Wall clock time and date at job start Sat Apr 11 2020 01:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47155 * 2 1 4 4 H 1.09002 * 109.46999 * 305.00368 * 3 2 1 5 5 C 1.52996 * 109.47348 * 64.99929 * 3 2 1 6 6 C 1.50701 * 109.47709 * 185.00274 * 3 2 1 7 7 O 1.21285 * 119.99398 * 359.97438 * 6 3 2 8 8 N 1.34773 * 120.00387 * 180.02562 * 6 3 2 9 9 C 1.46501 * 119.99704 * 179.97438 * 8 6 3 10 10 C 1.50701 * 109.47070 * 179.97438 * 9 8 6 11 11 O 1.21290 * 119.99544 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00782 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00960 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.46613 * 34.99756 * 13 12 10 15 15 C 1.52998 * 109.46958 * 275.00168 * 13 12 10 16 16 C 1.53001 * 109.47229 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47259 * 59.99879 * 16 15 13 18 18 C 1.53012 * 109.46981 * 300.00142 * 17 16 15 19 19 C 1.52995 * 109.47436 * 155.00040 * 13 12 10 20 20 H 1.08994 * 109.47294 * 59.99974 * 19 13 12 21 21 N 1.46505 * 109.47024 * 300.00014 * 19 13 12 22 22 C 1.36931 * 119.99788 * 155.00126 * 21 19 13 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 19 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 19 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00121 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00072 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99871 * 26 24 22 30 30 H 1.09001 * 109.47042 * 299.99614 * 1 2 3 31 31 H 1.08993 * 109.47348 * 60.00072 * 1 2 3 32 32 H 1.09001 * 109.46869 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47373 * 239.99967 * 2 1 3 34 34 H 1.09003 * 109.47460 * 119.99944 * 2 1 3 35 35 H 1.08998 * 109.47051 * 300.00512 * 5 3 2 36 36 H 1.09004 * 109.47100 * 59.99895 * 5 3 2 37 37 H 1.09001 * 109.47377 * 180.02562 * 5 3 2 38 38 H 0.96997 * 120.00259 * 359.97438 * 8 6 3 39 39 H 1.08997 * 109.47177 * 60.00044 * 9 8 6 40 40 H 1.09002 * 109.47501 * 299.99289 * 9 8 6 41 41 H 0.97002 * 119.99359 * 359.97438 * 12 10 9 42 42 H 1.08993 * 109.47492 * 299.99710 * 15 13 12 43 43 H 1.09002 * 109.47259 * 59.99478 * 15 13 12 44 44 H 1.08998 * 109.47334 * 180.02562 * 16 15 13 45 45 H 1.09002 * 109.46839 * 299.99891 * 16 15 13 46 46 H 1.08994 * 109.47028 * 59.99969 * 17 16 15 47 47 H 1.08999 * 109.47724 * 180.02562 * 17 16 15 48 48 H 1.08994 * 109.47099 * 299.99784 * 18 17 16 49 49 H 1.08991 * 109.46870 * 179.97438 * 18 17 16 50 50 H 0.97000 * 119.99792 * 334.99921 * 21 19 13 51 51 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5419 1.4444 -0.1239 7 8 4.1450 0.3952 -0.2038 8 7 4.2149 2.6119 -0.1448 9 6 5.6750 2.6136 -0.2647 10 6 6.1773 4.0344 -0.2649 11 8 5.3928 4.9550 -0.1742 12 7 7.4982 4.2823 -0.3657 13 6 7.9866 5.6635 -0.3652 14 1 7.3650 6.2684 0.2950 15 6 7.9214 6.2279 -1.7858 16 6 8.4309 7.6706 -1.7853 17 6 9.8784 7.7001 -1.2907 18 6 9.9436 7.1356 0.1300 19 6 9.4342 5.6924 0.1291 20 1 10.0557 5.0875 -0.5310 21 7 9.4966 5.1519 1.4894 22 6 10.6609 4.6014 1.9546 23 1 11.5333 4.5660 1.3189 24 6 10.7217 4.0945 3.2455 25 7 9.6587 4.1382 4.0203 26 14 12.3122 3.3506 3.8828 27 1 13.1310 4.4093 4.5262 28 1 12.0003 2.2930 4.8776 29 1 13.0697 2.7579 2.7513 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.5489 2.1252 1.3969 36 1 2.0698 1.5875 2.1491 37 1 1.9982 3.1544 1.3071 38 1 3.7325 3.4510 -0.0806 39 1 5.9636 2.1265 -1.1961 40 1 6.1093 2.0745 0.5772 41 1 8.1256 3.5461 -0.4378 42 1 8.5429 5.6230 -2.4460 43 1 6.8900 6.2072 -2.1380 44 1 8.3840 8.0728 -2.7972 45 1 7.8090 8.2752 -1.1252 46 1 10.5003 7.0954 -1.9508 47 1 10.2413 8.7279 -1.2899 48 1 9.3218 7.7403 0.7900 49 1 10.9749 7.1562 0.4821 50 1 8.7132 5.1841 2.0604 51 1 9.7011 3.7836 4.9222 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230171504.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:35:55 Heat of formation + Delta-G solvation = -118.343567 kcal Electronic energy + Delta-G solvation = -28392.762109 eV Core-core repulsion = 24517.924370 eV Total energy + Delta-G solvation = -3874.837740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.48255 -40.70837 -39.23441 -36.42953 -35.83220 -35.60102 -35.15293 -33.00075 -31.32843 -30.58311 -29.57386 -28.16379 -26.07797 -25.61513 -23.62015 -22.64621 -22.42653 -21.54368 -21.03454 -20.64498 -19.23800 -18.69151 -17.74158 -17.34048 -16.97267 -16.83225 -16.53078 -16.20286 -15.72296 -15.49782 -15.30956 -15.11286 -14.88439 -14.62460 -14.43393 -14.27903 -14.07156 -13.96866 -13.59011 -13.52125 -13.34583 -12.97062 -12.93171 -12.81200 -12.56827 -12.52804 -12.25109 -12.16976 -12.03929 -12.01399 -11.72294 -11.65598 -11.58529 -11.43525 -11.18784 -11.04325 -10.89471 -10.77217 -10.28308 -9.98186 -8.99713 -7.92303 -5.20545 1.47504 1.48043 1.48342 1.56460 1.58495 1.79762 2.45721 2.56276 3.41210 3.55891 3.67564 3.71922 3.83389 3.87434 3.97872 4.14469 4.24765 4.26640 4.31381 4.34257 4.42242 4.44626 4.50658 4.52610 4.60011 4.62511 4.70487 4.72927 4.94636 4.96049 5.01869 5.02985 5.12026 5.14358 5.19094 5.24999 5.25458 5.30256 5.31735 5.37696 5.46721 5.51139 5.52931 5.55574 5.66902 6.27858 6.43547 6.49157 7.11571 7.14967 7.35057 8.09132 8.32480 9.30552 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.010529 B = 0.003095 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.635512 B = 9043.389128 C =11107.784995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.102 4.102 4 H 0.122 0.878 5 C -0.145 4.145 6 C 0.513 3.487 7 O -0.582 6.582 8 N -0.711 5.711 9 C 0.103 3.897 10 C 0.514 3.486 11 O -0.573 6.573 12 N -0.699 5.699 13 C 0.149 3.851 14 H 0.057 0.943 15 C -0.114 4.114 16 C -0.110 4.110 17 C -0.111 4.111 18 C -0.128 4.128 19 C 0.171 3.829 20 H 0.059 0.941 21 N -0.731 5.731 22 C -0.229 4.229 23 H 0.079 0.921 24 C -0.074 4.074 25 N -0.968 5.968 26 Si 0.966 3.034 27 H -0.292 1.292 28 H -0.302 1.302 29 H -0.267 1.267 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.048 0.952 37 H 0.063 0.937 38 H 0.416 0.584 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.410 0.590 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.087 0.913 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.041 0.959 49 H 0.048 0.952 50 H 0.369 0.631 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.997 0.068 -14.473 20.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.123 4.123 4 H 0.140 0.860 5 C -0.203 4.203 6 C 0.301 3.699 7 O -0.462 6.462 8 N -0.366 5.366 9 C -0.024 4.024 10 C 0.300 3.700 11 O -0.453 6.453 12 N -0.348 5.348 13 C 0.044 3.956 14 H 0.076 0.924 15 C -0.153 4.153 16 C -0.148 4.148 17 C -0.149 4.149 18 C -0.169 4.169 19 C 0.062 3.938 20 H 0.077 0.923 21 N -0.370 5.370 22 C -0.361 4.361 23 H 0.097 0.903 24 C -0.267 4.267 25 N -0.619 5.619 26 Si 0.796 3.204 27 H -0.220 1.220 28 H -0.229 1.229 29 H -0.192 1.192 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.255 0.745 39 H 0.130 0.870 40 H 0.108 0.892 41 H 0.246 0.754 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.060 0.940 49 H 0.067 0.933 50 H 0.200 0.800 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.905 -0.088 -14.468 20.067 hybrid contribution 0.996 -0.393 1.362 1.732 sum -12.909 -0.482 -13.107 18.403 Atomic orbital electron populations 1.21813 0.93316 1.02512 1.02895 1.21329 0.97111 0.93719 1.02119 1.21401 0.88638 1.00049 1.02249 0.86017 1.21862 1.03760 1.00123 0.94545 1.21411 0.91592 0.82422 0.74453 1.90687 1.71428 1.32679 1.51365 1.45760 1.06176 1.10157 1.74512 1.21008 0.82771 0.93575 1.05072 1.20592 0.82908 0.91065 0.75455 1.90639 1.55889 1.46847 1.51952 1.45817 1.06806 1.09711 1.72462 1.21196 0.94802 0.81872 0.97728 0.92445 1.21808 1.01565 0.97299 0.94665 1.21474 0.95930 0.95291 1.02136 1.21522 0.96974 1.01329 0.95031 1.22099 1.00468 0.96948 0.97380 1.20704 0.93116 0.93853 0.86139 0.92339 1.42574 1.11744 1.70940 1.11756 1.19561 0.91160 1.29067 0.96289 0.90318 1.25465 0.99967 1.03686 0.97533 1.69825 1.29916 1.53667 1.08536 0.85250 0.79817 0.77397 0.77952 1.21977 1.22899 1.19156 0.91461 0.91542 0.92123 0.92445 0.92941 0.88758 0.93328 0.91806 0.74539 0.86963 0.89202 0.75388 0.90335 0.92040 0.89488 0.92705 0.91030 0.90971 0.94013 0.93306 0.79989 0.94394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.67 71.98 0.70 -1.07 16 2 C -0.10 -1.88 4.75 30.59 0.15 -1.73 16 3 C -0.10 -1.81 2.72 -11.54 -0.03 -1.84 16 4 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 5 C -0.15 -2.26 8.84 71.98 0.64 -1.63 16 6 C 0.51 13.20 7.15 87.66 0.63 13.82 16 7 O -0.58 -19.45 15.92 -3.05 -0.05 -19.50 16 8 N -0.71 -17.75 5.42 -466.78 -2.53 -20.28 16 9 C 0.10 2.76 6.15 85.63 0.53 3.29 16 10 C 0.51 15.59 7.86 87.66 0.69 16.28 16 11 O -0.57 -19.92 15.33 -3.06 -0.05 -19.97 16 12 N -0.70 -20.99 4.91 -442.55 -2.17 -23.16 16 13 C 0.15 4.69 1.98 44.99 0.09 4.78 16 14 H 0.06 2.15 7.58 -2.39 -0.02 2.13 16 15 C -0.11 -2.78 5.49 30.59 0.17 -2.62 16 16 C -0.11 -2.40 5.92 30.59 0.18 -2.21 16 17 C -0.11 -2.58 5.92 30.60 0.18 -2.40 16 18 C -0.13 -4.18 5.51 30.61 0.17 -4.01 16 19 C 0.17 6.06 2.30 45.01 0.10 6.16 16 20 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 21 N -0.73 -34.34 4.95 -322.86 -1.60 -35.94 16 22 C -0.23 -11.94 9.93 84.04 0.83 -11.10 16 23 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 24 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 25 N -0.97 -58.49 13.06 21.65 0.28 -58.21 16 26 Si 0.97 45.33 29.55 68.60 2.03 47.36 16 27 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 28 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 29 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 30 H 0.07 0.69 6.57 -2.39 -0.02 0.67 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 1.17 7.96 -2.39 -0.02 1.15 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.02 6.56 -2.39 -0.02 1.01 16 36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.06 0.99 7.56 -2.39 -0.02 0.97 16 38 H 0.42 9.65 6.85 -92.71 -0.64 9.02 16 39 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.41 11.68 8.60 -92.71 -0.80 10.89 16 42 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.37 19.55 7.80 -92.71 -0.72 18.82 16 51 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 Total: -1.00 -69.00 405.99 0.17 -68.83 By element: Atomic # 1 Polarization: 50.05 SS G_CDS: -1.23 Total: 48.82 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 5.48 Total: 12.05 kcal Atomic # 7 Polarization: -131.57 SS G_CDS: -6.02 Total: -137.59 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -0.10 Total: -39.47 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -69.00 0.17 -68.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230171504.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.513 kcal (2) G-P(sol) polarization free energy of solvation -69.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds