Wall clock time and date at job start Sat Apr 11 2020 01:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47026 * 2 1 4 4 C 1.53001 * 109.47048 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47151 * 180.02562 * 4 3 2 6 6 C 1.35916 * 117.00466 * 179.97438 * 5 4 3 7 7 C 1.38832 * 120.05998 * 269.72196 * 6 5 4 8 8 Br 1.89094 * 120.03522 * 0.25291 * 7 6 5 9 9 C 1.38189 * 119.92661 * 180.27041 * 7 6 5 10 10 C 1.38291 * 120.04821 * 0.02562 * 9 7 6 11 11 C 1.50705 * 119.94094 * 179.97438 * 10 9 7 12 12 C 1.38234 * 120.11894 * 359.95592 * 10 9 7 13 13 C 1.38189 * 120.07044 * 0.04409 * 12 10 9 14 14 C 1.50700 * 120.02356 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47233 * 265.01713 * 14 13 12 16 16 H 1.07997 * 119.99783 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99937 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99854 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00121 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.46834 * 89.99657 * 19 17 15 21 21 H 1.48494 * 109.47086 * 209.99374 * 19 17 15 22 22 H 1.48498 * 109.47459 * 329.99893 * 19 17 15 23 23 H 1.08998 * 109.47295 * 60.00417 * 1 2 3 24 24 H 1.09009 * 109.47060 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47162 * 299.99842 * 1 2 3 26 26 H 1.09009 * 109.47250 * 239.99950 * 2 1 3 27 27 H 1.09004 * 109.47269 * 120.00062 * 2 1 3 28 28 H 1.08995 * 109.47021 * 60.00072 * 3 2 1 29 29 H 1.09004 * 109.47147 * 300.00137 * 3 2 1 30 30 H 1.08995 * 109.47434 * 59.99978 * 4 3 2 31 31 H 1.08998 * 109.47001 * 299.99417 * 4 3 2 32 32 H 1.08000 * 119.97977 * 180.02562 * 9 7 6 33 33 H 1.09000 * 109.47010 * 269.97973 * 11 10 9 34 34 H 1.08996 * 109.47070 * 29.97794 * 11 10 9 35 35 H 1.09001 * 109.46693 * 149.98453 * 11 10 9 36 36 H 1.08002 * 119.96781 * 180.02562 * 12 10 9 37 37 H 1.08995 * 109.46939 * 25.02333 * 14 13 12 38 38 H 1.09003 * 109.46831 * 145.02266 * 14 13 12 39 39 H 0.97001 * 119.99765 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3937 2.9680 0.0000 7 6 6.0824 3.0644 1.2017 8 35 5.1477 2.9408 2.8408 9 6 7.4516 3.2511 1.1985 10 6 8.1352 3.3425 -0.0001 11 6 9.6284 3.5467 -0.0007 12 6 7.4515 3.2463 -1.1977 13 6 6.0823 3.0596 -1.2003 14 6 5.3380 2.9555 -2.5065 15 6 4.7925 4.3089 -2.8831 16 1 4.9678 5.1594 -2.2410 17 6 4.0707 4.4615 -4.0478 18 7 3.5952 5.6428 -4.3767 19 14 3.7682 2.9905 -5.1587 20 1 2.5062 2.3185 -4.7575 21 1 3.6593 3.4481 -6.5672 22 1 4.8986 2.0356 -5.0345 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9329 0.9288 -0.8908 31 1 3.9336 0.9286 0.8892 32 1 7.9882 3.3258 2.1328 33 1 9.8491 4.6141 -0.0031 34 1 10.0581 3.0889 0.8902 35 1 10.0578 3.0849 -0.8898 36 1 7.9880 3.3176 -2.1324 37 1 6.0171 2.6079 -3.2849 38 1 4.5149 2.2488 -2.4002 39 1 3.0870 5.7500 -5.1960 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 01:36:21 Heat of formation + Delta-G solvation = -54.673505 kcal Electronic energy + Delta-G solvation = -19992.292152 eV Core-core repulsion = 16944.819230 eV Total energy + Delta-G solvation = -3047.472922 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 326.062 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.15926 -38.72631 -36.02674 -35.57073 -33.73334 -33.42817 -30.95703 -30.14041 -29.44205 -27.12606 -25.12689 -24.35400 -22.67273 -22.07204 -21.41221 -18.99736 -18.71811 -17.75429 -16.54584 -16.41160 -16.24121 -15.76465 -15.16417 -14.81656 -14.77153 -14.60961 -14.22124 -14.08232 -13.80646 -13.47237 -13.31089 -13.12513 -12.83528 -12.73561 -12.60846 -12.38524 -12.16238 -11.99994 -11.90201 -11.84210 -11.65712 -11.53820 -11.35717 -11.21578 -10.80237 -10.69852 -9.57737 -9.28939 -8.29169 -6.32829 0.05558 0.28918 0.61827 1.32889 1.34383 1.45399 2.33417 2.40094 2.81260 3.04913 3.79460 3.90994 3.95785 4.01622 4.15138 4.27541 4.30376 4.34978 4.40689 4.45514 4.64536 4.68224 4.83372 4.87197 4.89531 4.90938 4.97579 5.01216 5.06068 5.14686 5.20422 5.24459 5.31783 5.42113 5.50930 5.54882 5.69620 5.81297 6.24469 6.60371 6.71229 7.28536 8.87974 Molecular weight = 326.06amu Principal moments of inertia in cm(-1) A = 0.009343 B = 0.006557 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.064219 B = 4269.272397 C = 6523.797299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.115 4.115 4 C 0.066 3.934 5 O -0.337 6.337 6 C 0.098 3.902 7 C -0.118 4.118 8 Br -0.039 7.039 9 C -0.096 4.096 10 C -0.083 4.083 11 C -0.106 4.106 12 C -0.106 4.106 13 C -0.078 4.078 14 C 0.032 3.968 15 C -0.505 4.505 16 H 0.021 0.979 17 C 0.010 3.990 18 N -0.949 5.949 19 Si 0.944 3.056 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.243 1.243 23 H 0.046 0.954 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.160 0.840 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.137 0.863 37 H 0.036 0.964 38 H 0.025 0.975 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.709 -12.687 14.112 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.153 4.153 4 C -0.008 4.008 5 O -0.255 6.255 6 C 0.053 3.947 7 C -0.198 4.198 8 Br 0.046 6.954 9 C -0.115 4.115 10 C -0.084 4.084 11 C -0.162 4.162 12 C -0.124 4.124 13 C -0.080 4.080 14 C -0.005 4.005 15 C -0.543 4.543 16 H 0.040 0.960 17 C -0.187 4.187 18 N -0.590 5.590 19 Si 0.767 3.233 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.166 1.166 23 H 0.065 0.935 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.177 0.823 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.154 0.846 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.115 -12.515 14.608 19.905 hybrid contribution -0.363 0.143 -1.205 1.267 sum 4.752 -12.373 13.403 18.849 Atomic orbital electron populations 1.21746 0.94521 1.02535 1.01893 1.21418 0.96945 0.94010 1.02870 1.21554 0.92115 0.98983 1.02638 1.22851 0.95966 0.81565 1.00424 1.86085 1.17284 1.27957 1.94125 1.18381 0.83682 1.01533 0.91139 1.22345 0.95939 1.10751 0.90767 1.96571 1.77165 1.97331 1.24305 1.21089 0.90694 1.00127 0.99637 1.20261 0.98342 0.98465 0.91349 1.20827 0.87838 1.03147 1.04384 1.21213 0.92597 0.99281 0.99321 1.20535 0.94691 0.97689 0.95043 1.18493 0.95131 0.96036 0.90810 1.20969 1.33431 0.93835 1.06114 0.96011 1.25901 0.94757 0.98838 0.99187 1.70060 1.37938 1.25212 1.25758 0.85758 0.80042 0.79795 0.77754 1.19279 1.20598 1.16581 0.93484 0.90946 0.92230 0.91785 0.90324 0.90919 0.93084 0.93768 0.91813 0.82279 0.90266 0.89251 0.90303 0.84550 0.94616 0.95708 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.91 71.98 0.71 -2.27 16 2 C -0.11 -2.59 5.93 30.59 0.18 -2.41 16 3 C -0.12 -3.47 5.58 30.59 0.17 -3.29 16 4 C 0.07 2.22 5.73 71.98 0.41 2.63 16 5 O -0.34 -14.30 8.67 -92.61 -0.80 -15.10 16 6 C 0.10 4.03 5.69 22.52 0.13 4.15 16 7 C -0.12 -4.04 6.24 22.40 0.14 -3.90 16 8 Br -0.04 -1.14 33.16 -20.37 -0.68 -1.82 16 9 C -0.10 -2.74 9.44 22.27 0.21 -2.53 16 10 C -0.08 -2.37 5.88 -19.85 -0.12 -2.48 16 11 C -0.11 -2.00 10.01 71.24 0.71 -1.29 16 12 C -0.11 -3.76 9.33 22.26 0.21 -3.55 16 13 C -0.08 -3.35 5.08 -19.77 -0.10 -3.45 16 14 C 0.03 1.58 3.89 29.10 0.11 1.69 16 15 C -0.51 -30.11 9.65 25.60 0.25 -29.87 16 16 H 0.02 1.47 7.98 -2.91 -0.02 1.44 16 17 C 0.01 0.59 5.47 84.65 0.46 1.05 16 18 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 19 Si 0.94 44.46 27.47 68.60 1.88 46.35 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.24 -10.41 6.54 99.48 0.65 -9.76 16 23 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.04 1.52 7.16 -2.39 -0.02 1.50 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.09 1.27 8.08 -2.39 -0.02 1.25 16 35 H 0.08 1.35 8.08 -2.39 -0.02 1.33 16 36 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 37 H 0.04 1.65 7.11 -2.39 -0.02 1.63 16 38 H 0.02 1.20 5.84 -2.39 -0.01 1.18 16 39 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -70.48 343.80 5.15 -65.33 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.96 Total: 11.19 kcal Atomic # 6 Polarization: -49.01 SS G_CDS: 3.48 Total: -45.52 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: 0.30 Total: -60.43 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.80 Total: -15.10 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.88 Total: 46.35 kcal Atomic # 35 Polarization: -1.14 SS G_CDS: -0.68 Total: -1.82 kcal Total: -70.48 5.15 -65.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.661 kcal (2) G-P(sol) polarization free energy of solvation -70.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds