Wall clock time and date at job start Sat Apr 11 2020 01:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47155 * 2 1 4 4 H 1.09002 * 109.46999 * 305.00368 * 3 2 1 5 5 C 1.52996 * 109.47348 * 64.99929 * 3 2 1 6 6 C 1.50701 * 109.47709 * 185.00274 * 3 2 1 7 7 O 1.21285 * 119.99398 * 359.97438 * 6 3 2 8 8 N 1.34773 * 120.00387 * 180.02562 * 6 3 2 9 9 C 1.46501 * 119.99704 * 179.97438 * 8 6 3 10 10 C 1.50701 * 109.47070 * 179.97438 * 9 8 6 11 11 O 1.21290 * 119.99544 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00782 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00960 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.46613 * 34.99756 * 13 12 10 15 15 C 1.52998 * 109.46958 * 275.00168 * 13 12 10 16 16 C 1.53001 * 109.47229 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47259 * 59.99879 * 16 15 13 18 18 C 1.53012 * 109.46981 * 300.00142 * 17 16 15 19 19 C 1.52995 * 109.47436 * 155.00040 * 13 12 10 20 20 H 1.08994 * 109.47294 * 59.99974 * 19 13 12 21 21 N 1.46505 * 109.47024 * 300.00014 * 19 13 12 22 22 C 1.36931 * 119.99788 * 155.00126 * 21 19 13 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 19 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 19 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00121 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00072 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99871 * 26 24 22 30 30 H 1.09001 * 109.47042 * 299.99614 * 1 2 3 31 31 H 1.08993 * 109.47348 * 60.00072 * 1 2 3 32 32 H 1.09001 * 109.46869 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47373 * 239.99967 * 2 1 3 34 34 H 1.09003 * 109.47460 * 119.99944 * 2 1 3 35 35 H 1.08998 * 109.47051 * 300.00512 * 5 3 2 36 36 H 1.09004 * 109.47100 * 59.99895 * 5 3 2 37 37 H 1.09001 * 109.47377 * 180.02562 * 5 3 2 38 38 H 0.96997 * 120.00259 * 359.97438 * 8 6 3 39 39 H 1.08997 * 109.47177 * 60.00044 * 9 8 6 40 40 H 1.09002 * 109.47501 * 299.99289 * 9 8 6 41 41 H 0.97002 * 119.99359 * 359.97438 * 12 10 9 42 42 H 1.08993 * 109.47492 * 299.99710 * 15 13 12 43 43 H 1.09002 * 109.47259 * 59.99478 * 15 13 12 44 44 H 1.08998 * 109.47334 * 180.02562 * 16 15 13 45 45 H 1.09002 * 109.46839 * 299.99891 * 16 15 13 46 46 H 1.08994 * 109.47028 * 59.99969 * 17 16 15 47 47 H 1.08999 * 109.47724 * 180.02562 * 17 16 15 48 48 H 1.08994 * 109.47099 * 299.99784 * 18 17 16 49 49 H 1.08991 * 109.46870 * 179.97438 * 18 17 16 50 50 H 0.97000 * 119.99792 * 334.99921 * 21 19 13 51 51 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5419 1.4444 -0.1239 7 8 4.1450 0.3952 -0.2038 8 7 4.2149 2.6119 -0.1448 9 6 5.6750 2.6136 -0.2647 10 6 6.1773 4.0344 -0.2649 11 8 5.3928 4.9550 -0.1742 12 7 7.4982 4.2823 -0.3657 13 6 7.9866 5.6635 -0.3652 14 1 7.3650 6.2684 0.2950 15 6 7.9214 6.2279 -1.7858 16 6 8.4309 7.6706 -1.7853 17 6 9.8784 7.7001 -1.2907 18 6 9.9436 7.1356 0.1300 19 6 9.4342 5.6924 0.1291 20 1 10.0557 5.0875 -0.5310 21 7 9.4966 5.1519 1.4894 22 6 10.6609 4.6014 1.9546 23 1 11.5333 4.5660 1.3189 24 6 10.7217 4.0945 3.2455 25 7 9.6587 4.1382 4.0203 26 14 12.3122 3.3506 3.8828 27 1 13.1310 4.4093 4.5262 28 1 12.0003 2.2930 4.8776 29 1 13.0697 2.7579 2.7513 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.5489 2.1252 1.3969 36 1 2.0698 1.5875 2.1491 37 1 1.9982 3.1544 1.3071 38 1 3.7325 3.4510 -0.0806 39 1 5.9636 2.1265 -1.1961 40 1 6.1093 2.0745 0.5772 41 1 8.1256 3.5461 -0.4378 42 1 8.5429 5.6230 -2.4460 43 1 6.8900 6.2072 -2.1380 44 1 8.3840 8.0728 -2.7972 45 1 7.8090 8.2752 -1.1252 46 1 10.5003 7.0954 -1.9508 47 1 10.2413 8.7279 -1.2899 48 1 9.3218 7.7403 0.7900 49 1 10.9749 7.1562 0.4821 50 1 8.7132 5.1841 2.0604 51 1 9.7011 3.7836 4.9222 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230171504.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:35:56 Heat of formation + Delta-G solvation = -96.881658 kcal Electronic energy + Delta-G solvation = -28391.831451 eV Core-core repulsion = 24517.924370 eV Total energy + Delta-G solvation = -3873.907082 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.32031 -39.53791 -37.93257 -35.62503 -34.48624 -34.09749 -33.83370 -31.19439 -30.40026 -29.55125 -28.11310 -26.97162 -25.31728 -23.76431 -22.47140 -21.62346 -21.11825 -20.29922 -19.97611 -19.48133 -17.78447 -17.18552 -16.50162 -16.13553 -15.86626 -15.60983 -15.25015 -14.97206 -14.42813 -14.25450 -13.97996 -13.84407 -13.72173 -13.62775 -13.14332 -13.01828 -12.97791 -12.66657 -12.52344 -12.34309 -12.14308 -12.08546 -11.86088 -11.77877 -11.12696 -11.02918 -10.95250 -10.90213 -10.89115 -10.80046 -10.62475 -10.37508 -10.20115 -9.86370 -9.84299 -9.70263 -9.63647 -9.17785 -8.96201 -8.69977 -7.03467 -5.82074 -3.12078 2.57791 2.76446 2.89090 3.39538 3.44946 3.46912 3.58996 4.49847 4.52112 4.58189 4.71195 4.82007 5.00900 5.08580 5.10057 5.15675 5.25160 5.26135 5.31525 5.39684 5.46805 5.48130 5.49212 5.60230 5.66687 5.67549 5.75623 5.77496 5.84102 5.85285 5.89957 5.92549 6.05009 6.06872 6.14248 6.25729 6.27506 6.41048 6.41979 6.44196 6.53241 6.77512 6.83460 7.01730 7.45736 7.63971 7.74033 8.17002 8.34716 8.37703 9.46958 10.02360 10.37469 11.39750 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.010529 B = 0.003095 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.635512 B = 9043.389128 C =11107.784995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.109 4.109 4 H 0.097 0.903 5 C -0.148 4.148 6 C 0.517 3.483 7 O -0.542 6.542 8 N -0.715 5.715 9 C 0.098 3.902 10 C 0.512 3.488 11 O -0.551 6.551 12 N -0.700 5.700 13 C 0.141 3.859 14 H 0.085 0.915 15 C -0.124 4.124 16 C -0.114 4.114 17 C -0.120 4.120 18 C -0.133 4.133 19 C 0.173 3.827 20 H 0.051 0.949 21 N -0.722 5.722 22 C -0.242 4.242 23 H 0.070 0.930 24 C -0.010 4.010 25 N -0.929 5.929 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.411 0.589 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.406 0.594 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.057 0.943 49 H 0.066 0.934 50 H 0.384 0.616 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.674 -0.556 -12.223 18.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.130 4.130 4 H 0.115 0.885 5 C -0.206 4.206 6 C 0.303 3.697 7 O -0.419 6.419 8 N -0.370 5.370 9 C -0.030 4.030 10 C 0.297 3.703 11 O -0.430 6.430 12 N -0.349 5.349 13 C 0.036 3.964 14 H 0.103 0.897 15 C -0.163 4.163 16 C -0.152 4.152 17 C -0.158 4.158 18 C -0.174 4.174 19 C 0.062 3.938 20 H 0.069 0.931 21 N -0.362 5.362 22 C -0.373 4.373 23 H 0.088 0.912 24 C -0.207 4.207 25 N -0.577 5.577 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.249 0.751 39 H 0.113 0.887 40 H 0.120 0.880 41 H 0.241 0.759 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.084 0.916 50 H 0.218 0.782 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.602 -0.745 -12.157 18.258 hybrid contribution 0.891 -0.247 0.714 1.169 sum -12.711 -0.993 -11.443 17.132 Atomic orbital electron populations 1.21845 0.95519 1.01849 1.01879 1.21346 0.95282 0.94149 1.03575 1.21332 0.91435 0.99464 1.00751 0.88498 1.21856 1.02294 1.00604 0.95809 1.20703 0.90109 0.83192 0.75666 1.90707 1.70331 1.31406 1.49483 1.45729 1.06545 1.09842 1.74902 1.21081 0.82158 0.94996 1.04733 1.20362 0.83167 0.90631 0.76151 1.90654 1.55397 1.46005 1.50910 1.45814 1.06612 1.09804 1.72655 1.21344 0.97022 0.81677 0.96355 0.89691 1.21869 1.01115 0.96449 0.96839 1.21469 0.96881 0.96152 1.00662 1.21586 0.96005 1.00397 0.97812 1.22231 1.02186 0.98162 0.94822 1.20481 0.91421 0.93241 0.88667 0.93069 1.42411 1.13128 1.70707 1.09986 1.19189 0.90313 1.31278 0.96541 0.91184 1.24741 0.97259 1.01851 0.96800 1.69665 1.27921 1.51496 1.08571 0.86230 0.83000 0.78610 0.78543 1.21772 1.21812 1.20766 0.92375 0.92747 0.92503 0.91148 0.91203 0.91156 0.91863 0.91845 0.75113 0.88670 0.87988 0.75852 0.91964 0.91970 0.92362 0.91971 0.92352 0.92653 0.92454 0.91553 0.78172 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.67 37.16 0.36 -0.71 16 2 C -0.11 -0.98 4.75 -26.73 -0.13 -1.11 16 3 C -0.11 -1.02 2.72 -91.77 -0.25 -1.27 16 4 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 5 C -0.15 -1.24 8.84 37.16 0.33 -0.92 16 6 C 0.52 6.68 7.15 -10.99 -0.08 6.60 16 7 O -0.54 -8.89 15.92 5.55 0.09 -8.81 16 8 N -0.72 -9.00 5.42 -61.47 -0.33 -9.34 16 9 C 0.10 1.30 6.15 -5.19 -0.03 1.27 16 10 C 0.51 7.78 7.86 -10.99 -0.09 7.69 16 11 O -0.55 -9.60 15.33 5.55 0.09 -9.51 16 12 N -0.70 -10.60 4.91 -53.81 -0.26 -10.86 16 13 C 0.14 2.25 1.98 -67.94 -0.13 2.12 16 14 H 0.09 1.56 7.58 -51.93 -0.39 1.17 16 15 C -0.12 -1.65 5.49 -26.73 -0.15 -1.79 16 16 C -0.11 -1.40 5.92 -26.73 -0.16 -1.56 16 17 C -0.12 -1.57 5.92 -26.73 -0.16 -1.73 16 18 C -0.13 -2.22 5.51 -26.70 -0.15 -2.37 16 19 C 0.17 3.11 2.30 -67.90 -0.16 2.96 16 20 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 21 N -0.72 -16.74 4.95 -53.40 -0.26 -17.00 16 22 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 23 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 25 N -0.93 -27.28 13.06 55.49 0.72 -26.55 16 26 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 30 H 0.06 0.37 6.57 -51.93 -0.34 0.03 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.72 7.96 -51.93 -0.41 0.30 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.47 6.56 -51.93 -0.34 0.13 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.53 7.56 -51.93 -0.39 0.14 16 38 H 0.41 4.88 6.85 -40.82 -0.28 4.60 16 39 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.41 5.86 8.60 -40.82 -0.35 5.51 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 49 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 50 H 0.38 9.87 7.80 -40.82 -0.32 9.55 16 51 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 405.99 15.07 6.12 6.12 Total: -1.00 -31.35 405.99 -9.04 -40.39 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: -9.14 Total: 16.40 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -1.03 Total: 2.37 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: -0.14 Total: -63.75 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.17 Total: -18.32 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.35 -9.04 -40.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230171504.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.488 kcal (2) G-P(sol) polarization free energy of solvation -31.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds