0.080 0.920 20 C -0.013 4.013 21 N -0.922 5.922 22 Si 0.993 3.007 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.272 1.272 26 C 0.059 3.941 27 C -0.113 4.113 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.414 0.586 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.031 0.969 43 H 0.064 0.936 44 H 0.110 0.890 45 H 0.063 0.937 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.088 0.912 49 H 0.036 0.964 50 H 0.069 0.931 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.284 -18.844 -2.879 27.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.094 4.094 4 H 0.075 0.925 5 C -0.209 4.209 6 C -0.171 4.171 7 C 0.296 3.704 8 O -0.458 6.458 9 N -0.369 5.369 10 C 0.047 3.953 11 C -0.145 4.145 12 C -0.070 4.070 13 N -0.254 5.254 14 C -0.075 4.075 15 C 0.230 3.770 16 O -0.497 6.497 17 N -0.213 5.213 18 C -0.462 4.462 19 H 0.098 0.902 20 C -0.213 4.213 21 N -0.563 5.563 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.069 4.069 27 C -0.152 4.152 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.251 0.749 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.049 0.951 43 H 0.082 0.918 44 H 0.128 0.872 45 H 0.081 0.919 46 H 0.229 0.771 47 H 0.086 0.914 48 H 0.106 0.894 49 H 0.055 0.945 50 H 0.087 0.913 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.164 -19.067 -2.771 27.889 hybrid contribution 0.685 1.297 -0.415 1.524 sum -19.480 -17.769 -3.186 26.558 Atomic orbital electron populations 1.21827 0.95945 1.01892 1.01651 1.21559 0.96013 0.94800 1.02864 1.20887 0.93310 0.96779 0.98444 0.92475 1.21948 1.01267 1.00717 0.96941 1.21822 0.97171 0.91915 1.06222 1.21353 0.81824 0.92692 0.74501 1.90664 1.55561 1.48170 1.51444 1.46064 1.07847 1.08743 1.74203 1.20827 0.94488 0.83714 0.96288 1.21693 0.94306 0.96433 1.02021 1.22033 1.00954 0.96317 0.87661 1.61512 1.17610 1.27292 1.19029 1.21731 0.91006 0.91259 1.03487 1.20709 0.89708 0.84006 0.82575 1.90468 1.75018 1.29464 1.54747 1.41948 1.07831 1.08700 1.62829 1.19637 0.84234 0.95250 1.47088 0.90169 1.26032 1.04645 0.94059 0.96567 1.69671 1.38479 0.98896 1.49216 0.84989 0.76874 0.77607 0.78865 1.19697 1.19638 1.19711 1.22121 0.86603 0.97056 1.01127 1.21840 1.00631 0.96177 0.96575 0.91949 0.93327 0.92808 0.90969 0.90985 0.92642 0.93546 0.92380 0.86805 0.86666 0.74924 0.91447 0.89873 0.90580 0.95111 0.91767 0.87158 0.91902 0.77142 0.91384 0.89381 0.94545 0.91267 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.67 71.98 0.70 -0.90 16 2 C -0.11 -1.09 5.40 30.59 0.17 -0.93 16 3 C -0.08 -1.04 2.04 -10.80 -0.02 -1.06 16 4 H 0.06 1.03 7.96 -2.38 -0.02 1.01 16 5 C -0.15 -2.48 8.69 71.98 0.63 -1.85 16 6 C -0.13 -1.49 5.17 29.85 0.15 -1.34 16 7 C 0.51 9.70 7.52 87.66 0.66 10.36 16 8 O -0.58 -15.96 13.63 -3.05 -0.04 -16.00 16 9 N -0.72 -12.21 5.08 -442.12 -2.25 -14.46 16 10 C 0.15 3.38 2.52 45.07 0.11 3.49 16 11 C -0.11 -2.57 5.57 30.65 0.17 -2.40 16 12 C 0.06 1.86 5.12 86.33 0.44 2.30 16 13 N -0.53 -17.11 4.35 -900.94 -3.92 -21.02 16 14 C 0.06 1.98 5.45 85.56 0.47 2.45 16 15 C 0.44 21.03 7.31 87.66 0.64 21.68 16 16 O -0.61 -33.25 14.29 -3.07 -0.04 -33.29 16 17 N -0.58 -29.61 5.29 -306.98 -1.62 -31.23 16 18 C -0.33 -18.86 9.68 84.04 0.81 -18.04 16 19 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 20 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 21 N -0.92 -49.94 13.05 21.66 0.28 -49.66 16 22 Si 0.99 42.91 29.55 68.60 2.03 44.94 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 26 C 0.06 1.50 5.46 86.33 0.47 1.97 16 27 C -0.11 -2.60 5.67 30.65 0.17 -2.43 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.59 6.57 -2.38 -0.02 0.57 16 31 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.05 0.86 6.57 -2.38 -0.02 0.84 16 34 H 0.05 1.04 5.95 -2.39 -0.01 1.02 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.41 4.74 8.61 -92.71 -0.80 3.94 16 39 H 0.07 1.76 7.58 -2.39 -0.02 1.74 16 40 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.06 2.54 6.06 -2.39 -0.01 2.52 16 44 H 0.11 3.43 7.98 -2.39 -0.02 3.41 16 45 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 46 H 0.39 19.42 7.90 -92.71 -0.73 18.69 16 47 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 48 H 0.09 2.04 8.01 -2.39 -0.02 2.02 16 49 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 50 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 51 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -70.61 399.90 -0.13 -70.74 By element: Atomic # 1 Polarization: 37.54 SS G_CDS: -0.61 Total: 36.94 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 6.04 Total: 13.05 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -7.50 Total: -116.37 kcal Atomic # 8 Polarization: -49.21 SS G_CDS: -0.09 Total: -49.29 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -70.61 -0.13 -70.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227068920.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.290 kcal (2) G-P(sol) polarization free energy of solvation -70.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds