Wall clock time and date at job start Sat Apr 11 2020 01:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30655 * 1 3 3 Si 1.86805 * 120.00145 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72646 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72556 * 3 2 1 6 6 H 1.48494 * 109.47142 * 149.72481 * 3 2 1 7 7 C 1.40145 * 119.99972 * 179.72675 * 2 1 3 8 8 H 1.08000 * 119.99562 * 179.97438 * 7 2 1 9 9 C 1.41081 * 119.99978 * 0.02562 * 7 2 1 10 10 N 1.33649 * 119.13514 * 359.72776 * 9 7 2 11 11 C 1.31587 * 120.83001 * 179.71396 * 10 9 7 12 12 C 1.40425 * 119.09339 * 0.55103 * 11 10 9 13 13 C 1.47946 * 120.78978 * 179.70331 * 12 11 10 14 14 C 1.39616 * 120.09041 * 179.74921 * 13 12 11 15 15 C 1.38440 * 119.90138 * 179.77309 * 14 13 12 16 16 O 1.35900 * 119.95374 * 180.25034 * 15 14 13 17 17 C 1.38834 * 120.09449 * 0.52260 * 15 14 13 18 18 C 1.38782 * 120.18520 * 359.70350 * 17 15 14 19 19 O 1.35905 * 119.95100 * 180.02562 * 18 17 15 20 20 C 1.42904 * 116.99928 * 0.02562 * 19 18 17 21 21 F 1.39904 * 109.46688 * 60.00012 * 20 19 18 22 22 F 1.39899 * 109.47150 * 179.97438 * 20 19 18 23 23 F 1.39901 * 109.46980 * 299.99988 * 20 19 18 24 24 C 1.38475 * 120.09894 * 0.04277 * 18 17 15 25 25 C 1.40423 * 118.42033 * 359.72780 * 12 11 10 26 26 N 1.31595 * 119.09379 * 359.97438 * 25 12 11 27 27 H 0.97000 * 120.00273 * 0.27127 * 1 2 3 28 28 H 1.07997 * 120.45049 * 180.25020 * 11 10 9 29 29 H 1.07997 * 120.05298 * 0.02562 * 14 13 12 30 30 H 0.96702 * 113.99927 * 270.27252 * 16 15 14 31 31 H 1.07999 * 119.90709 * 179.72925 * 17 15 14 32 32 H 1.07998 * 120.05028 * 179.97438 * 24 18 17 33 33 H 1.07995 * 120.45444 * 180.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4939 2.0430 -1.4001 5 1 1.4351 2.6543 0.6942 6 1 3.5352 1.4419 0.7058 7 6 2.0073 -1.2137 0.0058 8 1 3.0873 -1.2136 0.0054 9 6 1.3019 -2.4355 0.0111 10 7 -0.0345 -2.4153 0.0160 11 6 -0.7259 -3.5349 0.0154 12 6 -0.0406 -4.7605 0.0212 13 6 -0.7803 -6.0418 0.0273 14 6 -0.0842 -7.2520 0.0278 15 6 -0.7803 -8.4486 0.0382 16 8 -0.1037 -9.6272 0.0439 17 6 -2.1686 -8.4463 0.0373 18 6 -2.8645 -7.2455 0.0321 19 8 -4.2235 -7.2489 0.0317 20 6 -4.8691 -8.5237 0.0374 21 9 -4.4918 -9.2324 1.1831 22 9 -6.2565 -8.3439 0.0367 23 9 -4.4911 -9.2430 -1.1015 24 6 -2.1761 -6.0440 0.0269 25 6 1.3635 -4.7412 0.0217 26 7 1.9875 -3.5826 0.0161 27 1 -0.4850 0.8400 -0.0040 28 1 -1.8056 -3.5114 0.0153 29 1 0.9958 -7.2547 0.0241 30 1 0.0927 -9.9721 -0.8379 31 1 -2.7087 -9.3816 0.0410 32 1 -2.7184 -5.1101 0.0224 33 1 1.9237 -5.6645 0.0257 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242987944.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:35:40 Heat of formation + Delta-G solvation = -185.806075 kcal Electronic energy + Delta-G solvation = -26377.389849 eV Core-core repulsion = 21759.860949 eV Total energy + Delta-G solvation = -4617.528900 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.066 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.49555 -49.20916 -49.08180 -41.54990 -40.74580 -39.52145 -37.42936 -35.77911 -33.90545 -33.30295 -30.90704 -30.61112 -28.03464 -27.04417 -25.05807 -24.57723 -23.23182 -22.72613 -20.63899 -20.21409 -20.18178 -19.86170 -18.90560 -18.15009 -17.70492 -17.11234 -16.83338 -16.31944 -16.30945 -16.07666 -15.87067 -15.66157 -15.51608 -15.48202 -15.35232 -15.18710 -15.02824 -14.98957 -14.56003 -14.47244 -14.16503 -13.27558 -13.14376 -13.02807 -12.83411 -12.78133 -12.53052 -12.00274 -11.82187 -11.42313 -11.23628 -11.10171 -10.60980 -9.58858 -9.35066 -9.18296 -8.54571 -6.79822 -0.26360 0.16267 0.41030 0.89115 1.04890 1.40192 1.51429 1.56867 1.73981 2.16263 2.45088 2.70501 2.78138 2.94873 3.12343 3.70175 3.80100 3.84111 3.86600 3.94163 4.13061 4.19992 4.27144 4.34615 4.61242 4.91516 4.93834 4.99613 5.17465 5.27176 5.28517 5.65639 5.68992 5.81123 6.04586 6.40678 6.48832 6.81416 7.08062 8.10742 8.24087 Molecular weight = 326.07amu Principal moments of inertia in cm(-1) A = 0.021810 B = 0.002801 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.533594 B = 9994.973917 C =11101.468266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.729 5.729 2 C 0.020 3.980 3 Si 1.003 2.997 4 H -0.258 1.258 5 H -0.261 1.261 6 H -0.254 1.254 7 C -0.407 4.407 8 H 0.097 0.903 9 C 0.350 3.650 10 N -0.540 5.540 11 C 0.171 3.829 12 C -0.325 4.325 13 C 0.074 3.926 14 C -0.185 4.185 15 C 0.166 3.834 16 O -0.499 6.499 17 C -0.250 4.250 18 C 0.129 3.871 19 O -0.317 6.317 20 C 0.608 3.392 21 F -0.164 7.164 22 F -0.129 7.129 23 F -0.162 7.162 24 C -0.164 4.164 25 C 0.185 3.815 26 N -0.618 5.618 27 H 0.290 0.710 28 H 0.155 0.845 29 H 0.144 0.856 30 H 0.416 0.584 31 H 0.146 0.854 32 H 0.139 0.861 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.313 -13.788 -1.740 15.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.349 5.349 2 C -0.206 4.206 3 Si 0.821 3.179 4 H -0.182 1.182 5 H -0.185 1.185 6 H -0.178 1.178 7 C -0.440 4.440 8 H 0.115 0.885 9 C 0.118 3.882 10 N -0.257 5.257 11 C -0.005 4.005 12 C -0.335 4.335 13 C 0.072 3.928 14 C -0.203 4.203 15 C 0.121 3.879 16 O -0.313 6.313 17 C -0.269 4.269 18 C 0.087 3.913 19 O -0.237 6.237 20 C 0.518 3.482 21 F -0.146 7.146 22 F -0.110 7.110 23 F -0.144 7.144 24 C -0.183 4.183 25 C 0.011 3.989 26 N -0.337 5.337 27 H 0.101 0.899 28 H 0.172 0.828 29 H 0.162 0.838 30 H 0.276 0.724 31 H 0.164 0.836 32 H 0.156 0.844 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.108 -12.446 -1.139 14.378 hybrid contribution -0.519 -0.627 -0.461 0.936 sum -7.627 -13.073 -1.600 15.220 Atomic orbital electron populations 1.70157 1.09090 1.30469 1.25178 1.27191 0.95961 1.04916 0.92540 0.84894 0.78837 0.74260 0.79906 1.18224 1.18530 1.17796 1.19908 0.95486 0.88965 1.39625 0.88499 1.20368 0.86646 0.91878 0.89312 1.69338 1.08169 1.28353 1.19817 1.23547 1.00263 0.87994 0.88683 1.19793 0.95225 0.93389 1.25064 1.18094 0.90946 0.91616 0.92163 1.21567 1.01427 0.90549 1.06802 1.17794 0.88525 0.85453 0.96123 1.84746 1.75929 1.34855 1.35806 1.21677 0.95681 0.96843 1.12723 1.18232 0.78204 0.94825 1.00054 1.86409 1.20437 1.27623 1.89202 1.19238 0.76880 0.77303 0.74788 1.93308 1.91130 1.78979 1.51213 1.93312 1.26359 1.95040 1.96308 1.93298 1.91096 1.78415 1.51590 1.20417 0.93021 0.96191 1.08683 1.23298 0.91158 0.96243 0.88175 1.68697 1.41289 0.99104 1.24603 0.89869 0.82832 0.83822 0.72390 0.83639 0.84355 0.81385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -36.60 11.40 21.85 0.25 -36.35 16 2 C 0.02 0.94 5.50 85.33 0.47 1.40 16 3 Si 1.00 35.30 29.56 68.60 2.03 37.33 16 4 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 5 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 6 H -0.25 -8.75 7.11 99.48 0.71 -8.04 16 7 C -0.41 -21.59 9.35 23.43 0.22 -21.37 16 8 H 0.10 4.92 7.85 -2.91 -0.02 4.90 16 9 C 0.35 19.32 7.35 134.91 0.99 20.31 16 10 N -0.54 -29.04 7.83 -193.18 -1.51 -30.55 16 11 C 0.17 7.81 10.70 85.26 0.91 8.72 16 12 C -0.33 -13.35 5.94 -19.64 -0.12 -13.46 16 13 C 0.07 2.48 5.88 -20.05 -0.12 2.36 16 14 C -0.18 -5.28 9.39 22.65 0.21 -5.07 16 15 C 0.17 4.21 6.69 22.46 0.15 4.36 16 16 O -0.50 -10.19 13.50 -92.42 -1.25 -11.44 16 17 C -0.25 -6.38 8.19 22.54 0.18 -6.19 16 18 C 0.13 3.62 6.47 22.46 0.15 3.77 16 19 O -0.32 -8.23 10.37 -92.48 -0.96 -9.18 16 20 C 0.61 13.08 3.42 113.37 0.39 13.47 16 21 F -0.16 -3.54 15.56 44.97 0.70 -2.84 16 22 F -0.13 -2.58 17.53 44.97 0.79 -1.79 16 23 F -0.16 -3.29 15.55 44.97 0.70 -2.60 16 24 C -0.16 -5.12 9.39 22.65 0.21 -4.91 16 25 C 0.19 7.92 10.70 85.26 0.91 8.83 16 26 N -0.62 -31.58 10.34 -193.18 -2.00 -33.57 16 27 H 0.29 12.88 8.29 -92.71 -0.77 12.11 16 28 H 0.15 6.10 6.33 -2.91 -0.02 6.08 16 29 H 0.14 3.74 6.28 -2.91 -0.02 3.72 16 30 H 0.42 4.09 9.06 -74.06 -0.67 3.42 16 31 H 0.15 3.27 5.07 -2.91 -0.01 3.25 16 32 H 0.14 4.21 6.28 -2.91 -0.02 4.19 16 33 H 0.17 5.75 6.33 -2.91 -0.02 5.74 16 Total: -1.00 -63.22 307.42 3.88 -59.33 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.57 Total: 19.44 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 4.56 Total: 12.22 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -3.26 Total: -100.48 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -2.21 Total: -20.62 kcal Atomic # 9 Polarization: -9.41 SS G_CDS: 2.19 Total: -7.23 kcal Atomic # 14 Polarization: 35.30 SS G_CDS: 2.03 Total: 37.33 kcal Total: -63.22 3.88 -59.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242987944.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.474 kcal (2) G-P(sol) polarization free energy of solvation -63.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds