Wall clock time and date at job start Sat Apr 11 2020 01:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47026 * 2 1 4 4 C 1.53001 * 109.47048 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47151 * 180.02562 * 4 3 2 6 6 C 1.35916 * 117.00466 * 179.97438 * 5 4 3 7 7 C 1.38832 * 120.05998 * 269.72196 * 6 5 4 8 8 Br 1.89094 * 120.03522 * 0.25291 * 7 6 5 9 9 C 1.38189 * 119.92661 * 180.27041 * 7 6 5 10 10 C 1.38291 * 120.04821 * 0.02562 * 9 7 6 11 11 C 1.50705 * 119.94094 * 179.97438 * 10 9 7 12 12 C 1.38234 * 120.11894 * 359.95592 * 10 9 7 13 13 C 1.38189 * 120.07044 * 0.04409 * 12 10 9 14 14 C 1.50700 * 120.02356 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47233 * 265.01713 * 14 13 12 16 16 H 1.07997 * 119.99783 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99937 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99854 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00121 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.46834 * 89.99657 * 19 17 15 21 21 H 1.48494 * 109.47086 * 209.99374 * 19 17 15 22 22 H 1.48498 * 109.47459 * 329.99893 * 19 17 15 23 23 H 1.08998 * 109.47295 * 60.00417 * 1 2 3 24 24 H 1.09009 * 109.47060 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47162 * 299.99842 * 1 2 3 26 26 H 1.09009 * 109.47250 * 239.99950 * 2 1 3 27 27 H 1.09004 * 109.47269 * 120.00062 * 2 1 3 28 28 H 1.08995 * 109.47021 * 60.00072 * 3 2 1 29 29 H 1.09004 * 109.47147 * 300.00137 * 3 2 1 30 30 H 1.08995 * 109.47434 * 59.99978 * 4 3 2 31 31 H 1.08998 * 109.47001 * 299.99417 * 4 3 2 32 32 H 1.08000 * 119.97977 * 180.02562 * 9 7 6 33 33 H 1.09000 * 109.47010 * 269.97973 * 11 10 9 34 34 H 1.08996 * 109.47070 * 29.97794 * 11 10 9 35 35 H 1.09001 * 109.46693 * 149.98453 * 11 10 9 36 36 H 1.08002 * 119.96781 * 180.02562 * 12 10 9 37 37 H 1.08995 * 109.46939 * 25.02333 * 14 13 12 38 38 H 1.09003 * 109.46831 * 145.02266 * 14 13 12 39 39 H 0.97001 * 119.99765 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3937 2.9680 0.0000 7 6 6.0824 3.0644 1.2017 8 35 5.1477 2.9408 2.8408 9 6 7.4516 3.2511 1.1985 10 6 8.1352 3.3425 -0.0001 11 6 9.6284 3.5467 -0.0007 12 6 7.4515 3.2463 -1.1977 13 6 6.0823 3.0596 -1.2003 14 6 5.3380 2.9555 -2.5065 15 6 4.7925 4.3089 -2.8831 16 1 4.9678 5.1594 -2.2410 17 6 4.0707 4.4615 -4.0478 18 7 3.5952 5.6428 -4.3767 19 14 3.7682 2.9905 -5.1587 20 1 2.5062 2.3185 -4.7575 21 1 3.6593 3.4481 -6.5672 22 1 4.8986 2.0356 -5.0345 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9329 0.9288 -0.8908 31 1 3.9336 0.9286 0.8892 32 1 7.9882 3.3258 2.1328 33 1 9.8491 4.6141 -0.0031 34 1 10.0581 3.0889 0.8902 35 1 10.0578 3.0849 -0.8898 36 1 7.9880 3.3176 -2.1324 37 1 6.0171 2.6079 -3.2849 38 1 4.5149 2.2488 -2.4002 39 1 3.0870 5.7500 -5.1960 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:36:22 Heat of formation + Delta-G solvation = -38.661696 kcal Electronic energy + Delta-G solvation = -19991.597828 eV Core-core repulsion = 16944.819230 eV Total energy + Delta-G solvation = -3046.778598 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 326.062 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.75504 -37.37886 -34.92042 -33.69308 -32.27062 -31.80128 -29.58554 -29.00988 -27.74205 -25.94298 -23.43860 -23.03501 -21.24175 -20.97068 -19.91471 -17.32689 -16.79737 -16.38098 -15.26103 -15.00371 -14.62250 -14.19628 -13.85438 -13.66052 -13.52919 -13.16882 -13.00804 -12.37299 -12.34076 -12.26836 -11.99452 -11.77432 -11.67253 -11.39006 -11.17511 -11.00619 -10.81284 -10.68544 -10.55265 -10.35999 -10.17046 -9.95559 -9.91092 -9.39821 -9.27319 -8.56596 -8.17630 -7.89981 -6.05310 -4.03346 1.41138 1.67141 1.93756 3.27137 3.34854 3.35587 3.73181 4.19342 4.41166 5.02432 5.03897 5.09358 5.16766 5.21749 5.27972 5.40114 5.45471 5.62101 5.65142 5.71435 5.72794 5.75698 5.87111 5.90766 5.94336 5.98981 6.08116 6.18418 6.28183 6.38975 6.47668 6.49003 6.63582 6.81476 6.92001 7.14233 7.32867 7.66897 8.02287 8.50370 9.00115 9.54044 11.07918 Molecular weight = 326.06amu Principal moments of inertia in cm(-1) A = 0.009343 B = 0.006557 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.064219 B = 4269.272397 C = 6523.797299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.119 4.119 4 C 0.068 3.932 5 O -0.308 6.308 6 C 0.119 3.881 7 C -0.106 4.106 8 Br -0.059 7.059 9 C -0.106 4.106 10 C -0.092 4.092 11 C -0.108 4.108 12 C -0.097 4.097 13 C -0.039 4.039 14 C 0.022 3.978 15 C -0.502 4.502 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.898 5.898 19 Si 0.873 3.127 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.266 1.266 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.126 0.874 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.129 0.871 37 H 0.028 0.972 38 H 0.027 0.973 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.269 -10.449 12.991 17.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.156 4.156 4 C -0.006 4.006 5 O -0.225 6.225 6 C 0.073 3.927 7 C -0.186 4.186 8 Br 0.026 6.974 9 C -0.126 4.126 10 C -0.093 4.093 11 C -0.164 4.164 12 C -0.116 4.116 13 C -0.041 4.041 14 C -0.015 4.015 15 C -0.540 4.540 16 H 0.092 0.908 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.700 3.300 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.191 1.191 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.144 0.856 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.147 0.853 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.659 -10.265 13.469 17.326 hybrid contribution 0.042 -0.641 -1.004 1.192 sum 3.701 -10.906 12.466 16.972 Atomic orbital electron populations 1.21743 0.95533 1.01347 1.02154 1.21424 0.96117 0.96273 1.01970 1.21529 0.93187 0.96950 1.03946 1.22671 0.95084 0.82838 1.00028 1.86129 1.16585 1.25863 1.93906 1.18188 0.83733 1.00459 0.90285 1.22167 0.94946 1.10827 0.90617 1.96576 1.77110 1.97386 1.26324 1.20629 0.91426 1.02372 0.98154 1.19830 0.96147 1.00704 0.92571 1.20727 0.91083 1.02195 1.02428 1.21017 0.93558 0.99360 0.97616 1.20626 0.93303 0.94181 0.95958 1.18733 0.94949 0.99088 0.88715 1.20788 1.33327 0.92959 1.06903 0.90824 1.24930 0.95144 0.95537 0.97381 1.69893 1.36551 1.22474 1.24790 0.86887 0.79231 0.83614 0.80274 1.20088 1.21219 1.19076 0.92444 0.92890 0.92672 0.91883 0.92070 0.91039 0.90388 0.93104 0.93490 0.85572 0.91152 0.91863 0.91470 0.85261 0.95383 0.95514 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.16 0.37 -1.24 16 2 C -0.12 -1.43 5.93 -26.73 -0.16 -1.59 16 3 C -0.12 -1.77 5.58 -26.73 -0.15 -1.92 16 4 C 0.07 1.14 5.73 37.16 0.21 1.36 16 5 O -0.31 -6.35 8.67 -19.48 -0.17 -6.52 16 6 C 0.12 2.41 5.69 -39.20 -0.22 2.19 16 7 C -0.11 -1.87 6.24 -39.38 -0.25 -2.11 16 8 Br -0.06 -0.91 33.16 -68.01 -2.26 -3.16 16 9 C -0.11 -1.65 9.44 -39.58 -0.37 -2.02 16 10 C -0.09 -1.41 5.88 -104.60 -0.62 -2.02 16 11 C -0.11 -1.22 10.01 36.01 0.36 -0.86 16 12 C -0.10 -1.75 9.33 -39.60 -0.37 -2.12 16 13 C -0.04 -0.83 5.08 -104.47 -0.53 -1.36 16 14 C 0.02 0.53 3.89 -29.03 -0.11 0.42 16 15 C -0.50 -14.28 9.65 -34.44 -0.33 -14.62 16 16 H 0.07 2.33 7.98 -52.49 -0.42 1.91 16 17 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 18 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 19 Si 0.87 21.28 27.47 -169.99 -4.67 16.61 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.49 8.14 -51.92 -0.42 0.06 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.05 0.86 7.16 -51.93 -0.37 0.49 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 35 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 36 H 0.13 2.17 8.06 -52.49 -0.42 1.74 16 37 H 0.03 0.65 7.11 -51.93 -0.37 0.28 16 38 H 0.03 0.63 5.84 -51.93 -0.30 0.33 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 343.80 15.07 5.18 5.18 Total: -1.00 -30.88 343.80 -9.53 -40.41 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.12 Total: -1.74 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -2.27 Total: -23.93 kcal Atomic # 7 Polarization: -27.62 SS G_CDS: 0.77 Total: -26.84 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.17 Total: -6.52 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Atomic # 35 Polarization: -0.91 SS G_CDS: -2.26 Total: -3.16 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.88 -9.53 -40.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.745 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds