Wall clock time and date at job start Sat Apr 11 2020 01:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47287 * 2 1 4 4 C 1.46504 * 120.00011 * 270.00342 * 3 2 1 5 5 C 1.50703 * 109.46689 * 269.99990 * 4 3 2 6 6 H 1.07998 * 120.00211 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99454 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99582 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00205 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47217 * 90.00447 * 9 7 5 11 11 H 1.48498 * 109.46978 * 210.00337 * 9 7 5 12 12 H 1.48494 * 109.47203 * 330.00243 * 9 7 5 13 13 C 1.34774 * 120.00069 * 90.00091 * 3 2 1 14 14 S 1.71200 * 120.00332 * 180.02562 * 13 3 2 15 15 N 1.34786 * 119.99596 * 0.02562 * 13 3 2 16 16 C 1.34774 * 119.99596 * 179.97438 * 15 13 3 17 17 O 1.21537 * 120.00047 * 359.97438 * 16 15 13 18 18 C 1.47709 * 119.99994 * 180.02562 * 16 15 13 19 19 C 1.39656 * 120.13196 * 0.27234 * 18 16 15 20 20 C 1.37881 * 119.86227 * 180.21059 * 19 18 16 21 21 C 1.38523 * 120.13243 * 359.51502 * 20 19 18 22 22 Cl 1.73607 * 119.86065 * 180.27821 * 21 20 19 23 23 C 1.38516 * 120.27692 * 0.25922 * 21 20 19 24 24 C 1.37888 * 120.13361 * 359.97438 * 23 21 20 25 25 H 1.08994 * 109.47170 * 299.99965 * 1 2 3 26 26 H 1.09002 * 109.46892 * 60.00164 * 1 2 3 27 27 H 1.08997 * 109.46949 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46773 * 239.99865 * 2 1 3 29 29 H 1.08997 * 109.46802 * 120.00569 * 2 1 3 30 30 H 1.08991 * 109.47128 * 29.99717 * 4 3 2 31 31 H 1.08999 * 109.46990 * 149.99763 * 4 3 2 32 32 H 0.97003 * 120.00056 * 179.97438 * 8 7 5 33 33 H 0.96996 * 120.00141 * 359.97438 * 15 13 3 34 34 H 1.07998 * 120.06773 * 0.02562 * 19 18 16 35 35 H 1.08002 * 119.93580 * 179.79895 * 20 19 18 36 36 H 1.07997 * 119.93881 * 180.02562 * 23 21 20 37 37 H 1.07993 * 120.07026 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3904 -2.8775 8 7 5.3913 2.1833 -3.2574 9 14 3.0131 3.4360 -3.9287 10 1 3.1158 4.8562 -3.5069 11 1 3.4067 3.3137 -5.3553 12 1 1.6136 2.9694 -3.7596 13 6 2.2431 2.0165 1.1672 14 16 2.8132 3.6308 1.1672 15 7 2.0189 1.3809 2.3344 16 6 2.2441 2.0161 3.5016 17 8 2.6497 3.1617 3.5016 18 6 1.9990 1.3194 4.7808 19 6 1.5393 0.0006 4.7840 20 6 1.3082 -0.6429 5.9813 21 6 1.5406 0.0126 7.1793 22 17 1.2542 -0.8069 8.6828 23 6 2.0010 1.3190 7.1827 24 6 2.2313 1.9749 5.9919 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.5818 1.6878 -2.0283 31 1 2.0956 3.1410 -1.1384 32 1 5.7174 2.5738 -4.0834 33 1 1.6956 0.4664 2.3344 34 1 1.3624 -0.5130 3.8506 35 1 0.9497 -1.6617 5.9852 36 1 2.1807 1.8247 8.1199 37 1 2.5906 2.9933 5.9957 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248168052.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:36:07 Heat of formation + Delta-G solvation = 8.780335 kcal Electronic energy + Delta-G solvation = -22431.028835 eV Core-core repulsion = 18939.947691 eV Total energy + Delta-G solvation = -3491.081144 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 326.060 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.22074 -40.27087 -39.30270 -37.47555 -36.28644 -34.73553 -32.69802 -32.27443 -32.13868 -30.01512 -26.68650 -25.25116 -24.54437 -23.83374 -22.41555 -22.09952 -19.91258 -19.15703 -18.88755 -18.05798 -17.13947 -16.93017 -16.73269 -16.28247 -16.02199 -15.92331 -15.27049 -15.01965 -14.80792 -14.61943 -14.49649 -14.35959 -13.82226 -13.40955 -13.31275 -13.01107 -12.86031 -12.64185 -12.56765 -12.49631 -12.20860 -12.04547 -11.99782 -11.88898 -11.78119 -11.71624 -10.80659 -10.47519 -10.20865 -9.89983 -8.90952 -8.31369 -7.69872 -6.35611 -0.59701 0.10283 0.17682 0.83215 1.00398 1.32980 1.41912 1.44048 1.47623 1.63876 2.11186 2.33616 2.60675 3.05611 3.31267 3.62267 3.74670 3.77208 4.07897 4.08733 4.17599 4.19141 4.45366 4.49858 4.68858 4.73376 4.83598 4.84827 4.92343 4.94691 5.04391 5.10985 5.26234 5.33716 5.42530 5.54472 5.68911 6.06921 6.20517 6.62829 6.79959 7.25580 8.85489 Molecular weight = 326.06amu Principal moments of inertia in cm(-1) A = 0.025296 B = 0.002861 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.619919 B = 9784.585397 C =10318.357538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.069 3.931 3 N -0.518 5.518 4 C 0.215 3.785 5 C -0.519 4.519 6 H 0.031 0.969 7 C 0.020 3.980 8 N -0.943 5.943 9 Si 0.939 3.061 10 H -0.283 1.283 11 H -0.278 1.278 12 H -0.230 1.230 13 C 0.552 3.448 14 S -0.670 6.670 15 N -0.626 5.626 16 C 0.530 3.470 17 O -0.452 6.452 18 C -0.139 4.139 19 C -0.066 4.066 20 C -0.108 4.108 21 C -0.014 4.014 22 Cl -0.056 7.056 23 C -0.114 4.114 24 C -0.054 4.054 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.113 0.887 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.268 0.732 33 H 0.426 0.574 34 H 0.164 0.836 35 H 0.171 0.829 36 H 0.159 0.841 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.006 -14.226 20.055 29.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.055 4.055 3 N -0.222 5.222 4 C 0.092 3.908 5 C -0.558 4.558 6 H 0.049 0.951 7 C -0.179 4.179 8 N -0.583 5.583 9 Si 0.762 3.238 10 H -0.209 1.209 11 H -0.203 1.203 12 H -0.153 1.153 13 C 0.194 3.806 14 S -0.537 6.537 15 N -0.276 5.276 16 C 0.315 3.685 17 O -0.320 6.320 18 C -0.143 4.143 19 C -0.085 4.085 20 C -0.127 4.127 21 C -0.041 4.041 22 Cl -0.027 7.027 23 C -0.133 4.133 24 C -0.073 4.073 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.132 0.868 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.270 0.730 34 H 0.181 0.819 35 H 0.189 0.811 36 H 0.176 0.824 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.311 -12.559 19.964 28.120 hybrid contribution 0.097 -0.355 -0.643 0.741 sum -15.214 -12.914 19.322 27.777 Atomic orbital electron populations 1.22224 0.91968 1.05189 1.02839 1.22430 0.97131 0.79829 1.06085 1.47843 1.55506 1.14493 1.04314 1.19971 0.96298 0.95286 0.79203 1.21127 0.96095 1.32206 1.06374 0.95107 1.25648 0.96470 0.96792 0.98950 1.70021 1.17353 1.46483 1.24460 0.85847 0.80918 0.79230 0.77762 1.20913 1.20291 1.15309 1.21747 0.83063 0.93462 0.82338 1.93462 1.63262 1.02530 1.94401 1.42961 1.62190 1.18292 1.04163 1.19066 0.78805 0.86842 0.83810 1.91324 1.37471 1.17166 1.86064 1.19868 1.06857 0.96280 0.91331 1.21521 0.95216 0.91794 0.99988 1.21305 1.00043 1.01988 0.89339 1.21419 1.00641 0.93695 0.88319 1.98406 1.94305 1.78454 1.31529 1.21202 0.99642 0.93230 0.99186 1.21284 0.95075 1.00537 0.90387 0.92118 0.92505 0.86847 0.87726 0.87913 0.91316 0.93232 0.92327 0.72969 0.81896 0.81110 0.82370 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 10.24 71.98 0.74 -1.67 16 2 C 0.07 1.49 5.89 86.38 0.51 2.00 16 3 N -0.52 -18.52 2.46 -714.15 -1.75 -20.27 16 4 C 0.21 9.62 3.99 85.63 0.34 9.96 16 5 C -0.52 -28.96 9.94 25.60 0.25 -28.70 16 6 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 7 C 0.02 1.15 5.47 84.66 0.46 1.61 16 8 N -0.94 -58.96 13.96 21.45 0.30 -58.66 16 9 Si 0.94 43.68 27.47 68.60 1.88 45.56 16 10 H -0.28 -13.81 7.11 99.48 0.71 -13.11 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.23 -9.24 6.54 99.48 0.65 -8.59 16 13 C 0.55 21.48 7.65 179.05 1.37 22.85 16 14 S -0.67 -35.47 25.01 -56.49 -1.41 -36.89 16 15 N -0.63 -17.20 5.05 -315.91 -1.60 -18.79 16 16 C 0.53 15.94 7.70 86.75 0.67 16.61 16 17 O -0.45 -18.74 13.09 -3.83 -0.05 -18.80 16 18 C -0.14 -2.80 5.87 -20.09 -0.12 -2.92 16 19 C -0.07 -0.78 9.54 22.53 0.21 -0.57 16 20 C -0.11 -1.06 9.81 22.25 0.22 -0.84 16 21 C -0.01 -0.17 6.33 22.40 0.14 -0.03 16 22 Cl -0.06 -0.65 28.95 -2.72 -0.08 -0.73 16 23 C -0.11 -1.62 9.81 22.25 0.22 -1.40 16 24 C -0.05 -1.03 9.59 22.53 0.22 -0.81 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.10 2.41 8.07 -2.38 -0.02 2.39 16 29 H 0.10 1.48 6.36 -2.39 -0.02 1.46 16 30 H 0.07 2.72 7.13 -2.39 -0.02 2.70 16 31 H 0.05 2.49 6.01 -2.39 -0.01 2.48 16 32 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 33 H 0.43 6.94 4.46 -92.71 -0.41 6.53 16 34 H 0.16 0.79 6.40 -2.91 -0.02 0.77 16 35 H 0.17 0.70 8.06 -2.91 -0.02 0.67 16 36 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.14 2.94 7.65 -2.91 -0.02 2.92 16 Total: -1.00 -88.07 341.56 3.17 -84.90 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.65 Total: 7.59 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: 5.23 Total: 16.09 kcal Atomic # 7 Polarization: -94.68 SS G_CDS: -3.05 Total: -97.73 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.05 Total: -18.80 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.56 kcal Atomic # 16 Polarization: -35.47 SS G_CDS: -1.41 Total: -36.89 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -88.07 3.17 -84.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248168052.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.681 kcal (2) G-P(sol) polarization free energy of solvation -88.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds